Carg15128 (gene) Silver-seed gourd

Overview
NameCarg15128
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S ribosomal protein L36
LocationCucurbita_argyrosperma_scaffold_078 : 678965 .. 680415 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGATGGCTCCGAAGCAGCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGACACATTGTTACGAAGAAAGAGTTGGCTCCCCGCCCCTCAGATCGTAAAGGAGTGAGTTAATTTTGTGTATTGTTCAATGTACATTTTGTAATGATAGATATTCGTTAAATTTTTATTGAGTTCATTGTATGCATCTCTTTACTTATTTGGAATTTTAATGGAGGATAAAGGTGGGGTTTACCTGTTGCGAAATGAAGCTTGAGAGGGGTTATTTAGTAGGACTTCTTTTTTAAAAAAATATATTTATCGTATGTAGTTATTACTTTACAAAAGCTTAAAAGCAAGGGGATAGATTTTCATCATATATTTGAAGTCTTATCGAAGACCTGTTTGGTTCATATCAGTATCATTCATCGATATTTTAGCTGCTACCTTATGGACACTTGCGCTCAATTAGATTGATGATGTTGGAAATTAGCGAAGGAGTGTACTTTGTGGGGCTCTTGAGCATATGCATATAGTCAATTTGCTTCTTTTATCATACAAATTTAATGTGGTTTTGCTCTGGATTATTGGTTTTTTTTTTTCAAAGTTATTTTAGTTGGTAGATACAAGCAATTGACTTTCATGATTTATGCTTGCCTGAATTTGATTGATACCATAGAAAAGTAGCAAAAGAGTTCTCTTCGTGAGGAATTTGATCCGGGAAGTTGCTGGGTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGGAAGGACAAGAGAGCACTAAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCAAAGAAGAAGCGAGAGGAGATGTCCAGCGTTCTCCGCAAAATGAGGTATTCTTAGAAAGGCTTCCAATTCCCCTTCTTATCATTGAATTTAATCCTCATTCAATTTTGACATGTTTTCAATGATTACACTTCATAAAAACACATTTCTAATGGGATTTTTTTCTCTGAATTAATTTTTGATACAGAGCTGGTGGAGGCGGCGAGAAGAAGAAATGAAACTTGTGTGGTTAATTTTGAGGCTTCAAGTTCCATTTTGTTAGAGACACGTTCTAGATTGTTATTGTTGTTACCCAGAATGAAATTCAGTGCATTTTTTAACCTTGTGTTAGGTGAACTATGACAGGTATTAGAACGTAAATTTTTAATTTCTTCAAGTCTTCTTTTTTTAATGAACTCTATAGCCATTTGTATCCCTTTTGATACATTTTCATTAGCTTGGAAGGAATGCAGCGTTTCATTAGCTTGAAATTATTGTACATGTGATTTTCTGACCGAAGGCACATGCTAAACACAGGCATTAGTTGATTTTCTAATAGGAATTGAATGTTGGAAGCTGAGAGATCTAAATTTAAGTGGTAGCTTAAGTTCAAATTTGTGCAATCTTGATTTTAAAAGATTTTTATATTATTAATAATATA

mRNA sequence

GCGATGGCTCCGAAGCAGCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGACACATTGTTACGAAGAAAGAGTTGGCTCCCCGCCCCTCAGATCGTAAAGGAAAAAGTAGCAAAAGAGTTCTCTTCGTGAGGAATTTGATCCGGGAAGTTGCTGGGTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGGAAGGACAAGAGAGCACTAAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCAAAGAAGAAGCGAGAGGAGATGTCCAGCGTTCTCCGCAAAATGAGAGCTGGTGGAGGCGGCGAGAAGAAGAAATGAAACTTGTGTGGTTAATTTTGAGGCTTCAAGTTCCATTTTGTTAGAGACACGTTCTAGATTGTTATTGTTGTTACCCAGAATGAAATTCAGTGCATTTTTTAACCTTGTGTTAGGTGAACTATGACAGGTATTAGAACGTAAATTTTTAATTTCTTCAAGTCTTCTTTTTTTAATGAACTCTATAGCCATTTGTATCCCTTTTGATACATTTTCATTAGCTTGGAAGGAATGCAGCGTTTCATTAGCTTGAAATTATTGTACATGTGATTTTCTGACCGAAGGCACATGCTAAACACAGGCATTAGTTGATTTTCTAATAGGAATTGAATGTTGGAAGCTGAGAGATCTAAATTTAAGTGGTAGCTTAAGTTCAAATTTGTGCAATCTTGATTTTAAAAGATTTTTATATTATTAATAATATA

Coding sequence (CDS)

GCGATGGCTCCGAAGCAGCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGACACATTGTTACGAAGAAAGAGTTGGCTCCCCGCCCCTCAGATCGTAAAGGAAAAAGTAGCAAAAGAGTTCTCTTCGTGAGGAATTTGATCCGGGAAGTTGCTGGGTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGGAAGGACAAGAGAGCACTAAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCAAAGAAGAAGCGAGAGGAGATGTCCAGCGTTCTCCGCAAAATGAGAGCTGGTGGAGGCGGCGAGAAGAAGAAATGA

Protein sequence

AMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Homology
[Close]
BLAST of Carg15128 vs. NCBI nr
Match: XP_022923053.1 (60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923054.1 60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923055.1 60S ribosomal protein L36-2-like isoform X2 [Cucurbita moschata] >XP_022923056.1 60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022985002.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_022985003.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_022985004.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023552431.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-39
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 2  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60

Query: 62 TELLKVGKDKRALKVAKRKLGTHKRA 88
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg15128 vs. NCBI nr
Match: XP_004140771.1 (PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] >XP_004152381.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] >XP_008436991.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis melo] >XP_008439254.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis melo] >ADN34294.1 60S ribosomal protein l36e [Cucumis melo subsp. melo] >KGN50297.1 hypothetical protein Csa_5G166410 [Cucumis sativus] >KGN57388.1 hypothetical protein Csa_3G182240 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 6.5e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 2  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 62 TELLKVGKDKRALKVAKRKLGTHKRA 88
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg15128 vs. NCBI nr
Match: XP_022945858.1 (60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958049.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958050.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022995694.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023532485.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023532486.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023541175.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.5 bits (428), Expect = 6.5e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 2  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 62 TELLKVGKDKRALKVAKRKLGTHKRA 88
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg15128 vs. NCBI nr
Match: XP_002305746.1 (60S ribosomal protein L36-2 [Populus trichocarpa] >ABK94139.1 unknown [Populus trichocarpa] >ABK95527.1 unknown [Populus trichocarpa] >PNT39743.1 hypothetical protein POPTR_004G057000v3 [Populus trichocarpa] >PNT39744.1 hypothetical protein POPTR_004G057000v3 [Populus trichocarpa])

HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 2  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 62 TELLKVGKDKRALKVAKRKLGTHKRA 88
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg15128 vs. NCBI nr
Match: XP_011008473.1 (PREDICTED: 60S ribosomal protein L36-1-like isoform X1 [Populus euphratica])

HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 2  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 62 TELLKVGKDKRALKVAKRKLGTHKRA 88
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg15128 vs. TAIR10
Match: AT3G53740.2 (Ribosomal protein L36e family protein)

HSP 1 Score: 143.3 bits (360), Expect = 9.1e-35
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 2  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61
          M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+RNLI+EVAG APYEKRI
Sbjct: 1  MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 62 TELLKVGKDKRALKVAKRKLGTHKRA 88
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg15128 vs. TAIR10
Match: AT2G37600.1 (Ribosomal protein L36e family protein)

HSP 1 Score: 141.4 bits (355), Expect = 3.5e-34
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 9  TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVG 68
          TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8  TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 69 KDKRALKVAKRKLGTHKRA 88
          KDKRALKVAKRKLGTHKRA
Sbjct: 68 KDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg15128 vs. TAIR10
Match: AT5G02450.1 (Ribosomal protein L36e family protein)

HSP 1 Score: 138.7 bits (348), Expect = 2.2e-33
Identity = 67/79 (84.81%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 9  TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVG 68
          TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+RNLI+EVAG APYEKRITELLKVG
Sbjct: 4  TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 69 KDKRALKVAKRKLGTHKRA 88
          KDKRALKVAKRKLGTHKRA
Sbjct: 64 KDKRALKVAKRKLGTHKRA 82

[Close]
BLAST of Carg15128 vs. Swiss-Prot
Match: sp|P52866|RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2)

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-34
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 0 

Query: 2  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKR  FVRNLIREVAGF PYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 62 TELLKVGKDKRALKVAKRKLG 83
          TELLKVGKDKRALKV + K+G
Sbjct: 61 TELLKVGKDKRALKVRQEKVG 81

[Close]
BLAST of Carg15128 vs. Swiss-Prot
Match: sp|Q9M352|RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 2  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61
          M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+RNLI+EVAG APYEKRI
Sbjct: 1  MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 62 TELLKVGKDKRALKVAKRKLGTHKRA 88
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg15128 vs. Swiss-Prot
Match: sp|O80929|RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 6.2e-33
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 9  TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVG 68
          TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8  TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 69 KDKRALKVAKRKLGTHKRA 88
          KDKRALKVAKRKLGTHKRA
Sbjct: 68 KDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg15128 vs. Swiss-Prot
Match: sp|Q9LZ57|RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.0e-32
Identity = 67/79 (84.81%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 9  TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVG 68
          TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+RNLI+EVAG APYEKRITELLKVG
Sbjct: 4  TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 69 KDKRALKVAKRKLGTHKRA 88
          KDKRALKVAKRKLGTHKRA
Sbjct: 64 KDKRALKVAKRKLGTHKRA 82

[Close]
BLAST of Carg15128 vs. Swiss-Prot
Match: sp|Q9LRB8|RL36_ULVCO (60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.5e-22
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 0 

Query: 13 VGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 72
          VGLNKGH VTKK   PRPS RKG  S+RV  VR ++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6  VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 73 ALKVAKRKLGTHKR 87
          ALK+ KRKLGTH R
Sbjct: 66 ALKMCKRKLGTHMR 79

[Close]
BLAST of Carg15128 vs. TrEMBL
Match: tr|A0A0A0L6L0|A0A0A0L6L0_CUCSA (60S ribosomal protein L36 OS=Cucumis sativus OX=3659 GN=Csa_3G182240 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.3e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 2  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 62 TELLKVGKDKRALKVAKRKLGTHKRA 88
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg15128 vs. TrEMBL
Match: tr|A0A1S3AYD7|A0A1S3AYD7_CUCME (60S ribosomal protein L36 OS=Cucumis melo OX=3656 GN=LOC103484093 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.3e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 2  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 62 TELLKVGKDKRALKVAKRKLGTHKRA 88
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg15128 vs. TrEMBL
Match: tr|E5GCU5|E5GCU5_CUCME (60S ribosomal protein L36 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.3e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 2  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 62 TELLKVGKDKRALKVAKRKLGTHKRA 88
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg15128 vs. TrEMBL
Match: tr|A9PCN6|A9PCN6_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_004G057000v3 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 9.6e-39
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 2  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 62 TELLKVGKDKRALKVAKRKLGTHKRA 88
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

[Close]
BLAST of Carg15128 vs. TrEMBL
Match: tr|A9P9I5|A9P9I5_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_015G145800v3 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.3e-38
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 2  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61
          MAPKQPNTGLFVGLNKGH+VTKK+LAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 62 TELLKVGKDKRALKVAKRKLGTHKRA 88
          TELLKVGKDKRALKVAKRKLGTHKRA
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRA 86

The following BLAST results are available for this feature:
BLAST of Carg15128 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022923053.11.7e-39100.0060S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923054.1... [more]
XP_004140771.16.5e-3998.84PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] >XP_004152381.1 PR... [more]
XP_022945858.16.5e-3998.8460S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958049.1 60S riboso... [more]
XP_002305746.11.5e-3897.6760S ribosomal protein L36-2 [Populus trichocarpa] >ABK94139.1 unknown [Populus t... [more]
XP_011008473.11.5e-3897.67PREDICTED: 60S ribosomal protein L36-1-like isoform X1 [Populus euphratica][more]
BLAST of Carg15128 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G53740.29.1e-3581.40Ribosomal protein L36e family protein[more]
AT2G37600.13.5e-3486.08Ribosomal protein L36e family protein[more]
AT5G02450.12.2e-3384.81Ribosomal protein L36e family protein[more]
BLAST of Carg15128 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P52866|RL36_DAUCA1.1e-3490.1260S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2[more]
sp|Q9M352|RL362_ARATH1.6e-3381.4060S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1[more]
sp|O80929|RL361_ARATH6.2e-3386.0860S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1[more]
sp|Q9LZ57|RL363_ARATH4.0e-3284.8160S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1[more]
sp|Q9LRB8|RL36_ULVCO6.5e-2272.9760S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1[more]
BLAST of Carg15128 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6L0|A0A0A0L6L0_CUCSA4.3e-3998.8460S ribosomal protein L36 OS=Cucumis sativus OX=3659 GN=Csa_3G182240 PE=3 SV=1[more]
tr|A0A1S3AYD7|A0A1S3AYD7_CUCME4.3e-3998.8460S ribosomal protein L36 OS=Cucumis melo OX=3656 GN=LOC103484093 PE=3 SV=1[more]
tr|E5GCU5|E5GCU5_CUCME4.3e-3998.8460S ribosomal protein L36 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
tr|A9PCN6|A9PCN6_POPTR9.6e-3997.6760S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_004G057000v3 P... [more]
tr|A9P9I5|A9P9I5_POPTR1.3e-3896.5160S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_015G145800v3 P... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR038097L36e_sf
IPR000509Ribosomal_L36e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15128-RACarg15128-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000509Ribosomal protein L36ePFAMPF01158Ribosomal_L36ecoord: 9..102
e-value: 1.2E-42
score: 144.0
IPR000509Ribosomal protein L36ePANTHERPTHR1011460S RIBOSOMAL PROTEIN L36coord: 2..104
IPR000509Ribosomal protein L36ePROSITEPS01190RIBOSOMAL_L36Ecoord: 56..66
IPR038097Ribosomal protein L36e domain superfamilyGENE3DG3DSA:1.10.10.1760coord: 2..107
e-value: 2.3E-43
score: 148.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..111
NoneNo IPR availablePANTHERPTHR10114:SF060S RIBOSOMAL PROTEIN L36coord: 2..104

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg15128Cla006168Watermelon (97103) v1carwmB0990
Carg15128Csa3G182240Cucumber (Chinese Long) v2carcuB1004
Carg15128MELO3C006922Melon (DHL92) v3.5.1carmeB0966
Carg15128ClCG05G008150Watermelon (Charleston Gray)carwcgB0965
Carg15128CSPI03G17060Wild cucumber (PI 183967)carcpiB1027
Carg15128Cucsa.107920Cucumber (Gy14) v1carcgyB1105
Carg15128CmaCh15G010950Cucurbita maxima (Rimu)carcmaB1365
Carg15128CmaCh18G012520Cucurbita maxima (Rimu)carcmaB1368
Carg15128CmaCh02G010700Cucurbita maxima (Rimu)carcmaB1369
Carg15128CmoCh15G011530Cucurbita moschata (Rifu)carcmoB1325
Carg15128CmoCh02G010880Cucurbita moschata (Rifu)carcmoB1329
Carg15128CmoCh18G012780Cucurbita moschata (Rifu)carcmoB1328
Carg15128Cp4.1LG05g06470Cucurbita pepo (Zucchini)carcpeB1377
Carg15128Cp4.1LG09g01030Cucurbita pepo (Zucchini)carcpeB1373
Carg15128Cp4.1LG13g02600Cucurbita pepo (Zucchini)carcpeB1375
Carg15128Cp4.1LG14g06200Cucurbita pepo (Zucchini)carcpeB1376
Carg15128MELO3C006922.2Melon (DHL92) v3.6.1carmedB0975
Carg15128CsaV3_3G017240Cucumber (Chinese Long) v3carcucB1032
Carg15128Cla97C05G090220Watermelon (97103) v2carwmbB1042
Carg15128Bhi01G000945Wax gourdcarwgoB1159
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg15128Carg08408Silver-seed gourdcarcarB585
Carg15128Carg22110Silver-seed gourdcarcarB594
The following block(s) are covering this gene:
GeneOrganismBlock
Carg15128Cucumber (Gy14) v2carcgybB0976
Carg15128Cucurbita maxima (Rimu)carcmaB1366
Carg15128Cucurbita moschata (Rifu)carcmoB1326
Carg15128Bottle gourd (USVL1VR-Ls)carlsiB903
Carg15128Watermelon (97103) v2carwmbB1041