Cp4.1LG09g01030 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g01030
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60S ribosomal protein L36
LocationCp4.1LG09 : 489633 .. 491357 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACTGGGGAAAGCCCATTAGTGTTTACTGGAGAAAGACCAGTAACGTTTGCTGGAGAAAGCTCAATAAGATTTACTGGAGAAAGCCCAATATAGCAATATAATATTAAGGAAGAAAGCCCAAAAGATCCTTTAGAGACCCAGCACTCGTCAATATCTCCTTATAAAGCAAAGCTTCTGAAACCCTAATCCTTCAGCTTCGCTTGCCTCCGATCACTTGGTTTTACTCCGTCCGAGAAGGTACGAACCCTTTTTTTCTCTCTCTTATACGATAATTGAACACAATATTTCTCAGATGGGTTGTTTGCTCTAGATTTTGATTCTAGGATATTGATTTCGTTCAAGAGTGTCAACTTTATTTGTGAATGTATTTTTGTTCTTTATTTTTTTGAACAGGCAATGGCTCCGAAGCAGCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGGCACATTGTTACAAAGAAAGAGCTGGCCCCGCGCCCCTCTGATCGTAAAGGAGTGAGTTAATTATGCACTAACTCAATCTAGGGTGTACATTGCGTTATCTTATATGCTCTTCAAACTATTCCGTTTTTATAATTTTATCTAGTTCATGTTCTTTTTGGGGATTTTAGTGATGGCTACAACCAGGGATTGCCTTAGACAAAATGAAACTTGGGAGTGTTGATTTATTGAGATATTTGTAATCTTATGTATATTATAAATTCATGTTATTTACTTAGCTCAAATGCAAGGGGATAGGTCTTGATCATACATTTGATTGTTTGTGAATTGGAAGCATGAACTGAAACCTACTAGTTTTGGTCCGTTATTAGTTTCCTTAAATGATTTTCCGACTGTTACCCTTCAAAAGTTCTTATTGACGGTAATGCTTAATGTTTGTTTGTGCCCAATTAGATCGTTAATGTTTATAAATAGTACAAGAATTCTCATTGAGACGCTTTTGAGCCATATGCATATAATTACTCTGTTTTCATATCATACAAATTTAAGCTTGTTTGTTTTGGAATGTTTTTGCTTCAATGTTATTTTAGCTGTTGATAGCTAGAAGTAATTGACATTAATGATTAATTTTGACATGAATTTGATTGATACCATAGAAAAGCAGCAAGAGAGTTCTCTTTGTGAGGAGTTTGATCCGGGAAGTTGCTGGTTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCTAAGAAGAAGAGAGAGGAGATGTCCAGCGTTCTCCGCAAGATGAGGTACTTATACAAGTCTTTCAATTTCTCTAACTATGATTGAATTGCTTCCTCGTAATATAACTTGATTCTTTGATCTTCCTTCTTGAAACAGAGCTGGTGGAGGCGGTGAGAAGAAGAAATGAAACAATGAAACGCGTGTGGTTAATTTTGAAGCTTCAAATTCCCATATTGTTAGAAACATGGTTTTAGATTGTTATGTTTGTTATCCAAAATCTTCAATGGATTCCTAATCCTTATGTTAGATGAGTTATGATGGCATGTATTAGAACTTTTAAGTCTTCTTTTTTGAAGGAAACTTGCGGCCATTTGTTTCTCTTTTGATATAATTGCCATTAGCTTCTTACAAGGAATGCACCCTTTTTTTTAATAGCCTCTGATAACCCTTTATTTGGTTCCACAAAAATGGTAGTAATTTCAAAGATTC

mRNA sequence

TACTGGGGAAAGCCCATTAGTGTTTACTGGAGAAAGACCAGTAACGTTTGCTGGAGAAAGCTCAATAAGATTTACTGGAGAAAGCCCAATATAGCAATATAATATTAAGGAAGAAAGCCCAAAAGATCCTTTAGAGACCCAGCACTCGTCAATATCTCCTTATAAAGCAAAGCTTCTGAAACCCTAATCCTTCAGCTTCGCTTGCCTCCGATCACTTGGTTTTACTCCGTCCGAGAAGGCAATGGCTCCGAAGCAGCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGGCACATTGTTACAAAGAAAGAGCTGGCCCCGCGCCCCTCTGATCGTAAAGGAAAAAGCAGCAAGAGAGTTCTCTTTGTGAGGAGTTTGATCCGGGAAGTTGCTGGTTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCTAAGAAGAAGAGAGAGGAGATGTCCAGCGTTCTCCGCAAGATGAGAGCTGGTGGAGGCGGTGAGAAGAAGAAATGAAACAATGAAACGCGTGTGGTTAATTTTGAAGCTTCAAATTCCCATATTGTTAGAAACATGGTTTTAGATTGTTATGTTTGTTATCCAAAATCTTCAATGGATTCCTAATCCTTATGTTAGATGAGTTATGATGGCATGTATTAGAACTTTTAAGTCTTCTTTTTTGAAGGAAACTTGCGGCCATTTGTTTCTCTTTTGATATAATTGCCATTAGCTTCTTACAAGGAATGCACCCTTTTTTTTAATAGCCTCTGATAACCCTTTATTTGGTTCCACAAAAATGGTAGTAATTTCAAAGATTC

Coding sequence (CDS)

ATGGCTCCGAAGCAGCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGGCACATTGTTACAAAGAAAGAGCTGGCCCCGCGCCCCTCTGATCGTAAAGGAAAAAGCAGCAAGAGAGTTCTCTTTGTGAGGAGTTTGATCCGGGAAGTTGCTGGTTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCTAAGAAGAAGAGAGAGGAGATGTCCAGCGTTCTCCGCAAGATGAGAGCTGGTGGAGGCGGTGAGAAGAAGAAATGA

Protein sequence

MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Homology
[Close]
BLAST of Cp4.1LG09g01030 vs. Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.5e-42
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]
BLAST of Cp4.1LG09g01030 vs. Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.7e-40
Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 1 

Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GG G  EKKK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108

[Close]
BLAST of Cp4.1LG09g01030 vs. Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-39
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 1 

Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG---GEKK 110
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+ GG    EKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

[Close]
BLAST of Cp4.1LG09g01030 vs. Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-33
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 1 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKR  FVR+LIREVAGF PYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92
          TELLKVGKDKRALKV + K+G H +  K+ E
Sbjct: 61 TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90

[Close]
BLAST of Cp4.1LG09g01030 vs. Swiss-Prot
Match: RL36_ULVCO (60S ribosomal protein L36 OS=Ulva compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.1e-29
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 1 

Query: 12  VGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKR 71
           VGLNKGH VTKK   PRPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 72  ALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGE 108
           ALK+ KRKLGTH R KKKREEM+ VLRKM+A   GE
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101

[Close]
BLAST of Cp4.1LG09g01030 vs. TrEMBL
Match: A0A0A0L6L0_CUCSA (60S ribosomal protein L36 OS=Cucumis sativus GN=Csa_3G182240 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.9e-50
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 110

[Close]
BLAST of Cp4.1LG09g01030 vs. TrEMBL
Match: E5GCU5_CUCME (60S ribosomal protein L36 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.9e-50
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 110

[Close]
BLAST of Cp4.1LG09g01030 vs. TrEMBL
Match: W9SA20_9ROSA (60S ribosomal protein L36 OS=Morus notabilis GN=L484_006508 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.5e-49
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK+SKRV FVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110

[Close]
BLAST of Cp4.1LG09g01030 vs. TrEMBL
Match: A9PD00_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0012s13060g PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.2e-49
Identity = 105/110 (95.45%), Postives = 109/110 (99.09%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMRA GGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRAAGGGEKKK 110

[Close]
BLAST of Cp4.1LG09g01030 vs. TrEMBL
Match: A9P9I5_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0015s12960g PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.2e-49
Identity = 105/110 (95.45%), Postives = 109/110 (99.09%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMR+ GGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRSAGGGEKKK 110

[Close]
BLAST of Cp4.1LG09g01030 vs. TAIR10
Match: AT3G53740.2 (AT3G53740.2 Ribosomal protein L36e family protein)

HSP 1 Score: 171.4 bits (433), Expect = 3.1e-43
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]
BLAST of Cp4.1LG09g01030 vs. TAIR10
Match: AT5G02450.1 (AT5G02450.1 Ribosomal protein L36e family protein)

HSP 1 Score: 164.5 bits (415), Expect = 3.8e-41
Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 1 

Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GG G  EKKK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108

[Close]
BLAST of Cp4.1LG09g01030 vs. TAIR10
Match: AT2G37600.1 (AT2G37600.1 Ribosomal protein L36e family protein)

HSP 1 Score: 163.3 bits (412), Expect = 8.4e-41
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 1 

Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG---GEKK 110
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+ GG    EKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

[Close]
BLAST of Cp4.1LG09g01030 vs. NCBI nr
Match: gi|449446023|ref|XP_004140771.1| (PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 4.2e-50
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 110

[Close]
BLAST of Cp4.1LG09g01030 vs. NCBI nr
Match: gi|703144718|ref|XP_010108352.1| (60S ribosomal protein L36-2 [Morus notabilis])

HSP 1 Score: 202.6 bits (514), Expect = 3.6e-49
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK+SKRV FVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110

[Close]
BLAST of Cp4.1LG09g01030 vs. NCBI nr
Match: gi|224137042|ref|XP_002322479.1| (hypothetical protein POPTR_0015s12960g [Populus trichocarpa])

HSP 1 Score: 201.8 bits (512), Expect = 6.1e-49
Identity = 105/110 (95.45%), Postives = 109/110 (99.09%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMR+ GGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRSAGGGEKKK 110

[Close]
BLAST of Cp4.1LG09g01030 vs. NCBI nr
Match: gi|224119984|ref|XP_002318214.1| (hypothetical protein POPTR_0012s13060g [Populus trichocarpa])

HSP 1 Score: 201.8 bits (512), Expect = 6.1e-49
Identity = 105/110 (95.45%), Postives = 109/110 (99.09%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMRA GGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRAAGGGEKKK 110

[Close]
BLAST of Cp4.1LG09g01030 vs. NCBI nr
Match: gi|743928532|ref|XP_011008474.1| (PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica])

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-48
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRA GG EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAAGGAEKKK 110

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g01030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL362_ARATH5.5e-4281.2560S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1[more]
RL363_ARATH6.7e-4082.8660S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1[more]
RL361_ARATH1.5e-3982.8660S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1[more]
RL36_DAUCA2.1e-3382.4260S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2[more]
RL36_ULVCO9.1e-2971.8860S ribosomal protein L36 OS=Ulva compressa GN=RL36 PE=3 SV=1[more]
BLAST of Cp4.1LG09g01030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6L0_CUCSA2.9e-5099.0960S ribosomal protein L36 OS=Cucumis sativus GN=Csa_3G182240 PE=3 SV=1[more]
E5GCU5_CUCME2.9e-5099.0960S ribosomal protein L36 OS=Cucumis melo subsp. melo PE=3 SV=1[more]
W9SA20_9ROSA2.5e-4996.3660S ribosomal protein L36 OS=Morus notabilis GN=L484_006508 PE=3 SV=1[more]
A9PD00_POPTR4.2e-4995.4560S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0012s13060g PE=2 SV=1[more]
A9P9I5_POPTR4.2e-4995.4560S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0015s12960g PE=2 SV=1[more]
BLAST of Cp4.1LG09g01030 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G53740.23.1e-4381.25 Ribosomal protein L36e family protein[more]
AT5G02450.13.8e-4182.86 Ribosomal protein L36e family protein[more]
AT2G37600.18.4e-4182.86 Ribosomal protein L36e family protein[more]
BLAST of Cp4.1LG09g01030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446023|ref|XP_004140771.1|4.2e-5099.09PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus][more]
gi|703144718|ref|XP_010108352.1|3.6e-4996.3660S ribosomal protein L36-2 [Morus notabilis][more]
gi|224137042|ref|XP_002322479.1|6.1e-4995.45hypothetical protein POPTR_0015s12960g [Populus trichocarpa][more]
gi|224119984|ref|XP_002318214.1|6.1e-4995.45hypothetical protein POPTR_0012s13060g [Populus trichocarpa][more]
gi|743928532|ref|XP_011008474.1|1.0e-4896.36PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004190 aspartic-type endopeptidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g01030.1Cp4.1LG09g01030.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g01030Cucsa.107920Cucumber (Gy14) v1cgycpeB0240
Cp4.1LG09g01030CmaCh15G010950Cucurbita maxima (Rimu)cmacpeB301
Cp4.1LG09g01030CmaCh18G012520Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g01030CmaCh02G010700Cucurbita maxima (Rimu)cmacpeB598
Cp4.1LG09g01030CmoCh18G012780Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g01030CmoCh15G011530Cucurbita moschata (Rifu)cmocpeB264
Cp4.1LG09g01030CmoCh02G010880Cucurbita moschata (Rifu)cmocpeB546
Cp4.1LG09g01030Cla006168Watermelon (97103) v1cpewmB032
Cp4.1LG09g01030Csa3G182240Cucumber (Chinese Long) v2cpecuB039
Cp4.1LG09g01030MELO3C006922Melon (DHL92) v3.5.1cpemeB043
Cp4.1LG09g01030ClCG05G008150Watermelon (Charleston Gray)cpewcgB046
Cp4.1LG09g01030CSPI03G17060Wild cucumber (PI 183967)cpecpiB034
Cp4.1LG09g01030MELO3C006922.2Melon (DHL92) v3.6.1cpemedB050
Cp4.1LG09g01030CsaV3_3G017240Cucumber (Chinese Long) v3cpecucB0039
Cp4.1LG09g01030Bhi01G000945Wax gourdcpewgoB0025
Cp4.1LG09g01030Carg22110Silver-seed gourdcarcpeB1038
Cp4.1LG09g01030Carg08408Silver-seed gourdcarcpeB0994
Cp4.1LG09g01030Carg15128Silver-seed gourdcarcpeB1373
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g01030Cp4.1LG13g02600Cucurbita pepo (Zucchini)cpecpeB021
Cp4.1LG09g01030Cp4.1LG14g06200Cucurbita pepo (Zucchini)cpecpeB023
Cp4.1LG09g01030Cp4.1LG05g06470Cucurbita pepo (Zucchini)cpecpeB057
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g01030Cucurbita pepo (Zucchini)cpecpeB052
Cp4.1LG09g01030Cucurbita maxima (Rimu)cmacpeB253
Cp4.1LG09g01030Cucurbita maxima (Rimu)cmacpeB339
Cp4.1LG09g01030Cucurbita moschata (Rifu)cmocpeB303
Cp4.1LG09g01030Cucumber (Chinese Long) v2cpecuB038
Cp4.1LG09g01030Bottle gourd (USVL1VR-Ls)cpelsiB035
Cp4.1LG09g01030Bottle gourd (USVL1VR-Ls)cpelsiB039
Cp4.1LG09g01030Watermelon (Charleston Gray)cpewcgB044
Cp4.1LG09g01030Cucumber (Gy14) v2cgybcpeB287
Cp4.1LG09g01030Cucumber (Gy14) v2cgybcpeB584
Cp4.1LG09g01030Melon (DHL92) v3.6.1cpemedB049
Cp4.1LG09g01030Cucumber (Chinese Long) v3cpecucB0045