CmaCh15G010950 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh15G010950
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description60S ribosomal protein L36
LocationCma_Chr15 : 6959433 .. 6961293 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCGTATCAACGTATATAAAGCTATTGTAAGTCAGTTCCAGTATATAAATATATCGTATCAACGTATATAAAGCTATTTTAAATTAGTTCTAGTATGTAAATGTATCGTATCAACGTATATAACAATATTATAACCTAAAAAAAAAAAGGAAAAAAAAAACATTCCAGCCACATACCAATTAATAAACTCAATTTTGAGTTAGGACTAAAGAAATTTCAGAGACCCAATTCAACTCGTGTATAATATATATATATATATAATAAACATTTGTGTAAATTTTTAAAAAAATTGGATAAAATGAAAAAAGGGTTTATTATGAAGCGAGTATATGTATGTATATATAACGATTTTCGCATGCAATACAGCCCAATTAAAGTCTGGCCCATTAACAGGCATCCTTATATAAAACCAACTCCAATCTCCAACCCTAGTTTTTCATTTCGTCGTGCGTCGGAGATCCGGAGACTCATTGAACAGGTAACGGCGATTTCTAGTCCCATCGATCAATTTTTCAAAGCACGACACCCGTAGTTTATTTCAGCGTTCAAATCTAAGCTTATTTCTGTGTTTTCCAAGTTTTTAGAAGAACAATTCTGTTGTTTCTCTGTTTCTTGCTAATGATATACTTGTAGTGAGTTACTGTTCTTGAGTATAACGTATTTTCCAATTTGCGTCTTGAATCCTTGTCGCTGATTAGCTTGCAATATCTGTACGTGTCATAATGATTTTAACGATACAGCAGGATTTTTTTTATTTAATTGTTAATTTTTTTTTTGTGTGATTGGGACTATGGTGCACACGTCGTGGGGTTTTCCCTTTTCTACTCGGGAAAGTTTTATTCTATTTGGAGCTCTTCAGCTGAGAATGTATGCAACGTTGAATGTGCTTTGTGAAATTAGTTTGTTTGTGTATGGAATTTTGCAATGTTATTACTTGATTTAAACTCTTCGTTTTAGTTACATAGATCGAATTTCAGGAGTCTTATGATAATTAAAACGAACTCTATCATTATCTTTGCAGCTTTAGGTTTTTGCAATTGAACTTAATTTTGACAGAGTGCACTATTTGCTTTTTGTTTAAACAGGTAATGGCTCCAAAACAGCCGAATACAGGCCTCTTTGTTGGGCTCAACAAGGGCCACATAGTTACCAAGAAGGAGTTGGCCCCACGGCCCTCTGATCGTAAGGGAGTAAGTCAATAAACTAGTGACTAGATGCTTTAGAATTCTTATTGATGGTGGAATTGGAAGGTTTTGTGTTTTCTCTGTTATGTTCTACTAGGGAGTGTTTTTAGGATCTTGAGGAACTAGCTTGCATTATTCCATTTTCTGGAACCAGCTCTGAACTGTAGTTACATTCTTTTAAGATCATGTTGAAAAATACTTGTTACTATGTAGAAGTATGGTTTTTCTCAAAATTTAAGATTGTTTTCTCTAATTTCTGTTTGTTATTCCAATTTATGTAGAAAGCAAGTAAAAGGGTTCTCTTCGTCCGGAGCTTGATCCGGGAAGTTGCTGGTTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAAGTTGGAAAGGACAAGCGAGCACTGAAGGTGGCCAAACGAAAACTCGGAACTCACAAGAGAGCTAAGAAGAAGCGAGAGGAGATGTCCAACGTCCTAAGAAAGATGAGGTAATCCTTCTTGCTTTGTAGAAAGGCTAATCTGCTGCTATTGTTAGACATGGGGTGTGAAAAATGGTTTGTTTGTGTGAAAGTCGGCATGTTCACATTTGTGTTGTGAATCAAATCTTGTGAGTTAGTAATTGTCATTCTGATTACGTTTTGGATGATTGTGTTGTATTTGCAGGGCCGGTGGAGGTGGTG

mRNA sequence

ATGTATCGTATCAACGTATATAAAGCTATTGTAATGGCTCCAAAACAGCCGAATACAGGCCTCTTTGTTGGGCTCAACAAGGGCCACATAGTTACCAAGAAGGAGTTGGCCCCACGGCCCTCTGATCGTAAGGGAAAAGCAAGTAAAAGGGTTCTCTTCGTCCGGAGCTTGATCCGGGAAGTTGCTGGTTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAAGTTGGAAAGGACAAGCGAGCACTGAAGGTGGCCAAACGAAAACTCGGAACTCACAAGAGAGCTAAGAAGAAGCGAGAGGAGATGTCCAACGTCCTAAGAAAGATGAGGTAATCCTTCTTGCTTTGTAGAAAGGCTAATCTGCTGCTATTGTTAGACATGGGGTGTGAAAAATGGTTTGTTTGTGTGAAAGTCGGCATGTTCACATTTGTGTTGTGAATCAAATCTTGTGAGTTAGTAATTGTCATTCTGATTACGTTTTGGATGATTGTGTTGTATTTGCAGGGCCGGTGGAGGTGGTG

Coding sequence (CDS)

ATGTATCGTATCAACGTATATAAAGCTATTGTAATGGCTCCAAAACAGCCGAATACAGGCCTCTTTGTTGGGCTCAACAAGGGCCACATAGTTACCAAGAAGGAGTTGGCCCCACGGCCCTCTGATCGTAAGGGAAAAGCAAGTAAAAGGGTTCTCTTCGTCCGGAGCTTGATCCGGGAAGTTGCTGGTTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAAGTTGGAAAGGACAAGCGAGCACTGAAGGTGGCCAAACGAAAACTCGGAACTCACAAGAGAGCTAAGAAGAAGCGAGAGGAGATGTCCAACGTCCTAAGAAAGATGAGGTAA

Protein sequence

MYRINVYKAIVMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR
Homology
[Close]
BLAST of CmaCh15G010950 vs. Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.8e-38
Identity = 82/101 (81.19%), Postives = 91/101 (90.10%), Query Frame = 1 

Query: 12  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 71
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 72  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101

[Close]
BLAST of CmaCh15G010950 vs. Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.8e-38
Identity = 81/94 (86.17%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 19  TGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRITELLKVG 78
           TGLFVGLNKGH+VT++ELAPRP+ RKGK SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 79  KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101

[Close]
BLAST of CmaCh15G010950 vs. Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 9.2e-37
Identity = 79/94 (84.04%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 19  TGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRITELLKVG 78
           TGLFVGLNKGH+VTK+E  PRP++RKGK SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 79  KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97

[Close]
BLAST of CmaCh15G010950 vs. Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-33
Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 1 

Query: 12  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 71
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK SKR  FVR+LIREVAGF PYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 72  TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 103
           TELLKVGKDKRALKV + K+G H +  K+ E
Sbjct: 61  TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90

[Close]
BLAST of CmaCh15G010950 vs. Swiss-Prot
Match: RL36_ULVCO (60S ribosomal protein L36 OS=Ulva compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-27
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 23  VGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKR 82
           VGLNKGH VTKK   PRPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 83  ALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           ALK+ KRKLGTH R KKKREEM+ VLRKM+
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQ 95

[Close]
BLAST of CmaCh15G010950 vs. TrEMBL
Match: A9PCN6_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0004s05590g PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.7e-45
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 1 

Query: 12  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 71
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 72  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 101

[Close]
BLAST of CmaCh15G010950 vs. TrEMBL
Match: A9P9I5_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0015s12960g PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.8e-45
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 12  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 71
           MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 72  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 101

[Close]
BLAST of CmaCh15G010950 vs. TrEMBL
Match: A0A0A0L6L0_CUCSA (60S ribosomal protein L36 OS=Cucumis sativus GN=Csa_3G182240 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.9e-45
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 12  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 71
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 72  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 101

[Close]
BLAST of CmaCh15G010950 vs. TrEMBL
Match: E5GCU5_CUCME (60S ribosomal protein L36 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.9e-45
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 12  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 71
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 72  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 101

[Close]
BLAST of CmaCh15G010950 vs. TrEMBL
Match: A9PD00_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0012s13060g PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 8.4e-45
Identity = 97/101 (96.04%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 12  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 71
           MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 72  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSNVLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMR 101

[Close]
BLAST of CmaCh15G010950 vs. TAIR10
Match: AT2G37600.1 (AT2G37600.1 Ribosomal protein L36e family protein)

HSP 1 Score: 158.7 bits (400), Expect = 2.1e-39
Identity = 81/94 (86.17%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 19  TGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRITELLKVG 78
           TGLFVGLNKGH+VT++ELAPRP+ RKGK SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 79  KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101

[Close]
BLAST of CmaCh15G010950 vs. TAIR10
Match: AT3G53740.2 (AT3G53740.2 Ribosomal protein L36e family protein)

HSP 1 Score: 158.7 bits (400), Expect = 2.1e-39
Identity = 82/101 (81.19%), Postives = 91/101 (90.10%), Query Frame = 1 

Query: 12  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 71
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK SKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 72  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101

[Close]
BLAST of CmaCh15G010950 vs. TAIR10
Match: AT5G02450.1 (AT5G02450.1 Ribosomal protein L36e family protein)

HSP 1 Score: 154.1 bits (388), Expect = 5.2e-38
Identity = 79/94 (84.04%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 19  TGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRITELLKVG 78
           TGLFVGLNKGH+VTK+E  PRP++RKGK SKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 79  KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97

[Close]
BLAST of CmaCh15G010950 vs. NCBI nr
Match: gi|743928530|ref|XP_011008473.1| (PREDICTED: 60S ribosomal protein L36-1-like isoform X1 [Populus euphratica])

HSP 1 Score: 191.4 bits (485), Expect = 8.3e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 12  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 71
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 72  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 101

[Close]
BLAST of CmaCh15G010950 vs. NCBI nr
Match: gi|743928532|ref|XP_011008474.1| (PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica])

HSP 1 Score: 191.4 bits (485), Expect = 8.3e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 12  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 71
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 72  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 101

[Close]
BLAST of CmaCh15G010950 vs. NCBI nr
Match: gi|224079093|ref|XP_002305746.1| (60S ribosomal protein L36-3 [Populus trichocarpa])

HSP 1 Score: 189.9 bits (481), Expect = 2.4e-45
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 1 

Query: 12  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 71
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 72  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 101

[Close]
BLAST of CmaCh15G010950 vs. NCBI nr
Match: gi|224137042|ref|XP_002322479.1| (hypothetical protein POPTR_0015s12960g [Populus trichocarpa])

HSP 1 Score: 188.7 bits (478), Expect = 5.4e-45
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 12  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 71
           MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 72  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 101

[Close]
BLAST of CmaCh15G010950 vs. NCBI nr
Match: gi|449446023|ref|XP_004140771.1| (PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 7.1e-45
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 12  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 71
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 72  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR 113
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMR
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 101

The following BLAST results are available for this feature:
BLAST of CmaCh15G010950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL362_ARATH3.8e-3881.1960S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1[more]
RL361_ARATH3.8e-3886.1760S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1[more]
RL363_ARATH9.2e-3784.0460S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1[more]
RL36_DAUCA4.7e-3382.4260S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2[more]
RL36_ULVCO3.0e-2773.3360S ribosomal protein L36 OS=Ulva compressa GN=RL36 PE=3 SV=1[more]
BLAST of CmaCh15G010950 vs. TrEMBL
Match NameE-valueIdentityDescription
A9PCN6_POPTR1.7e-4599.0160S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0004s05590g PE=2 SV=1[more]
A9P9I5_POPTR3.8e-4597.0360S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0015s12960g PE=2 SV=1[more]
A0A0A0L6L0_CUCSA4.9e-4598.0260S ribosomal protein L36 OS=Cucumis sativus GN=Csa_3G182240 PE=3 SV=1[more]
E5GCU5_CUCME4.9e-4598.0260S ribosomal protein L36 OS=Cucumis melo subsp. melo PE=3 SV=1[more]
A9PD00_POPTR8.4e-4596.0460S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0012s13060g PE=2 SV=1[more]
BLAST of CmaCh15G010950 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37600.12.1e-3986.17 Ribosomal protein L36e family protein[more]
AT3G53740.22.1e-3981.19 Ribosomal protein L36e family protein[more]
AT5G02450.15.2e-3884.04 Ribosomal protein L36e family protein[more]
BLAST of CmaCh15G010950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|743928530|ref|XP_011008473.1|8.3e-46100.00PREDICTED: 60S ribosomal protein L36-1-like isoform X1 [Populus euphratica][more]
gi|743928532|ref|XP_011008474.1|8.3e-46100.00PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica][more]
gi|224079093|ref|XP_002305746.1|2.4e-4599.0160S ribosomal protein L36-3 [Populus trichocarpa][more]
gi|224137042|ref|XP_002322479.1|5.4e-4597.03hypothetical protein POPTR_0015s12960g [Populus trichocarpa][more]
gi|449446023|ref|XP_004140771.1|7.1e-4598.02PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000509Ribosomal_L36e
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0002181 cytoplasmic translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G010950.1CmaCh15G010950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000509Ribosomal protein L36ePANTHERPTHR1011460S RIBOSOMAL PROTEIN L36coord: 1..112
score: 4.1
IPR000509Ribosomal protein L36ePFAMPF01158Ribosomal_L36ecoord: 19..112
score: 1.7
IPR000509Ribosomal protein L36ePROSITEPS01190RIBOSOMAL_L36Ecoord: 66..76
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh15G010950Cucsa.129560Cucumber (Gy14) v1cgycmaB0349
CmaCh15G010950Cla003639Watermelon (97103) v1cmawmB275
CmaCh15G010950Cla006168Watermelon (97103) v1cmawmB269
CmaCh15G010950Csa5G166410Cucumber (Chinese Long) v2cmacuB298
CmaCh15G010950MELO3C005472Melon (DHL92) v3.5.1cmameB261
CmaCh15G010950ClCG01G004450Watermelon (Charleston Gray)cmawcgB259
CmaCh15G010950ClCG05G008150Watermelon (Charleston Gray)cmawcgB266
CmaCh15G010950CSPI05G07230Wild cucumber (PI 183967)cmacpiB303
CmaCh15G010950CmoCh16G001270Cucurbita moschata (Rifu)cmacmoB289
CmaCh15G010950CmoCh02G010880Cucurbita moschata (Rifu)cmacmoB299
CmaCh15G010950CmoCh15G011530Cucurbita moschata (Rifu)cmacmoB287
CmaCh15G010950CmoCh18G012780Cucurbita moschata (Rifu)cmacmoB292
CmaCh15G010950Lsi09G004680Bottle gourd (USVL1VR-Ls)cmalsiB267
CmaCh15G010950Cp4.1LG09g01030Cucurbita pepo (Zucchini)cmacpeB301
CmaCh15G010950Cp4.1LG13g02600Cucurbita pepo (Zucchini)cmacpeB305
CmaCh15G010950Cp4.1LG14g06200Cucurbita pepo (Zucchini)cmacpeB307
CmaCh15G010950Cp4.1LG05g06470Cucurbita pepo (Zucchini)cmacpeB330
CmaCh15G010950MELO3C005472.2Melon (DHL92) v3.6.1cmamedB296
CmaCh15G010950CsaV3_5G004670Cucumber (Chinese Long) v3cmacucB0352
CmaCh15G010950Cla97C01G004650Watermelon (97103) v2cmawmbB288
CmaCh15G010950CsGy5G004660Cucumber (Gy14) v2cgybcmaB608
CmaCh15G010950Carg08408Silver-seed gourdcarcmaB0992
CmaCh15G010950Carg15128Silver-seed gourdcarcmaB1365
CmaCh15G010950Carg23182Silver-seed gourdcarcmaB0757
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh15G010950CmaCh16G001170Cucurbita maxima (Rimu)cmacmaB300
CmaCh15G010950CmaCh18G012520Cucurbita maxima (Rimu)cmacmaB306
CmaCh15G010950CmaCh02G010700Cucurbita maxima (Rimu)cmacmaB313
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh15G010950Wax gourdcmawgoB0370
CmaCh15G010950Cucurbita maxima (Rimu)cmacmaB242
CmaCh15G010950Melon (DHL92) v3.5.1cmameB250
CmaCh15G010950Bottle gourd (USVL1VR-Ls)cmalsiB290
CmaCh15G010950Melon (DHL92) v3.6.1cmamedB284