CmoCh15G014640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G014640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nonphotochemical quenching 6
Location	Cmo_Chr15 : 9942949 .. 9943416 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAATCTGCAAGTTTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATGTGATAAAATCACGGCCATCCCCTCGTAGTCTTTGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGACTGGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

mRNA sequence

ATGGCACAATCTGCAAGTTTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATGTGATAAAATCACGGCCATCCCCTCGTAGTCTTTGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGACTGGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Coding sequence (CDS)

ATGGCACAATCTGCAAGTTTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATGTGATAAAATCACGGCCATCCCCTCGTAGTCTTTGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGACTGGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Homology

[Close]

BLAST of CmoCh15G014640 vs. Swiss-Prot
Match: YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-09
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 1


Query: 60  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 119
           L+  L+   + S S     G ISLL GF+++  +S   G  G   +IAA + V  TE  +
Sbjct: 13  LIKNLNNKLYYSLSELTT-GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAATELTS 72

Query: 120 RFYYSRPK-VTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           +  YS  K +   + L NNFK+G TYGLF+DAFKL S
Sbjct: 73  KIVYSSHKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

[Close]

BLAST of CmoCh15G014640 vs. Swiss-Prot
Match: YC20L_SYNY3 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1509 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-08
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 1


Query: 53  RLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCV 112
           RL  I+ +  +    +FR+P RR     +S L GF+V   ++ + G     DV+ A   +
Sbjct: 5   RLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFIL 64

Query: 113 LLTEYVTRFYYSR--PKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           L  E V R++Y R          +LN FKMG +Y LF++AFKL S
Sbjct: 65  LFCELVNRWFYRRGVKMGDLQAEVLNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of CmoCh15G014640 vs. Swiss-Prot
Match: YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.3e-08
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 79  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPVALLNN 138
           G ISLL GF+++  +S   G  G   +IAA + V   E V++  YS + K    + LLNN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVRINLLNN 90

Query: 139 FKMGFTYGLFIDAFKLAS 156
            K+G TYGLF+DAFKL S
Sbjct: 91  LKIGITYGLFVDAFKLGS 108

[Close]

BLAST of CmoCh15G014640 vs. TrEMBL
Match: A0A0A0KPS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172820 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.5e-73
Identity = 143/156 (91.67%), Postives = 148/156 (94.87%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSP-RSLCIKAVQDTGGPRRLVDIIR 60
           MAQSASLV T LLNY FTP+ N SYWRYD++KSRPSP RS  +KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of CmoCh15G014640 vs. TrEMBL
Match: B9I4E7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13810g PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-58
Identity = 121/155 (78.06%), Postives = 130/155 (83.87%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MAQS SL++T  L   F PQ+  S  +Y     R S   L I+AVQ+  GPRRL+DIIR 
Sbjct: 1   MAQSVSLITTCPLKLGFAPQRRVSSVKYGTSVFRSSTGRLRIRAVQENEGPRRLIDIIRT 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           +PELSRNYFR PSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  IPELSRNYFRRPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of CmoCh15G014640 vs. TrEMBL
Match: W9S6A6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027545 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.4e-58
Identity = 117/155 (75.48%), Postives = 131/155 (84.52%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           M  +ASL S+GL  +   PQ   S  ++     + SP    ++AVQ+ GGPRRLVDIIR+
Sbjct: 1   MIHAASLSSSGLCTFGLRPQATGSSGKFGDFSIQSSPGRFRVRAVQENGGPRRLVDIIRV 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELSRNYF+SPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEYVT+
Sbjct: 61  VPELSRNYFQSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTK 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPK+TFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKITFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of CmoCh15G014640 vs. TrEMBL
Match: B9R9H7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497610 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.4e-58
Identity = 122/155 (78.71%), Postives = 130/155 (83.87%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MA S  L+ T  L   F  Q+  S  +Y ++ SR S   L I+AVQD GGP+RLVDIIR 
Sbjct: 1   MALSIGLIQTVPLKLGFGFQRRVSCGKYGMLISRSSRGLLSIQAVQDNGGPQRLVDIIRR 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEYVTR
Sbjct: 61  VPEFSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVICVLLTEYVTR 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of CmoCh15G014640 vs. TrEMBL
Match: D7TMY2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00310 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.4e-58
Identity = 118/155 (76.13%), Postives = 132/155 (85.16%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MA S SL ST LL +        S+ +  ++ SR SPR   ++AVQ+  GPRRLVDIIR+
Sbjct: 1   MAHSLSLPSTCLLKFGLATGTRVSHGKCSMLASRSSPRFFSVQAVQENEGPRRLVDIIRI 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VP+LSRNYF+SPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVL+TEYVTR
Sbjct: 61  VPQLSRNYFQSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLITEYVTR 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of CmoCh15G014640 vs. TAIR10
Match: AT5G43050.1 (AT5G43050.1 Protein of unknown function (DUF565))

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-52
Identity = 109/158 (68.99%), Postives = 124/158 (78.48%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPR-SLCIKAVQDTGGP--RRLVDI 60
           MA S S +ST L +      +  S+  +     +   R +  I+A+Q+T GP  RRL+DI
Sbjct: 1   MAHSLSFISTNLNSLVLNHHQCQSFGTFVSSPFKRKRRFARSIRALQETEGPTPRRLIDI 60

Query: 61  IRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEY 120
           IR VPE+SRNYF+ PSRR LFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEY
Sbjct: 61  IRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEY 120

Query: 121 VTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           VTRFYYSR  VTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 VTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

[Close]

BLAST of CmoCh15G014640 vs. NCBI nr
Match: gi|449451787|ref|XP_004143642.1| (PREDICTED: uncharacterized protein ycf20 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 5.0e-73
Identity = 143/156 (91.67%), Postives = 148/156 (94.87%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSP-RSLCIKAVQDTGGPRRLVDIIR 60
           MAQSASLV T LLNY FTP+ N SYWRYD++KSRPSP RS  +KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of CmoCh15G014640 vs. NCBI nr
Match: gi|659073084|ref|XP_008467245.1| (PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo])

HSP 1 Score: 278.5 bits (711), Expect = 7.2e-72
Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSP-RSLCIKAVQDTGGPRRLVDIIR 60
           MAQS SLV TGLLNY F+ + N+SYWRYD++KSRPSP RS  +KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of CmoCh15G014640 vs. NCBI nr
Match: gi|645261911|ref|XP_008236520.1| (PREDICTED: uncharacterized protein LOC103335287 [Prunus mume])

HSP 1 Score: 248.8 bits (634), Expect = 6.1e-63
Identity = 128/155 (82.58%), Postives = 137/155 (88.39%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MA S SLVSTGL  +  +PQ  AS+ +Y V   RPSP  L ++AVQ+TGG RRLVDIIR 
Sbjct: 1   MAHSLSLVSTGLHKFGLSPQNRASHRKYGVFTLRPSPGFLRVRAVQETGGSRRLVDIIRN 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA+VVCVLLTEYVT+
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIASVVCVLLTEYVTK 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of CmoCh15G014640 vs. NCBI nr
Match: gi|1009150185|ref|XP_015892884.1| (PREDICTED: ycf20-like protein isoform X1 [Ziziphus jujuba])

HSP 1 Score: 243.4 bits (620), Expect = 2.6e-61
Identity = 126/155 (81.29%), Postives = 134/155 (86.45%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MA + S+ STGLL +   PQ   S+ ++     R SPR L I+AVQ+ GGPRRLVDIIRL
Sbjct: 5   MAHAMSVPSTGLLEFGSNPQVRGSHLKFGDFVLRRSPRFLRIRAVQENGGPRRLVDIIRL 64

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 65  VPEFSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 124

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 125 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 159

[Close]

BLAST of CmoCh15G014640 vs. NCBI nr
Match: gi|470117345|ref|XP_004294819.1| (PREDICTED: uncharacterized protein ycf20 [Fragaria vesca subsp. vesca])

HSP 1 Score: 240.7 bits (613), Expect = 1.7e-60
Identity = 125/155 (80.65%), Postives = 132/155 (85.16%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MA S SL STGL  +   PQ   S  +Y V   R SP SL ++AVQ+TGG RRLVDIIR 
Sbjct: 1   MACSFSLPSTGLQTFGLNPQSRVSQAKYGVFTLRSSPGSLRVRAVQETGGSRRLVDIIRT 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELS NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT+
Sbjct: 61  VPELSSNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTK 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 155

The following BLAST results are available for this feature:

BLAST of CmoCh15G014640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF20_PYRYE	6.6e-09	41.24	Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1	[more]
YC20L_SYNY3	1.9e-08	35.24	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1509 PE...	[more]
YCF20_PORPU	7.3e-08	46.15	Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1	[more]

BLAST of CmoCh15G014640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPS1_CUCSA	3.5e-73	91.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172820 PE=4 SV=1	[more]
B9I4E7_POPTR	1.1e-58	78.06	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13810g PE=4 SV=1	[more]
W9S6A6_9ROSA	5.4e-58	75.48	Uncharacterized protein OS=Morus notabilis GN=L484_027545 PE=4 SV=1	[more]
B9R9H7_RICCO	5.4e-58	78.71	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497610 PE=4 SV=1	[more]
D7TMY2_VITVI	5.4e-58	76.13	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00310 PE=4 SV=...	[more]

BLAST of CmoCh15G014640 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43050.1	3.0e-52	68.99	Protein of unknown function (DUF565)	[more]

BLAST of CmoCh15G014640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451787\|ref\|XP_004143642.1\|	5.0e-73	91.67	PREDICTED: uncharacterized protein ycf20 [Cucumis sativus]	[more]
gi\|659073084\|ref\|XP_008467245.1\|	7.2e-72	90.38	PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo]	[more]
gi\|645261911\|ref\|XP_008236520.1\|	6.1e-63	82.58	PREDICTED: uncharacterized protein LOC103335287 [Prunus mume]	[more]
gi\|1009150185\|ref\|XP_015892884.1\|	2.6e-61	81.29	PREDICTED: ycf20-like protein isoform X1 [Ziziphus jujuba]	[more]
gi\|470117345\|ref\|XP_004294819.1\|	1.7e-60	80.65	PREDICTED: uncharacterized protein ycf20 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0008150	biological_process
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G014640.1	CmoCh15G014640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 101..155 score: 7.6
None	No IPR available	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 6..155 score: 1.6
None	No IPR available	PANTHER	PTHR33787:SF2	SUBFAMILY NOT NAMED	coord: 6..155 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G014640	Cucsa.115470	Cucumber (Gy14) v1	cgycmoB0277
CmoCh15G014640	CmaCh15G013970	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G014640	Cla002354	Watermelon (97103) v1	cmowmB264
CmoCh15G014640	Csa5G172820	Cucumber (Chinese Long) v2	cmocuB278
CmoCh15G014640	MELO3C005391	Melon (DHL92) v3.5.1	cmomeB244
CmoCh15G014640	ClCG01G005370	Watermelon (Charleston Gray)	cmowcgB244
CmoCh15G014640	CSPI05G08230	Wild cucumber (PI 183967)	cmocpiB287
CmoCh15G014640	Lsi09G005670	Bottle gourd (USVL1VR-Ls)	cmolsiB248
CmoCh15G014640	Cp4.1LG13g00550	Cucurbita pepo (Zucchini)	cmocpeB269
CmoCh15G014640	MELO3C005391.2	Melon (DHL92) v3.6.1	cmomedB277
CmoCh15G014640	CsaV3_5G005620	Cucumber (Chinese Long) v3	cmocucB0336
CmoCh15G014640	Cla97C01G005580	Watermelon (97103) v2	cmowmbB267
CmoCh15G014640	Bhi12G000645	Wax gourd	cmowgoB0365
CmoCh15G014640	CsGy5G005620	Cucumber (Gy14) v2	cgybcmoB573
CmoCh15G014640	Carg20783	Silver-seed gourd	carcmoB1004

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G014640	Cucurbita moschata (Rifu)	cmocmoB247
CmoCh15G014640	Cucurbita maxima (Rimu)	cmacmoB580
CmoCh15G014640	Watermelon (97103) v1	cmowmB270
CmoCh15G014640	Cucurbita pepo (Zucchini)	cmocpeB295
CmoCh15G014640	Silver-seed gourd	carcmoB0965