Cp4.1LG13g00550 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG13g00550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Protein of unknown function (DUF565)
Location	Cp4.1LG13 : 408508 .. 408975 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAATCTGCAAGTTTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATGTGATAAAATCACGGCCATCCCCTCGTAGTCTCTGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGGCTGGTGCCTGAGATCTCGAGAAATTACTTTCGAAGTCCTTCAAGGAGAGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

mRNA sequence

ATGGCACAATCTGCAAGTTTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATGTGATAAAATCACGGCCATCCCCTCGTAGTCTCTGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGGCTGGTGCCTGAGATCTCGAGAAATTACTTTCGAAGTCCTTCAAGGAGAGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Coding sequence (CDS)

ATGGCACAATCTGCAAGTTTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATGTGATAAAATCACGGCCATCCCCTCGTAGTCTCTGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGGCTGGTGCCTGAGATCTCGAGAAATTACTTTCGAAGTCCTTCAAGGAGAGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Protein sequence

MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

Homology

[Close]

BLAST of Cp4.1LG13g00550 vs. Swiss-Prot
Match: YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 79  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK-VTFPVALLNN 138
           G ISLL GF+++  +S   G  G   +IAA + V  TE  ++  YS  K +   + L NN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAATELTSKIVYSSHKQLNIKINLFNN 90

Query: 139 FKMGFTYGLFIDAFKLAS 156
           FK+G TYGLF+DAFKL S
Sbjct: 91  FKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Cp4.1LG13g00550 vs. Swiss-Prot
Match: YC20L_SYNY3 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1509 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-08
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 1


Query: 53  RLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCV 112
           RL  I+ +  +    +FR+P RR     +S L GF+V   ++ + G     DV+ A   +
Sbjct: 5   RLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFIL 64

Query: 113 LLTEYVTRFYYSR--PKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           L  E V R++Y R          +LN FKMG +Y LF++AFKL S
Sbjct: 65  LFCELVNRWFYRRGVKMGDLQAEVLNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of Cp4.1LG13g00550 vs. Swiss-Prot
Match: YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.3e-08
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 79  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPVALLNN 138
           G ISLL GF+++  +S   G  G   +IAA + V   E V++  YS + K    + LLNN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVRINLLNN 90

Query: 139 FKMGFTYGLFIDAFKLAS 156
            K+G TYGLF+DAFKL S
Sbjct: 91  LKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Cp4.1LG13g00550 vs. TrEMBL
Match: A0A0A0KPS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172820 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.9e-73
Identity = 142/156 (91.03%), Postives = 148/156 (94.87%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSP-RSLCIKAVQDTGGPRRLVDIIR 60
           MAQSASLV T LLNY FTP+ N SYWRYD++KSRPSP RS  +KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Cp4.1LG13g00550 vs. TrEMBL
Match: B9I4E7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13810g PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.8e-58
Identity = 120/155 (77.42%), Postives = 130/155 (83.87%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MAQS SL++T  L   F PQ+  S  +Y     R S   L I+AVQ+  GPRRL+DIIR 
Sbjct: 1   MAQSVSLITTCPLKLGFAPQRRVSSVKYGTSVFRSSTGRLRIRAVQENEGPRRLIDIIRT 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           +PE+SRNYFR PSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  IPELSRNYFRRPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cp4.1LG13g00550 vs. TrEMBL
Match: B9R9H7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497610 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.4e-58
Identity = 122/155 (78.71%), Postives = 130/155 (83.87%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MA S  L+ T  L   F  Q+  S  +Y ++ SR S   L I+AVQD GGP+RLVDIIR 
Sbjct: 1   MALSIGLIQTVPLKLGFGFQRRVSCGKYGMLISRSSRGLLSIQAVQDNGGPQRLVDIIRR 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEYVTR
Sbjct: 61  VPEFSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVICVLLTEYVTR 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cp4.1LG13g00550 vs. TrEMBL
Match: W9S6A6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027545 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.2e-58
Identity = 116/155 (74.84%), Postives = 131/155 (84.52%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           M  +ASL S+GL  +   PQ   S  ++     + SP    ++AVQ+ GGPRRLVDIIR+
Sbjct: 1   MIHAASLSSSGLCTFGLRPQATGSSGKFGDFSIQSSPGRFRVRAVQENGGPRRLVDIIRV 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYF+SPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEYVT+
Sbjct: 61  VPELSRNYFQSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTK 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPK+TFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKITFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cp4.1LG13g00550 vs. TrEMBL
Match: D7TMY2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00310 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.2e-58
Identity = 117/155 (75.48%), Postives = 132/155 (85.16%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MA S SL ST LL +        S+ +  ++ SR SPR   ++AVQ+  GPRRLVDIIR+
Sbjct: 1   MAHSLSLPSTCLLKFGLATGTRVSHGKCSMLASRSSPRFFSVQAVQENEGPRRLVDIIRI 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VP++SRNYF+SPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVL+TEYVTR
Sbjct: 61  VPQLSRNYFQSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLITEYVTR 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cp4.1LG13g00550 vs. TAIR10
Match: AT5G43050.1 (AT5G43050.1 Protein of unknown function (DUF565))

HSP 1 Score: 202.6 bits (514), Expect = 1.8e-52
Identity = 110/158 (69.62%), Postives = 124/158 (78.48%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPR-SLCIKAVQDTGGP--RRLVDI 60
           MA S S +ST L +      +  S+  +     +   R +  I+A+Q+T GP  RRL+DI
Sbjct: 1   MAHSLSFISTNLNSLVLNHHQCQSFGTFVSSPFKRKRRFARSIRALQETEGPTPRRLIDI 60

Query: 61  IRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEY 120
           IR VPEISRNYF+ PSRR LFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEY
Sbjct: 61  IRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEY 120

Query: 121 VTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           VTRFYYSR  VTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 VTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

[Close]

BLAST of Cp4.1LG13g00550 vs. NCBI nr
Match: gi|449451787|ref|XP_004143642.1| (PREDICTED: uncharacterized protein ycf20 [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 8.5e-73
Identity = 142/156 (91.03%), Postives = 148/156 (94.87%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSP-RSLCIKAVQDTGGPRRLVDIIR 60
           MAQSASLV T LLNY FTP+ N SYWRYD++KSRPSP RS  +KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Cp4.1LG13g00550 vs. NCBI nr
Match: gi|659073084|ref|XP_008467245.1| (PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo])

HSP 1 Score: 277.7 bits (709), Expect = 1.2e-71
Identity = 140/156 (89.74%), Postives = 148/156 (94.87%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSP-RSLCIKAVQDTGGPRRLVDIIR 60
           MAQS SLV TGLLNY F+ + N+SYWRYD++KSRPSP RS  +KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Cp4.1LG13g00550 vs. NCBI nr
Match: gi|645261911|ref|XP_008236520.1| (PREDICTED: uncharacterized protein LOC103335287 [Prunus mume])

HSP 1 Score: 248.1 bits (632), Expect = 1.0e-62
Identity = 127/155 (81.94%), Postives = 137/155 (88.39%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MA S SLVSTGL  +  +PQ  AS+ +Y V   RPSP  L ++AVQ+TGG RRLVDIIR 
Sbjct: 1   MAHSLSLVSTGLHKFGLSPQNRASHRKYGVFTLRPSPGFLRVRAVQETGGSRRLVDIIRN 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA+VVCVLLTEYVT+
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIASVVCVLLTEYVTK 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cp4.1LG13g00550 vs. NCBI nr
Match: gi|1009150185|ref|XP_015892884.1| (PREDICTED: ycf20-like protein isoform X1 [Ziziphus jujuba])

HSP 1 Score: 243.4 bits (620), Expect = 2.6e-61
Identity = 126/155 (81.29%), Postives = 134/155 (86.45%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MA + S+ STGLL +   PQ   S+ ++     R SPR L I+AVQ+ GGPRRLVDIIRL
Sbjct: 5   MAHAMSVPSTGLLEFGSNPQVRGSHLKFGDFVLRRSPRFLRIRAVQENGGPRRLVDIIRL 64

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 65  VPEFSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 124

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 125 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 159

[Close]

BLAST of Cp4.1LG13g00550 vs. NCBI nr
Match: gi|470117345|ref|XP_004294819.1| (PREDICTED: uncharacterized protein ycf20 [Fragaria vesca subsp. vesca])

HSP 1 Score: 240.0 bits (611), Expect = 2.8e-60
Identity = 124/155 (80.00%), Postives = 132/155 (85.16%), Query Frame = 1


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MA S SL STGL  +   PQ   S  +Y V   R SP SL ++AVQ+TGG RRLVDIIR 
Sbjct: 1   MACSFSLPSTGLQTFGLNPQSRVSQAKYGVFTLRSSPGSLRVRAVQETGGSRRLVDIIRT 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+S NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT+
Sbjct: 61  VPELSSNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTK 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 155

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g00550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF20_PYRYE	1.5e-08	46.15	Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1	[more]
YC20L_SYNY3	2.5e-08	35.24	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1509 PE...	[more]
YCF20_PORPU	7.3e-08	46.15	Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1	[more]

BLAST of Cp4.1LG13g00550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPS1_CUCSA	5.9e-73	91.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172820 PE=4 SV=1	[more]
B9I4E7_POPTR	1.8e-58	77.42	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13810g PE=4 SV=1	[more]
B9R9H7_RICCO	5.4e-58	78.71	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497610 PE=4 SV=1	[more]
W9S6A6_9ROSA	9.2e-58	74.84	Uncharacterized protein OS=Morus notabilis GN=L484_027545 PE=4 SV=1	[more]
D7TMY2_VITVI	9.2e-58	75.48	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00310 PE=4 SV=...	[more]

BLAST of Cp4.1LG13g00550 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43050.1	1.8e-52	69.62	Protein of unknown function (DUF565)	[more]

BLAST of Cp4.1LG13g00550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451787\|ref\|XP_004143642.1\|	8.5e-73	91.03	PREDICTED: uncharacterized protein ycf20 [Cucumis sativus]	[more]
gi\|659073084\|ref\|XP_008467245.1\|	1.2e-71	89.74	PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo]	[more]
gi\|645261911\|ref\|XP_008236520.1\|	1.0e-62	81.94	PREDICTED: uncharacterized protein LOC103335287 [Prunus mume]	[more]
gi\|1009150185\|ref\|XP_015892884.1\|	2.6e-61	81.29	PREDICTED: ycf20-like protein isoform X1 [Ziziphus jujuba]	[more]
gi\|470117345\|ref\|XP_004294819.1\|	2.8e-60	80.00	PREDICTED: uncharacterized protein ycf20 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g00550.1	Cp4.1LG13g00550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 101..155 score: 7.6
None	No IPR available	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 6..155 score: 2.4
None	No IPR available	PANTHER	PTHR33787:SF2	SUBFAMILY NOT NAMED	coord: 6..155 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG13g00550	Cucsa.115470	Cucumber (Gy14) v1	cgycpeB0271
Cp4.1LG13g00550	CmaCh15G013970	Cucurbita maxima (Rimu)	cmacpeB306
Cp4.1LG13g00550	CmoCh15G014640	Cucurbita moschata (Rifu)	cmocpeB269
Cp4.1LG13g00550	Cla002354	Watermelon (97103) v1	cpewmB189
Cp4.1LG13g00550	Csa5G172820	Cucumber (Chinese Long) v2	cpecuB186
Cp4.1LG13g00550	MELO3C005391	Melon (DHL92) v3.5.1	cpemeB147
Cp4.1LG13g00550	ClCG01G005370	Watermelon (Charleston Gray)	cpewcgB168
Cp4.1LG13g00550	CSPI05G08230	Wild cucumber (PI 183967)	cpecpiB187
Cp4.1LG13g00550	Lsi09G005670	Bottle gourd (USVL1VR-Ls)	cpelsiB133
Cp4.1LG13g00550	MELO3C005391.2	Melon (DHL92) v3.6.1	cpemedB174
Cp4.1LG13g00550	CsaV3_5G005620	Cucumber (Chinese Long) v3	cpecucB0224
Cp4.1LG13g00550	Bhi12G000645	Wax gourd	cpewgoB0233
Cp4.1LG13g00550	CsGy5G005620	Cucumber (Gy14) v2	cgybcpeB608

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG13g00550	Silver-seed gourd	carcpeB1040
Cp4.1LG13g00550	Silver-seed gourd	carcpeB0995
Cp4.1LG13g00550	Wax gourd	cpewgoB0224
Cp4.1LG13g00550	Cucurbita pepo (Zucchini)	cpecpeB222
Cp4.1LG13g00550	Cucurbita maxima (Rimu)	cmacpeB603
Cp4.1LG13g00550	Cucurbita moschata (Rifu)	cmocpeB552
Cp4.1LG13g00550	Watermelon (97103) v1	cpewmB186