CmoCh18G012780 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G012780
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description60S ribosomal protein L36
LocationCmo_Chr18 : 12394479 .. 12395432 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCGAAGCAGCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGGCACATTGTTACAAAGAAAGAGTTGGCCCCGCGCCCCTCTGATCGTAAAGGAGTGAGTTAATTATGCACCAACTCAATCTAGGGTGTACATTGCGTTATCTTATATTCTCTTCAAACTATTCCGTTTTTATAATTTTATGTAGTTGATTCTGTGCGTCTATGATCTTTTTGGGGATTTTAGTGATGTCTACAACCAGGGATTGCCTTCGACAAAATGAAACTTGGGAGTGTTGATTTAATGAGATATTTGTAATCTTATGTATAATGAATTCATGTTATTTACTTAGCTCAAATGCAAGGGGATAGGTCTTGATCATACATTTGATTGCTTGTGAATTGGAAGCATGAAGTGAACCTTCTAGTTTTGGTCCGTTATTAGTTTCCTGAAATGATTTTCCGACTGTTACCCTTCAAAAGTTCTTATTGACGGTAATGCTTAATGTTTGTTTGTGCCCAATTAGATCGTTAATGTTTATAAATAGTACAAGAATTCTCATTGTGAGGCTTTTGAGCCATATGCATATAATTACTCTGTTTTCATATCATACAAATTTAAGCTTGTTTGTTTTGGAATGTTTTTGCTGCCATGTTATTTTAGCTGTTGATAGCTAGAAGTAATTGACATTAATGATTAATTTTGACATGAATTTGATTGATACCATAGAAAAGCAGCAAGAGAGTTCTCTTTGTGAGGAGTTTGATCCGGGAAGTTGCTGGTTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCTAAGAAGAAGAGAGAGGAGATGTCCAGCGTTCTCCGCAAGATGAGGTACTTATACAAGTCTTTCAATTTCTCTAACTATGATTGA

mRNA sequence

ATGGCTCCGAAGCAGCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGGCACATTGTTACAAAGAAAGAGTTGGCCCCGCGCCCCTCTGATCGTAAAGGAAAAAGCAGCAAGAGAGTTCTCTTTGTGAGGAGTTTGATCCGGGAAGTTGCTGGTTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCTAAGAAGAAGAGAGAGGAGATGTCCAGCGTTCTCCGCAAGATGAGGTACTTATACAAGTCTTTCAATTTCTCTAACTATGATTGA

Coding sequence (CDS)

ATGGCTCCGAAGCAGCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGGCACATTGTTACAAAGAAAGAGTTGGCCCCGCGCCCCTCTGATCGTAAAGGAAAAAGCAGCAAGAGAGTTCTCTTTGTGAGGAGTTTGATCCGGGAAGTTGCTGGTTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCTAAGAAGAAGAGAGAGGAGATGTCCAGCGTTCTCCGCAAGATGAGGTACTTATACAAGTCTTTCAATTTCTCTAACTATGATTGA
Homology
[Close]
BLAST of CmoCh18G012780 vs. Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-39
Identity = 83/96 (86.46%), Postives = 91/96 (94.79%), Query Frame = 1 

Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRYL 104
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR L
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSL 103

[Close]
BLAST of CmoCh18G012780 vs. Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.4e-39
Identity = 83/101 (82.18%), Postives = 92/101 (91.09%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101

[Close]
BLAST of CmoCh18G012780 vs. Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.5e-38
Identity = 80/94 (85.11%), Postives = 90/94 (95.74%), Query Frame = 1 

Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97

[Close]
BLAST of CmoCh18G012780 vs. Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 1 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKR  FVR+LIREVAGF PYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92
          TELLKVGKDKRALKV + K+G H +  K+ E
Sbjct: 61 TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90

[Close]
BLAST of CmoCh18G012780 vs. Swiss-Prot
Match: RL36_ULVCO (60S ribosomal protein L36 OS=Ulva compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-27
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 12  VGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKR 71
           VGLNKGH VTKK   PRPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 72  ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           ALK+ KRKLGTH R KKKREEM+ VLRKM+
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQ 95

[Close]
BLAST of CmoCh18G012780 vs. TrEMBL
Match: A0A0A0L6L0_CUCSA (60S ribosomal protein L36 OS=Cucumis sativus GN=Csa_3G182240 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.6e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 101

[Close]
BLAST of CmoCh18G012780 vs. TrEMBL
Match: E5GCU5_CUCME (60S ribosomal protein L36 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.6e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 101

[Close]
BLAST of CmoCh18G012780 vs. TrEMBL
Match: A9PCN6_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0004s05590g PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-45
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 101

[Close]
BLAST of CmoCh18G012780 vs. TrEMBL
Match: A9P9I5_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0015s12960g PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.7e-45
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 101

[Close]
BLAST of CmoCh18G012780 vs. TrEMBL
Match: A9PD00_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0012s13060g PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.8e-45
Identity = 97/101 (96.04%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMR 101

[Close]
BLAST of CmoCh18G012780 vs. TAIR10
Match: AT2G37600.1 (AT2G37600.1 Ribosomal protein L36e family protein)

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-40
Identity = 83/96 (86.46%), Postives = 91/96 (94.79%), Query Frame = 1 

Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRYL 104
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR L
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSL 103

[Close]
BLAST of CmoCh18G012780 vs. TAIR10
Match: AT3G53740.2 (AT3G53740.2 Ribosomal protein L36e family protein)

HSP 1 Score: 162.2 bits (409), Expect = 1.9e-40
Identity = 83/101 (82.18%), Postives = 92/101 (91.09%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101

[Close]
BLAST of CmoCh18G012780 vs. TAIR10
Match: AT5G02450.1 (AT5G02450.1 Ribosomal protein L36e family protein)

HSP 1 Score: 157.9 bits (398), Expect = 3.6e-39
Identity = 80/94 (85.11%), Postives = 90/94 (95.74%), Query Frame = 1 

Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97

[Close]
BLAST of CmoCh18G012780 vs. NCBI nr
Match: gi|743928530|ref|XP_011008473.1| (PREDICTED: 60S ribosomal protein L36-1-like isoform X1 [Populus euphratica])

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-46
Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRYLYKSFNF 110
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRY+   F F
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRYIGDLFFF 109

[Close]
BLAST of CmoCh18G012780 vs. NCBI nr
Match: gi|449446023|ref|XP_004140771.1| (PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 3.8e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 101

[Close]
BLAST of CmoCh18G012780 vs. NCBI nr
Match: gi|743928532|ref|XP_011008474.1| (PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica])

HSP 1 Score: 190.3 bits (482), Expect = 1.9e-45
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 101

[Close]
BLAST of CmoCh18G012780 vs. NCBI nr
Match: gi|224079093|ref|XP_002305746.1| (60S ribosomal protein L36-3 [Populus trichocarpa])

HSP 1 Score: 190.3 bits (482), Expect = 1.9e-45
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 101

[Close]
BLAST of CmoCh18G012780 vs. NCBI nr
Match: gi|224137042|ref|XP_002322479.1| (hypothetical protein POPTR_0015s12960g [Populus trichocarpa])

HSP 1 Score: 189.9 bits (481), Expect = 2.4e-45
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 102
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 101

The following BLAST results are available for this feature:
BLAST of CmoCh18G012780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL361_ARATH2.0e-3986.4660S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1[more]
RL362_ARATH3.4e-3982.1860S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1[more]
RL363_ARATH6.5e-3885.1160S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1[more]
RL36_DAUCA1.6e-3382.4260S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2[more]
RL36_ULVCO1.0e-2773.3360S ribosomal protein L36 OS=Ulva compressa GN=RL36 PE=3 SV=1[more]
BLAST of CmoCh18G012780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6L0_CUCSA2.6e-46100.0060S ribosomal protein L36 OS=Cucumis sativus GN=Csa_3G182240 PE=3 SV=1[more]
E5GCU5_CUCME2.6e-46100.0060S ribosomal protein L36 OS=Cucumis melo subsp. melo PE=3 SV=1[more]
A9PCN6_POPTR1.3e-4598.0260S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0004s05590g PE=2 SV=1[more]
A9P9I5_POPTR1.7e-4597.0360S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0015s12960g PE=2 SV=1[more]
A9PD00_POPTR3.8e-4596.0460S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0012s13060g PE=2 SV=1[more]
BLAST of CmoCh18G012780 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37600.11.1e-4086.46 Ribosomal protein L36e family protein[more]
AT3G53740.21.9e-4082.18 Ribosomal protein L36e family protein[more]
AT5G02450.13.6e-3985.11 Ribosomal protein L36e family protein[more]
BLAST of CmoCh18G012780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|743928530|ref|XP_011008473.1|1.3e-4693.58PREDICTED: 60S ribosomal protein L36-1-like isoform X1 [Populus euphratica][more]
gi|449446023|ref|XP_004140771.1|3.8e-46100.00PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus][more]
gi|743928532|ref|XP_011008474.1|1.9e-4598.02PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica][more]
gi|224079093|ref|XP_002305746.1|1.9e-4598.0260S ribosomal protein L36-3 [Populus trichocarpa][more]
gi|224137042|ref|XP_002322479.1|2.4e-4597.03hypothetical protein POPTR_0015s12960g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000509Ribosomal_L36e
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G012780.1CmoCh18G012780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000509Ribosomal protein L36ePANTHERPTHR1011460S RIBOSOMAL PROTEIN L36coord: 1..101
score: 8.2
IPR000509Ribosomal protein L36ePFAMPF01158Ribosomal_L36ecoord: 8..101
score: 3.9
IPR000509Ribosomal protein L36ePROSITEPS01190RIBOSOMAL_L36Ecoord: 55..65
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh18G012780Cucsa.107920Cucumber (Gy14) v1cgycmoB0248
CmoCh18G012780CmaCh15G010950Cucurbita maxima (Rimu)cmacmoB292
CmoCh18G012780CmaCh02G010700Cucurbita maxima (Rimu)cmacmoB591
CmoCh18G012780Cla006168Watermelon (97103) v1cmowmB366
CmoCh18G012780Csa3G182240Cucumber (Chinese Long) v2cmocuB398
CmoCh18G012780MELO3C006922Melon (DHL92) v3.5.1cmomeB368
CmoCh18G012780ClCG05G008150Watermelon (Charleston Gray)cmowcgB359
CmoCh18G012780CSPI03G17060Wild cucumber (PI 183967)cmocpiB401
CmoCh18G012780Cp4.1LG13g02600Cucurbita pepo (Zucchini)cmocpeB384
CmoCh18G012780Cp4.1LG09g01030Cucurbita pepo (Zucchini)cmocpeB376
CmoCh18G012780Cp4.1LG05g06470Cucurbita pepo (Zucchini)cmocpeB414
CmoCh18G012780MELO3C006922.2Melon (DHL92) v3.6.1cmomedB421
CmoCh18G012780CsaV3_3G017240Cucumber (Chinese Long) v3cmocucB0476
CmoCh18G012780Cla97C05G090220Watermelon (97103) v2cmowmbB404
CmoCh18G012780Bhi01G000945Wax gourdcmowgoB0506
CmoCh18G012780Carg15128Silver-seed gourdcarcmoB1328
CmoCh18G012780Carg08408Silver-seed gourdcarcmoB0968
CmoCh18G012780Carg22110Silver-seed gourdcarcmoB1003
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh18G012780CmoCh15G011530Cucurbita moschata (Rifu)cmocmoB243
CmoCh18G012780CmoCh02G010880Cucurbita moschata (Rifu)cmocmoB333
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G012780Cucurbita moschata (Rifu)cmocmoB201
CmoCh18G012780Cucurbita moschata (Rifu)cmocmoB275
CmoCh18G012780Cucurbita maxima (Rimu)cmacmoB255
CmoCh18G012780Cucurbita maxima (Rimu)cmacmoB327
CmoCh18G012780Cucurbita maxima (Rimu)cmacmoB406
CmoCh18G012780Watermelon (Charleston Gray)cmowcgB363
CmoCh18G012780Cucurbita pepo (Zucchini)cmocpeB386
CmoCh18G012780Bottle gourd (USVL1VR-Ls)cmolsiB371
CmoCh18G012780Bottle gourd (USVL1VR-Ls)cmolsiB372
CmoCh18G012780Cucumber (Gy14) v2cgybcmoB324
CmoCh18G012780Cucumber (Gy14) v2cgybcmoB606
CmoCh18G012780Melon (DHL92) v3.6.1cmomedB424
CmoCh18G012780Cucumber (Chinese Long) v3cmocucB0491
CmoCh18G012780Watermelon (97103) v2cmowmbB410
CmoCh18G012780Wax gourdcmowgoB0508