Carg15128-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCGATGGCTCCGAAGCAGCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGACACATTGTTACGAAGAAAGAGTTGGCTCCCCGCCCCTCAGATCGTAAAGGAGTGAGTTAATTTTGTGTATTGTTCAATGTACATTTTGTAATGATAGATATTCGTTAAATTTTTATTGAGTTCATTGTATGCATCTCTTTACTTATTTGGAATTTTAATGGAGGATAAAGGTGGGGTTTACCTGTTGCGAAATGAAGCTTGAGAGGGGTTATTTAGTAGGACTTCTTTTTTAAAAAAATATATTTATCGTATGTAGTTATTACTTTACAAAAGCTTAAAAGCAAGGGGATAGATTTTCATCATATATTTGAAGTCTTATCGAAGACCTGTTTGGTTCATATCAGTATCATTCATCGATATTTTAGCTGCTACCTTATGGACACTTGCGCTCAATTAGATTGATGATGTTGGAAATTAGCGAAGGAGTGTACTTTGTGGGGCTCTTGAGCATATGCATATAGTCAATTTGCTTCTTTTATCATACAAATTTAATGTGGTTTTGCTCTGGATTATTGGTTTTTTTTTTTCAAAGTTATTTTAGTTGGTAGATACAAGCAATTGACTTTCATGATTTATGCTTGCCTGAATTTGATTGATACCATAGAAAAGTAGCAAAAGAGTTCTCTTCGTGAGGAATTTGATCCGGGAAGTTGCTGGGTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGGAAGGACAAGAGAGCACTAAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCAAAGAAGAAGCGAGAGGAGATGTCCAGCGTTCTCCGCAAAATGAGGTATTCTTAGAAAGGCTTCCAATTCCCCTTCTTATCATTGAATTTAATCCTCATTCAATTTTGACATGTTTTCAATGATTACACTTCATAAAAACACATTTCTAATGGGATTTTTTTCTCTGAATTAATTTTTGATACAGAGCTGGTGGAGGCGGCGAGAAGAAGAAATGAAACTTGTGTGGTTAATTTTGAGGCTTCAAGTTCCATTTTGTTAGAGACACGTTCTAGATTGTTATTGTTGTTACCCAGAATGAAATTCAGTGCATTTTTTAACCTTGTGTTAGGTGAACTATGACAGGTATTAGAACGTAAATTTTTAATTTCTTCAAGTCTTCTTTTTTTAATGAACTCTATAGCCATTTGTATCCCTTTTGATACATTTTCATTAGCTTGGAAGGAATGCAGCGTTTCATTAGCTTGAAATTATTGTACATGTGATTTTCTGACCGAAGGCACATGCTAAACACAGGCATTAGTTGATTTTCTAATAGGAATTGAATGTTGGAAGCTGAGAGATCTAAATTTAAGTGGTAGCTTAAGTTCAAATTTGTGCAATCTTGATTTTAAAAGATTTTTATATTATTAATAATATA GCGATGGCTCCGAAGCAGCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGACACATTGTTACGAAGAAAGAGTTGGCTCCCCGCCCCTCAGATCGTAAAGGAAAAAGTAGCAAAAGAGTTCTCTTCGTGAGGAATTTGATCCGGGAAGTTGCTGGGTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGGAAGGACAAGAGAGCACTAAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCAAAGAAGAAGCGAGAGGAGATGTCCAGCGTTCTCCGCAAAATGAGAGCTGGTGGAGGCGGCGAGAAGAAGAAATGAAACTTGTGTGGTTAATTTTGAGGCTTCAAGTTCCATTTTGTTAGAGACACGTTCTAGATTGTTATTGTTGTTACCCAGAATGAAATTCAGTGCATTTTTTAACCTTGTGTTAGGTGAACTATGACAGGTATTAGAACGTAAATTTTTAATTTCTTCAAGTCTTCTTTTTTTAATGAACTCTATAGCCATTTGTATCCCTTTTGATACATTTTCATTAGCTTGGAAGGAATGCAGCGTTTCATTAGCTTGAAATTATTGTACATGTGATTTTCTGACCGAAGGCACATGCTAAACACAGGCATTAGTTGATTTTCTAATAGGAATTGAATGTTGGAAGCTGAGAGATCTAAATTTAAGTGGTAGCTTAAGTTCAAATTTGTGCAATCTTGATTTTAAAAGATTTTTATATTATTAATAATATA GCGATGGCTCCGAAGCAGCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGACACATTGTTACGAAGAAAGAGTTGGCTCCCCGCCCCTCAGATCGTAAAGGAAAAAGTAGCAAAAGAGTTCTCTTCGTGAGGAATTTGATCCGGGAAGTTGCTGGGTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGGAAGGACAAGAGAGCACTAAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCAAAGAAGAAGCGAGAGGAGATGTCCAGCGTTCTCCGCAAAATGAGAGCTGGTGGAGGCGGCGAGAAGAAGAAATGA AMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
BLAST of Carg15128-RA vs. NCBI nr
Match: XP_022923053.1 (60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923054.1 60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923055.1 60S ribosomal protein L36-2-like isoform X2 [Cucurbita moschata] >XP_022923056.1 60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022985002.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_022985003.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_022985004.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023552431.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 171.4 bits (433), Expect = 1.7e-39 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Carg15128-RA vs. NCBI nr
Match: XP_004140771.1 (PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] >XP_004152381.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] >XP_008436991.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis melo] >XP_008439254.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis melo] >ADN34294.1 60S ribosomal protein l36e [Cucumis melo subsp. melo] >KGN50297.1 hypothetical protein Csa_5G166410 [Cucumis sativus] >KGN57388.1 hypothetical protein Csa_3G182240 [Cucumis sativus]) HSP 1 Score: 169.5 bits (428), Expect = 6.5e-39 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Carg15128-RA vs. NCBI nr
Match: XP_022945858.1 (60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958049.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958050.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022995694.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023532485.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023532486.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023541175.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 169.5 bits (428), Expect = 6.5e-39 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Carg15128-RA vs. NCBI nr
Match: XP_002305746.1 (60S ribosomal protein L36-2 [Populus trichocarpa] >ABK94139.1 unknown [Populus trichocarpa] >ABK95527.1 unknown [Populus trichocarpa] >PNT39743.1 hypothetical protein POPTR_004G057000v3 [Populus trichocarpa] >PNT39744.1 hypothetical protein POPTR_004G057000v3 [Populus trichocarpa]) HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38 Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Carg15128-RA vs. NCBI nr
Match: XP_011008473.1 (PREDICTED: 60S ribosomal protein L36-1-like isoform X1 [Populus euphratica]) HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38 Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Carg15128-RA vs. TAIR10
Match: AT3G53740.2 (Ribosomal protein L36e family protein) HSP 1 Score: 143.3 bits (360), Expect = 9.1e-35 Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 0
BLAST of Carg15128-RA vs. TAIR10
Match: AT2G37600.1 (Ribosomal protein L36e family protein) HSP 1 Score: 141.4 bits (355), Expect = 3.5e-34 Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0
BLAST of Carg15128-RA vs. TAIR10
Match: AT5G02450.1 (Ribosomal protein L36e family protein) HSP 1 Score: 138.7 bits (348), Expect = 2.2e-33 Identity = 67/79 (84.81%), Postives = 75/79 (94.94%), Query Frame = 0
BLAST of Carg15128-RA vs. Swiss-Prot
Match: sp|P52866|RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2) HSP 1 Score: 147.1 bits (370), Expect = 1.1e-34 Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 0
BLAST of Carg15128-RA vs. Swiss-Prot
Match: sp|Q9M352|RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33 Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 0
BLAST of Carg15128-RA vs. Swiss-Prot
Match: sp|O80929|RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 6.2e-33 Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0
BLAST of Carg15128-RA vs. Swiss-Prot
Match: sp|Q9LZ57|RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 4.0e-32 Identity = 67/79 (84.81%), Postives = 75/79 (94.94%), Query Frame = 0
BLAST of Carg15128-RA vs. Swiss-Prot
Match: sp|Q9LRB8|RL36_ULVCO (60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 6.5e-22 Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 0
BLAST of Carg15128-RA vs. TrEMBL
Match: tr|A0A0A0L6L0|A0A0A0L6L0_CUCSA (60S ribosomal protein L36 OS=Cucumis sativus OX=3659 GN=Csa_3G182240 PE=3 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 4.3e-39 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Carg15128-RA vs. TrEMBL
Match: tr|A0A1S3AYD7|A0A1S3AYD7_CUCME (60S ribosomal protein L36 OS=Cucumis melo OX=3656 GN=LOC103484093 PE=3 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 4.3e-39 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Carg15128-RA vs. TrEMBL
Match: tr|E5GCU5|E5GCU5_CUCME (60S ribosomal protein L36 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 4.3e-39 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Carg15128-RA vs. TrEMBL
Match: tr|A9PCN6|A9PCN6_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_004G057000v3 PE=2 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 9.6e-39 Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Carg15128-RA vs. TrEMBL
Match: tr|A9P9I5|A9P9I5_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_015G145800v3 PE=2 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 1.3e-38 Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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