Carg08408 (gene) Silver-seed gourd

Overview
NameCarg08408
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S ribosomal protein L36
LocationCucurbita_argyrosperma_scaffold_022 : 117820 .. 118981 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTTTATTGAAGCAGGTAATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACATAGTCACCAAGAAGGAGTTGGCTCCACGACCCTCTGATCGCAAAGGAGTAAGTCAATCACCACATAACTAGATCTTTTGGAATTTCCTTCAATGGGGAAACGTAAGGCGTTGGGTTTTCTCTGTTTAAACATGTTTTGCCAGGGATGTTAGTTAATTTTTTAGTTGCTTGAGGAATTAGCTTATTTTATTTCATTTTATTGGACCAGTTCTAAACTGTAGTTACATACTTTTAACATCATGCTGAAAGTCTTGTTATATTGCTCATCTATCGGCATAGTTTTTGCACCAAATGTGAGATTGTGTTCTCATGTTACCGTTTTTATATCTATTAATATAGAAATCAAGCAAAAGGGTTCTTTTTGTCCGGAGCTTGATCCGGGAAGTTGCTGGTTTCGCCCCATATGAAAAGAGAATCACTGAGCTTCTTAAAGTTGGTAAAGACAAGCGTGCTTTGAAGGTAGCCAAAAGAAAGCTTGGAACTCACAAGAGGGCCAAGAAGAAGCGTGAGGAGATGTCCAGTGTGCTAAGAAAGATGAGGTAATCCAATCTGTCCTTTTAACAACGCAAAACTGCTGTTTTTACATAAACATGGGGGTCTGAATCATGTTTTGTTTGTAACTAAATCGAATGATTCACATCTGGTTATTGTTCGAGTCGTAATTCATAAGTATTATGATTAGCATTCTGATTCCATTTCTGGATATGTTGTATTTTTGCAGGGCCGGTGGAGGTGGTGAGAAGAAGAAGTGAGATTACTACACTTGTGCTCATATATTCAAAGTTTCTCTCTGGCTACTCTTTTTTTTGTTGTTTTACTACTGAATTTGTTAAGAGACTGAACTCTTTGCTGTAGACTATTTCAGTTTTGTTATCTTTAAACTCGTTTTACTAACACCCAATTTTGTTATGGCTCTGTTATTTTCAATGTCGCGGTTCGGTGAATTAATAGCCTGTCTATGTTTTGAGTGTACGGATCACTCTCAGATGATCATCACATAGCTATTGAGAACGAATTATATCAGATGGTTCTATTTTTCAAATCTTTCGACCTTTTAATATTAGTTCTATAATAATCCATTATTTTGTT

mRNA sequence

AGTTTTATTGAAGCAGGTAATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACATAGTCACCAAGAAGGAGTTGGCTCCACGACCCTCTGATCGCAAAGGAAAATCAAGCAAAAGGGTTCTTTTTGTCCGGAGCTTGATCCGGGAAGTTGCTGGTTTCGCCCCATATGAAAAGAGAATCACTGAGCTTCTTAAAGTTGGTAAAGACAAGCGTGCTTTGAAGGTAGCCAAAAGAAAGCTTGGAACTCACAAGAGGGCCAAGAAGAAGCGTGAGGAGATGTCCAGTGTGCTAAGAAAGATGAGGGCCGGTGGAGGTGGTGAGAAGAAGAAGTGAGATTACTACACTTGTGCTCATATATTCAAAGTTTCTCTCTGGCTACTCTTTTTTTTGTTGTTTTACTACTGAATTTGTTAAGAGACTGAACTCTTTGCTGTAGACTATTTCAGTTTTGTTATCTTTAAACTCGTTTTACTAACACCCAATTTTGTTATGGCTCTGTTATTTTCAATGTCGCGGTTCGGTGAATTAATAGCCTGTCTATGTTTTGAGTGTACGGATCACTCTCAGATGATCATCACATAGCTATTGAGAACGAATTATATCAGATGGTTCTATTTTTCAAATCTTTCGACCTTTTAATATTAGTTCTATAATAATCCATTATTTTGTT

Coding sequence (CDS)

ATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACATAGTCACCAAGAAGGAGTTGGCTCCACGACCCTCTGATCGCAAAGGAAAATCAAGCAAAAGGGTTCTTTTTGTCCGGAGCTTGATCCGGGAAGTTGCTGGTTTCGCCCCATATGAAAAGAGAATCACTGAGCTTCTTAAAGTTGGTAAAGACAAGCGTGCTTTGAAGGTAGCCAAAAGAAAGCTTGGAACTCACAAGAGGGCCAAGAAGAAGCGTGAGGAGATGTCCAGTGTGCTAAGAAAGATGAGGGCCGGTGGAGGTGGTGAGAAGAAGAAGTGA

Protein sequence

MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Homology
[Close]
BLAST of Carg08408 vs. NCBI nr
Match: XP_004140771.1 (PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] >XP_004152381.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] >XP_008436991.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis melo] >XP_008439254.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis melo] >ADN34294.1 60S ribosomal protein l36e [Cucumis melo subsp. melo] >KGN50297.1 hypothetical protein Csa_5G166410 [Cucumis sativus] >KGN57388.1 hypothetical protein Csa_3G182240 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRA 87
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg08408 vs. NCBI nr
Match: XP_022945858.1 (60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958049.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958050.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022995694.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023532485.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023532486.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023541175.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRA 87
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg08408 vs. NCBI nr
Match: XP_002305746.1 (60S ribosomal protein L36-2 [Populus trichocarpa] >ABK94139.1 unknown [Populus trichocarpa] >ABK95527.1 unknown [Populus trichocarpa] >PNT39743.1 hypothetical protein POPTR_004G057000v3 [Populus trichocarpa] >PNT39744.1 hypothetical protein POPTR_004G057000v3 [Populus trichocarpa])

HSP 1 Score: 169.1 bits (427), Expect = 8.5e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRA 87
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg08408 vs. NCBI nr
Match: XP_011008473.1 (PREDICTED: 60S ribosomal protein L36-1-like isoform X1 [Populus euphratica])

HSP 1 Score: 169.1 bits (427), Expect = 8.5e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRA 87
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg08408 vs. NCBI nr
Match: XP_011008474.1 (PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica])

HSP 1 Score: 169.1 bits (427), Expect = 8.5e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRA 87
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg08408 vs. TAIR10
Match: AT2G37600.1 (Ribosomal protein L36e family protein)

HSP 1 Score: 141.0 bits (354), Expect = 4.5e-34
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 8  TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
          TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8  TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68 KDKRALKVAKRKLGTHKRA 87
          KDKRALKVAKRKLGTHKRA
Sbjct: 68 KDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg08408 vs. TAIR10
Match: AT3G53740.2 (Ribosomal protein L36e family protein)

HSP 1 Score: 141.0 bits (354), Expect = 4.5e-34
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1  MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRA 87
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg08408 vs. TAIR10
Match: AT5G02450.1 (Ribosomal protein L36e family protein)

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-32
Identity = 66/79 (83.54%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 8  TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
          TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4  TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68 KDKRALKVAKRKLGTHKRA 87
          KDKRALKVAKRKLGTHKRA
Sbjct: 64 KDKRALKVAKRKLGTHKRA 82

[Close]
BLAST of Carg08408 vs. Swiss-Prot
Match: sp|P52866|RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2)

HSP 1 Score: 145.2 bits (365), Expect = 4.3e-34
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKR  FVR+LIREVAGF PYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLG 82
          TELLKVGKDKRALKV + K+G
Sbjct: 61 TELLKVGKDKRALKVRQEKVG 81

[Close]
BLAST of Carg08408 vs. Swiss-Prot
Match: sp|O80929|RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 8.1e-33
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 8  TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
          TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8  TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68 KDKRALKVAKRKLGTHKRA 87
          KDKRALKVAKRKLGTHKRA
Sbjct: 68 KDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg08408 vs. Swiss-Prot
Match: sp|Q9M352|RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 8.1e-33
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1  MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRA 87
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg08408 vs. Swiss-Prot
Match: sp|Q9LZ57|RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-31
Identity = 66/79 (83.54%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 8  TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
          TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4  TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68 KDKRALKVAKRKLGTHKRA 87
          KDKRALKVAKRKLGTHKRA
Sbjct: 64 KDKRALKVAKRKLGTHKRA 82

[Close]
BLAST of Carg08408 vs. Swiss-Prot
Match: sp|Q9LRB8|RL36_ULVCO (60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.9e-22
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 12 VGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKR 71
          VGLNKGH VTKK   PRPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6  VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 72 ALKVAKRKLGTHKR 86
          ALK+ KRKLGTH R
Sbjct: 66 ALKMCKRKLGTHMR 79

[Close]
BLAST of Carg08408 vs. TrEMBL
Match: tr|A0A0A0L6L0|A0A0A0L6L0_CUCSA (60S ribosomal protein L36 OS=Cucumis sativus OX=3659 GN=Csa_3G182240 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.5e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRA 87
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg08408 vs. TrEMBL
Match: tr|A0A1S3AYD7|A0A1S3AYD7_CUCME (60S ribosomal protein L36 OS=Cucumis melo OX=3656 GN=LOC103484093 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.5e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRA 87
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg08408 vs. TrEMBL
Match: tr|E5GCU5|E5GCU5_CUCME (60S ribosomal protein L36 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.5e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRA 87
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg08408 vs. TrEMBL
Match: tr|A9PCN6|A9PCN6_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_004G057000v3 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.6e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRA 87
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg08408 vs. TrEMBL
Match: tr|A9P9I5|A9P9I5_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_015G145800v3 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.3e-39
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRA 87
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

The following BLAST results are available for this feature:
BLAST of Carg08408 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140771.13.8e-39100.00PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] >XP_004152381.1 PR... [more]
XP_022945858.13.8e-39100.0060S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958049.1 60S riboso... [more]
XP_002305746.18.5e-3998.8460S ribosomal protein L36-2 [Populus trichocarpa] >ABK94139.1 unknown [Populus t... [more]
XP_011008473.18.5e-3998.84PREDICTED: 60S ribosomal protein L36-1-like isoform X1 [Populus euphratica][more]
XP_011008474.18.5e-3998.84PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica][more]
BLAST of Carg08408 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37600.14.5e-3486.08Ribosomal protein L36e family protein[more]
AT3G53740.24.5e-3480.23Ribosomal protein L36e family protein[more]
AT5G02450.11.1e-3283.54Ribosomal protein L36e family protein[more]
BLAST of Carg08408 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P52866|RL36_DAUCA4.3e-3488.8960S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2[more]
sp|O80929|RL361_ARATH8.1e-3386.0860S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1[more]
sp|Q9M352|RL362_ARATH8.1e-3380.2360S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1[more]
sp|Q9LZ57|RL363_ARATH2.0e-3183.5460S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1[more]
sp|Q9LRB8|RL36_ULVCO2.9e-2272.9760S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1[more]
BLAST of Carg08408 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6L0|A0A0A0L6L0_CUCSA2.5e-39100.0060S ribosomal protein L36 OS=Cucumis sativus OX=3659 GN=Csa_3G182240 PE=3 SV=1[more]
tr|A0A1S3AYD7|A0A1S3AYD7_CUCME2.5e-39100.0060S ribosomal protein L36 OS=Cucumis melo OX=3656 GN=LOC103484093 PE=3 SV=1[more]
tr|E5GCU5|E5GCU5_CUCME2.5e-39100.0060S ribosomal protein L36 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
tr|A9PCN6|A9PCN6_POPTR5.6e-3998.8460S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_004G057000v3 P... [more]
tr|A9P9I5|A9P9I5_POPTR7.3e-3997.6760S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_015G145800v3 P... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR000509Ribosomal_L36e
IPR038097L36e_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08408-RACarg08408-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038097Ribosomal protein L36e domain superfamilyGENE3DG3DSA:1.10.10.1760coord: 1..106
e-value: 1.5E-43
score: 149.3
IPR000509Ribosomal protein L36ePFAMPF01158Ribosomal_L36ecoord: 8..101
e-value: 1.2E-42
score: 144.0
IPR000509Ribosomal protein L36ePANTHERPTHR1011460S RIBOSOMAL PROTEIN L36coord: 1..103
IPR000509Ribosomal protein L36ePROSITEPS01190RIBOSOMAL_L36Ecoord: 55..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..110
NoneNo IPR availablePANTHERPTHR10114:SF060S RIBOSOMAL PROTEIN L36coord: 1..103

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg08408Cla006168Watermelon (97103) v1carwmB0708
Carg08408Csa3G182240Cucumber (Chinese Long) v2carcuB0730
Carg08408MELO3C006922Melon (DHL92) v3.5.1carmeB0709
Carg08408ClCG05G008150Watermelon (Charleston Gray)carwcgB0690
Carg08408CSPI03G17060Wild cucumber (PI 183967)carcpiB0745
Carg08408Cucsa.107920Cucumber (Gy14) v1carcgyB0794
Carg08408CmaCh15G010950Cucurbita maxima (Rimu)carcmaB0992
Carg08408CmaCh02G010700Cucurbita maxima (Rimu)carcmaB0999
Carg08408CmoCh15G011530Cucurbita moschata (Rifu)carcmoB0964
Carg08408CmoCh02G010880Cucurbita moschata (Rifu)carcmoB0971
Carg08408CmoCh18G012780Cucurbita moschata (Rifu)carcmoB0968
Carg08408Cp4.1LG09g01030Cucurbita pepo (Zucchini)carcpeB0994
Carg08408Cp4.1LG13g02600Cucurbita pepo (Zucchini)carcpeB0997
Carg08408Cp4.1LG05g06470Cucurbita pepo (Zucchini)carcpeB1002
Carg08408MELO3C006922.2Melon (DHL92) v3.6.1carmedB0722
Carg08408CsaV3_3G017240Cucumber (Chinese Long) v3carcucB0748
Carg08408Cla97C05G090220Watermelon (97103) v2carwmbB0743
Carg08408Bhi01G000945Wax gourdcarwgoB0836
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg08408Carg23182Silver-seed gourdcarcarB505
Carg08408Carg22110Silver-seed gourdcarcarB583
Carg08408Carg15128Silver-seed gourdcarcarB585
The following block(s) are covering this gene:
GeneOrganismBlock
Carg08408Wax gourdcarwgoB0831
Carg08408Cucumber (Gy14) v2carcgybB0707
Carg08408Cucurbita maxima (Rimu)carcmaB0994
Carg08408Cucurbita maxima (Rimu)carcmaB0996
Carg08408Cucurbita moschata (Rifu)carcmoB0966
Carg08408Cucurbita pepo (Zucchini)carcpeB0998
Carg08408Bottle gourd (USVL1VR-Ls)carlsiB650