Cucsa.107920 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.107920
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	60S ribosomal protein L36
Location	scaffold00931 : 176247 .. 178170 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGCTCTCCTAACCCTAACATTTCGCTTCCCTCGCCTCCGATCACTTGGTTTAGCTCCATACGAGAAGGTACGTCCACCAACCCTACTGCATGTTTTTCCTTTCTTATTCTTTCCTTCTCCCATGCCCAATAATTCAGCTGAAAATTTTACCAGATCGTTTATCTACCCTAGATTTGGACTCTTCTATATTGAGTTTATCCTTGAAAATCAAATTCATTTATTCTTGTTCAGTTCTAGTGTCTGTTTCTGTAATCGAAATCTTCTTAGAATGCTGTCTTACTGAAGTTTAATGGCCAAGATGCTATAACTTTCTAGTGAAATGCACTATTATTTTCTCTGGATCAAATGACTATGAGTAATTCTCAATTGTTTTGTCCGGGTGAAAAGTCCGTCAAGTTTTTTGTTCTCTTTTAAGTATATTTGAGCTTCTGGTTCGCTGTGTATTGGTTTTTTCTTGTCTTATAGATTATCTACTTTTTGAATAGGCAATGGCTCCGAAGCAGCCGAATACTGGTCTCTTTGTGGGACTTAACAAAGGACACATAGTTACCAAGAAAGAGTTGGCTCCCCGCCCCTCAGATCGTAAAGGAGTAAGTCGATTTTGTGTTTTGTTAATCTATAGTGACATTTGATAATCACAGAGGTTCTGAACTACTCCGTGTTTAAATTTTTATCGAGTGATTCTGTTCATCAATTCTCTTACGTGGGACTTTAGTGGTGGATGAAACGGGTTTGCCTGGTGCATGATGAAACTTGAGAGGGGCGATTTGAAACGACATTTTTAATAATTATCCTATGTGATATGAACTCAAATTAATACTCTACAGAAGCTCTAAAGCTAGCATGTAGAATGATTGAAAGTTTGTTTGCCTGGTTGGAACCTTATGATCAAGTGATTTTTAAAATCTGAAGTGATTTCAAATCCTATTTTTATTTAAAAATTTTCTTACCCTAAGGGTTAAAGTTTTACCGGATTTCATAGGATCTACAAGTAAATTAGAGAGTTAACCCGTAAATTCCTTACTTTTTTATCATTTTCAGTTACCATCTGAACTGAGATTTTAAATACATTCATTTCAACTATGATTTCAAATCACAGGATTTAAAAGTAATTTGAACTTCTTTTGTTCTGGATTATTGGTTTCTTTTGGAGATATTAGCTATTGGTGGATAGAATTAATTGTCACTAATGATTAATGTTTGCTTTAATTTTGATTGTTACCATAGAAAAGTAGCAAAAGAGTTCTCTTTGTGAGGAGTTTGATTCGTGAAGTTGCTGGCTTTGCCCCGTACGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGGGCACTTAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCCAAGAAGAAGAGAGAAGAGATGTCCAGCGTACTCCGCAAGATGAGGTAATTTTTAGACGGCCTTGAATTTTCTTTCCTCATTATGTTTGAATTTATCCTGTCAGTGTTAATATACATTGTAATTACGTTTCAAGCTGTATACTAAAACCTTTTCCTTTGAATATATTTTTGATACAGAGCTGGTGGAGGTGCCGAGAAGAAGAAATGAAACTAGTGTGGTTAAATGGAGCTTCTAATTCCCATATTGTTAGGGACATGTTCTAGATTTTGTTATTTTTTGTTATCCAGAATGATATTCAGTGGATTTTTGAACATTACCTTAGATGAATTGTGATGCTATTAGAACTTAAATTTAAATTTCTACAAGTCTTTTTTCCTTGATAGAACCTTACAGGTCATTTGTATCTCCTTTGATATATTTGCCATTATCTGGAAGAATTGCATCATTTATTTAGCCTCAGACAACCACTAGTTTTTGTATAGGGATTAATTGAGCCATTGCAGGATTTCTCGAATGAACTTAATTTCATAGTTTTAAAA

mRNA sequence

AATGCTCTCCTAACCCTAACATTTCGCTTCCCTCGCCTCCGATCACTTGGTTTAGCTCCATACGAGAAGGCAATGGCTCCGAAGCAGCCGAATACTGGTCTCTTTGTGGGACTTAACAAAGGACACATAGTTACCAAGAAAGAGTTGGCTCCCCGCCCCTCAGATCGTAAAGGAAAAAGTAGCAAAAGAGTTCTCTTTGTGAGGAGTTTGATTCGTGAAGTTGCTGGCTTTGCCCCGTACGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGGGCACTTAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCCAAGAAGAAGAGAGAAGAGATGTCCAGCGTACTCCGCAAGATGAGAGCTGGTGGAGGTGCCGAGAAGAAGAAATGAAACTAGTGTGGTTAAATGGAGCTTCTAATTCCCATATTGTTAGGGACATGTTCTAGATTTTGTTATTTTTTGTTATCCAGAATGATATTCAGTGGATTTTTGAACATTACCTTAGATGAATTGTGATGCTATTAGAACTTAAATTTAAATTTCTACAAGTCTTTTTTCCTTGATAGAACCTTACAGGTCATTTGTATCTCCTTTGATATATTTGCCATTATCTGGAAGAATTGCATCATTTATTTAGCCTCAGACAACCACTAGTTTTTGTATAGGGATTAATTGAGCCATTGCAGGATTTCTCGAATGAACTTAATTTCATAGTTTTAAAA

Coding sequence (CDS)

ATGGCTCCGAAGCAGCCGAATACTGGTCTCTTTGTGGGACTTAACAAAGGACACATAGTTACCAAGAAAGAGTTGGCTCCCCGCCCCTCAGATCGTAAAGGAAAAAGTAGCAAAAGAGTTCTCTTTGTGAGGAGTTTGATTCGTGAAGTTGCTGGCTTTGCCCCGTACGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGGGCACTTAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCCAAGAAGAAGAGAGAAGAGATGTCCAGCGTACTCCGCAAGATGAGAGCTGGTGGAGGTGCCGAGAAGAAGAAATGA

Protein sequence

MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK*

Homology

[Close]

BLAST of Cucsa.107920 vs. Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 5.9e-44
Identity = 90/112 (80.36%), Postives = 100/112 (89.29%), Query Frame = 1


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG--AEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGG   EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Cucsa.107920 vs. Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-42
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 1


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG---AEKK 110
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+ GG   AEKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

[Close]

BLAST of Cucsa.107920 vs. Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.2e-42
Identity = 86/104 (82.69%), Postives = 98/104 (94.23%), Query Frame = 1


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGG-GAEKKK 111
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GG GA +KK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKK 107

[Close]

BLAST of Cucsa.107920 vs. Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-35
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 1


Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKR  FVR+LIREVAGF PYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92
          TELLKVGKDKRALKV + K+G H +  K+ E
Sbjct: 61 TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90

[Close]

BLAST of Cucsa.107920 vs. Swiss-Prot
Match: RL36_ULVCO (60S ribosomal protein L36 OS=Ulva compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-30
Identity = 68/96 (70.83%), Postives = 78/96 (81.25%), Query Frame = 1


Query: 12  VGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKR 71
           VGLNKGH VTKK   PRPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 72  ALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAE 108
           ALK+ KRKLGTH R KKKREEM+ VLRKM+A    E
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101

[Close]

BLAST of Cucsa.107920 vs. TrEMBL
Match: E5GCU5_CUCME (60S ribosomal protein L36 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 110

[Close]

BLAST of Cucsa.107920 vs. TrEMBL
Match: A0A0A0L6L0_CUCSA (60S ribosomal protein L36 OS=Cucumis sativus GN=Csa_3G182240 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 110

[Close]

BLAST of Cucsa.107920 vs. TrEMBL
Match: A9PCN6_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0004s05590g PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.4e-52
Identity = 107/110 (97.27%), Postives = 109/110 (99.09%), Query Frame = 1


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRA GGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAAGGAEKKK 110

[Close]

BLAST of Cucsa.107920 vs. TrEMBL
Match: W9SA20_9ROSA (60S ribosomal protein L36 OS=Morus notabilis GN=L484_006508 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.7e-51
Identity = 105/110 (95.45%), Postives = 108/110 (98.18%), Query Frame = 1


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK+SKRV FVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRAGGG EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110

[Close]

BLAST of Cucsa.107920 vs. TrEMBL
Match: A9P9I5_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0015s12960g PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.6e-51
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 1


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMR+ GG EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRSAGGGEKKK 110

[Close]

BLAST of Cucsa.107920 vs. TAIR10
Match: AT3G53740.2 (AT3G53740.2 Ribosomal protein L36e family protein)

HSP 1 Score: 177.9 bits (450), Expect = 3.3e-45
Identity = 90/112 (80.36%), Postives = 100/112 (89.29%), Query Frame = 1


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG--AEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGG   EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Cucsa.107920 vs. TAIR10
Match: AT2G37600.1 (AT2G37600.1 Ribosomal protein L36e family protein)

HSP 1 Score: 173.7 bits (439), Expect = 6.3e-44
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 1


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG---AEKK 110
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+ GG   AEKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

[Close]

BLAST of Cucsa.107920 vs. TAIR10
Match: AT5G02450.1 (AT5G02450.1 Ribosomal protein L36e family protein)

HSP 1 Score: 172.2 bits (435), Expect = 1.8e-43
Identity = 86/104 (82.69%), Postives = 98/104 (94.23%), Query Frame = 1


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGG-GAEKKK 111
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GG GA +KK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKK 107

[Close]

BLAST of Cucsa.107920 vs. NCBI nr
Match: gi|449446023|ref|XP_004140771.1| (PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 110

[Close]

BLAST of Cucsa.107920 vs. NCBI nr
Match: gi|743928532|ref|XP_011008474.1| (PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica])

HSP 1 Score: 211.5 bits (537), Expect = 7.7e-52
Identity = 107/110 (97.27%), Postives = 109/110 (99.09%), Query Frame = 1


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRA GGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAAGGAEKKK 110

[Close]

BLAST of Cucsa.107920 vs. NCBI nr
Match: gi|224079093|ref|XP_002305746.1| (60S ribosomal protein L36-3 [Populus trichocarpa])

HSP 1 Score: 211.5 bits (537), Expect = 7.7e-52
Identity = 107/110 (97.27%), Postives = 109/110 (99.09%), Query Frame = 1


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRA GGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAAGGAEKKK 110

[Close]

BLAST of Cucsa.107920 vs. NCBI nr
Match: gi|703144718|ref|XP_010108352.1| (60S ribosomal protein L36-2 [Morus notabilis])

HSP 1 Score: 209.1 bits (531), Expect = 3.8e-51
Identity = 105/110 (95.45%), Postives = 108/110 (98.18%), Query Frame = 1


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGK+SKRV FVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRAGGG EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110

[Close]

BLAST of Cucsa.107920 vs. NCBI nr
Match: gi|224137042|ref|XP_002322479.1| (hypothetical protein POPTR_0015s12960g [Populus trichocarpa])

HSP 1 Score: 208.4 bits (529), Expect = 6.5e-51
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 1


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMR+ GG EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRSAGGGEKKK 110

The following BLAST results are available for this feature:

BLAST of Cucsa.107920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL362_ARATH	5.9e-44	80.36	60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1	[more]
RL361_ARATH	1.1e-42	83.81	60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1	[more]
RL363_ARATH	3.2e-42	82.69	60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1	[more]
RL36_DAUCA	5.0e-35	82.42	60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2	[more]
RL36_ULVCO	1.7e-30	70.83	60S ribosomal protein L36 OS=Ulva compressa GN=RL36 PE=3 SV=1	[more]

BLAST of Cucsa.107920 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCU5_CUCME	2.2e-53	100.00	60S ribosomal protein L36 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0L6L0_CUCSA	2.2e-53	100.00	60S ribosomal protein L36 OS=Cucumis sativus GN=Csa_3G182240 PE=3 SV=1	[more]
A9PCN6_POPTR	5.4e-52	97.27	60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0004s05590g PE=2 SV=1	[more]
W9SA20_9ROSA	2.7e-51	95.45	60S ribosomal protein L36 OS=Morus notabilis GN=L484_006508 PE=3 SV=1	[more]
A9P9I5_POPTR	4.6e-51	94.55	60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0015s12960g PE=2 SV=1	[more]

BLAST of Cucsa.107920 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53740.2	3.3e-45	80.36	Ribosomal protein L36e family protein	[more]
AT2G37600.1	6.3e-44	83.81	Ribosomal protein L36e family protein	[more]
AT5G02450.1	1.8e-43	82.69	Ribosomal protein L36e family protein	[more]

BLAST of Cucsa.107920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446023\|ref\|XP_004140771.1\|	3.1e-53	100.00	PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus]	[more]
gi\|743928532\|ref\|XP_011008474.1\|	7.7e-52	97.27	PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica]	[more]
gi\|224079093\|ref\|XP_002305746.1\|	7.7e-52	97.27	60S ribosomal protein L36-3 [Populus trichocarpa]	[more]
gi\|703144718\|ref\|XP_010108352.1\|	3.8e-51	95.45	60S ribosomal protein L36-2 [Morus notabilis]	[more]
gi\|224137042\|ref\|XP_002322479.1\|	6.5e-51	94.55	hypothetical protein POPTR_0015s12960g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000509	Ribosomal_L36e
IPR000509	Ribosomal_L36e

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.107920.1	Cucsa.107920.1	mRNA
Cucsa.107920.2	Cucsa.107920.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000509	Ribosomal protein L36e	PANTHER	PTHR10114	60S RIBOSOMAL PROTEIN L36	coord: 1..108 score: 2.1
IPR000509	Ribosomal protein L36e	PFAM	PF01158	Ribosomal_L36e	coord: 8..101 score: 3.8
IPR000509	Ribosomal protein L36e	PROSITE	PS01190	RIBOSOMAL_L36E	coord: 55..65 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.107920	Cla006168	Watermelon (97103) v1	cgywmB152
Cucsa.107920	Csa3G182240	Cucumber (Chinese Long) v2	cgycuB132
Cucsa.107920	MELO3C006922	Melon (DHL92) v3.5.1	cgymeB142
Cucsa.107920	ClCG05G008150	Watermelon (Charleston Gray)	cgywcgB152
Cucsa.107920	CSPI03G17060	Wild cucumber (PI 183967)	cgycpiB133
Cucsa.107920	CmaCh02G010700	Cucurbita maxima (Rimu)	cgycmaB0251
Cucsa.107920	CmoCh02G010880	Cucurbita moschata (Rifu)	cgycmoB0250
Cucsa.107920	CmoCh18G012780	Cucurbita moschata (Rifu)	cgycmoB0248
Cucsa.107920	Cp4.1LG09g01030	Cucurbita pepo (Zucchini)	cgycpeB0240
Cucsa.107920	Cp4.1LG05g06470	Cucurbita pepo (Zucchini)	cgycpeB0244
Cucsa.107920	MELO3C006922.2	Melon (DHL92) v3.6.1	cgymedB142
Cucsa.107920	CsaV3_3G017240	Cucumber (Chinese Long) v3	cgycucB137
Cucsa.107920	Cla97C05G090220	Watermelon (97103) v2	cgywmbB147
Cucsa.107920	Bhi01G000945	Wax gourd	cgywgoB170
Cucsa.107920	Carg08408	Silver-seed gourd	carcgyB0794
Cucsa.107920	Carg22110	Silver-seed gourd	carcgyB0828
Cucsa.107920	Carg15128	Silver-seed gourd	carcgyB1105

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.107920	Cucurbita maxima (Rimu)	cgycmaB0248
Cucsa.107920	Cucurbita maxima (Rimu)	cgycmaB0249
Cucsa.107920	Cucurbita moschata (Rifu)	cgycmoB0247
Cucsa.107920	Cucurbita pepo (Zucchini)	cgycpeB0241
Cucsa.107920	Bottle gourd (USVL1VR-Ls)	cgylsiB143