Lsi09G005670 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G005670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ycf20
Location	chr09 : 6107800 .. 6108267 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACATTCTGCAAGTTTAGTCCATACTAGCCTCCTATATTATGGCTTTACTCCCAAAATGAATCCTTCATATTGGAGATATGATACGATTAAATCACGACCATCCCCTCGTAGTCTTCGTATCAAAGCTGTACAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCCCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTCACCGAGTATGTTACTCGATTTTATTACAGTCGACCGAAGGTAACTTTTCCCATTGCTCTACTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

mRNA sequence

ATGGCACATTCTGCAAGTTTAGTCCATACTAGCCTCCTATATTATGGCTTTACTCCCAAAATGAATCCTTCATATTGGAGATATGATACGATTAAATCACGACCATCCCCTCGTAGTCTTCGTATCAAAGCTGTACAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCCCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTCACCGAGTATGTTACTCGATTTTATTACAGTCGACCGAAGGTAACTTTTCCCATTGCTCTACTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Coding sequence (CDS)

ATGGCACATTCTGCAAGTTTAGTCCATACTAGCCTCCTATATTATGGCTTTACTCCCAAAATGAATCCTTCATATTGGAGATATGATACGATTAAATCACGACCATCCCCTCGTAGTCTTCGTATCAAAGCTGTACAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCCCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTCACCGAGTATGTTACTCGATTTTATTACAGTCGACCGAAGGTAACTTTTCCCATTGCTCTACTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Protein sequence

MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

Homology

[Close]

BLAST of Lsi09G005670 vs. Swiss-Prot
Match: YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.1e-09
Identity = 41/97 (42.27%), Postives = 55/97 (56.70%), Query Frame = 1


Query: 60  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 119
           L+  L+   + S S     G ISLL GF+++  +S   G  G   +IAA + V  TE  +
Sbjct: 13  LIKNLNNKLYYSLSELTT-GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAATELTS 72

Query: 120 RFYYSRPK-VTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           +  YS  K +   I L NNFK+G TYGLF+DAFKL S
Sbjct: 73  KIVYSSHKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Lsi09G005670 vs. Swiss-Prot
Match: YC20L_SYNY3 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1509 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-08
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 1


Query: 53  RLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCV 112
           RL  I+ +  +    +FR+P RR     +S L GF+V   ++ + G     DV+ A   +
Sbjct: 5   RLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFIL 64

Query: 113 LLTEYVTRFYYSR--PKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           L  E V R++Y R          +LN FKMG +Y LF++AFKL S
Sbjct: 65  LFCELVNRWFYRRGVKMGDLQAEVLNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of Lsi09G005670 vs. Swiss-Prot
Match: YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-08
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 79  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPIALLNN 138
           G ISLL GF+++  +S   G  G   +IAA + V   E V++  YS + K    I LLNN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVRINLLNN 90

Query: 139 FKMGFTYGLFIDAFKLAS 156
            K+G TYGLF+DAFKL S
Sbjct: 91  LKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Lsi09G005670 vs. TrEMBL
Match: A0A0A0KPS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172820 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.0e-76
Identity = 149/156 (95.51%), Postives = 151/156 (96.79%), Query Frame = 1


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSP-RSLRIKAVQDTGGPRRLVDIIR 60
           MA SASLVHTSLL YGFTPKMNPSYWRYD +KSRPSP RS R+KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Lsi09G005670 vs. TrEMBL
Match: B9I4E7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13810g PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-58
Identity = 123/155 (79.35%), Postives = 130/155 (83.87%), Query Frame = 1


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRL 60
           MA S SL+ T  L  GF P+   S  +Y T   R S   LRI+AVQ+  GPRRL+DIIR 
Sbjct: 1   MAQSVSLITTCPLKLGFAPQRRVSSVKYGTSVFRSSTGRLRIRAVQENEGPRRLIDIIRT 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           +PELSRNYFR PSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  IPELSRNYFRRPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Lsi09G005670 vs. TrEMBL
Match: D7TMY2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00310 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.4e-58
Identity = 119/155 (76.77%), Postives = 132/155 (85.16%), Query Frame = 1


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRL 60
           MAHS SL  T LL +G       S+ +   + SR SPR   ++AVQ+  GPRRLVDIIR+
Sbjct: 1   MAHSLSLPSTCLLKFGLATGTRVSHGKCSMLASRSSPRFFSVQAVQENEGPRRLVDIIRI 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VP+LSRNYF+SPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVL+TEYVTR
Sbjct: 61  VPQLSRNYFQSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLITEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Lsi09G005670 vs. TrEMBL
Match: W9S6A6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027545 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.1e-58
Identity = 116/155 (74.84%), Postives = 132/155 (85.16%), Query Frame = 1


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRL 60
           M H+ASL  + L  +G  P+   S  ++     + SP   R++AVQ+ GGPRRLVDIIR+
Sbjct: 1   MIHAASLSSSGLCTFGLRPQATGSSGKFGDFSIQSSPGRFRVRAVQENGGPRRLVDIIRV 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELSRNYF+SPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEYVT+
Sbjct: 61  VPELSRNYFQSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTK 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPK+TFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKITFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Lsi09G005670 vs. TrEMBL
Match: A0A067JQQ7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26166 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.9e-57
Identity = 117/155 (75.48%), Postives = 129/155 (83.23%), Query Frame = 1


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRL 60
           MA   SL+HT  L  G +P    S  +Y T   + + R   I+AVQ+  GPRRLVD+IR+
Sbjct: 1   MAQIVSLIHTGPLKLGPSPHRRISNGKYGTTVPKSARRQFSIQAVQEDRGPRRLVDLIRI 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           +PE SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEYVTR
Sbjct: 61  IPEFSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVICVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Lsi09G005670 vs. TAIR10
Match: AT5G43050.1 (AT5G43050.1 Protein of unknown function (DUF565))

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-52
Identity = 114/161 (70.81%), Postives = 124/161 (77.02%), Query Frame = 1


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLR----IKAVQDTGGP--RRL 60
           MAHS S + T+L           S+    T  S P  R  R    I+A+Q+T GP  RRL
Sbjct: 1   MAHSLSFISTNLNSLVLNHHQCQSF---GTFVSSPFKRKRRFARSIRALQETEGPTPRRL 60

Query: 61  VDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLL 120
           +DIIR VPE+SRNYF+ PSRR LFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLL
Sbjct: 61  IDIIRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLL 120

Query: 121 TEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           TEYVTRFYYSR  VTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 TEYVTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

[Close]

BLAST of Lsi09G005670 vs. NCBI nr
Match: gi|449451787|ref|XP_004143642.1| (PREDICTED: uncharacterized protein ycf20 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 2.8e-76
Identity = 149/156 (95.51%), Postives = 151/156 (96.79%), Query Frame = 1


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSP-RSLRIKAVQDTGGPRRLVDIIR 60
           MA SASLVHTSLL YGFTPKMNPSYWRYD +KSRPSP RS R+KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Lsi09G005670 vs. NCBI nr
Match: gi|659073084|ref|XP_008467245.1| (PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 8.5e-73
Identity = 144/156 (92.31%), Postives = 147/156 (94.23%), Query Frame = 1


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSP-RSLRIKAVQDTGGPRRLVDIIR 60
           MA S SLVHT LL YGF+ KMN SYWRYD +KSRPSP RS R+KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Lsi09G005670 vs. NCBI nr
Match: gi|645261911|ref|XP_008236520.1| (PREDICTED: uncharacterized protein LOC103335287 [Prunus mume])

HSP 1 Score: 245.0 bits (624), Expect = 8.8e-62
Identity = 125/155 (80.65%), Postives = 136/155 (87.74%), Query Frame = 1


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRL 60
           MAHS SLV T L  +G +P+   S+ +Y     RPSP  LR++AVQ+TGG RRLVDIIR 
Sbjct: 1   MAHSLSLVSTGLHKFGLSPQNRASHRKYGVFTLRPSPGFLRVRAVQETGGSRRLVDIIRN 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA+VVCVLLTEYVT+
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIASVVCVLLTEYVTK 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Lsi09G005670 vs. NCBI nr
Match: gi|1009150185|ref|XP_015892884.1| (PREDICTED: ycf20-like protein isoform X1 [Ziziphus jujuba])

HSP 1 Score: 245.0 bits (624), Expect = 8.8e-62
Identity = 125/155 (80.65%), Postives = 136/155 (87.74%), Query Frame = 1


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRL 60
           MAH+ S+  T LL +G  P++  S+ ++     R SPR LRI+AVQ+ GGPRRLVDIIRL
Sbjct: 5   MAHAMSVPSTGLLEFGSNPQVRGSHLKFGDFVLRRSPRFLRIRAVQENGGPRRLVDIIRL 64

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 65  VPEFSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 124

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 125 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 159

[Close]

BLAST of Lsi09G005670 vs. NCBI nr
Match: gi|470117345|ref|XP_004294819.1| (PREDICTED: uncharacterized protein ycf20 [Fragaria vesca subsp. vesca])

HSP 1 Score: 236.1 bits (601), Expect = 4.1e-59
Identity = 124/155 (80.00%), Postives = 131/155 (84.52%), Query Frame = 1


Query: 1   MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRL 60
           MA S SL  T L  +G  P+   S  +Y     R SP SLR++AVQ+TGG RRLVDIIR 
Sbjct: 1   MACSFSLPSTGLQTFGLNPQSRVSQAKYGVFTLRSSPGSLRVRAVQETGGSRRLVDIIRT 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELS NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT+
Sbjct: 61  VPELSSNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTK 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 155

The following BLAST results are available for this feature:

BLAST of Lsi09G005670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF20_PYRYE	5.1e-09	42.27	Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1	[more]
YC20L_SYNY3	2.5e-08	35.24	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1509 PE...	[more]
YCF20_PORPU	5.6e-08	47.44	Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1	[more]

BLAST of Lsi09G005670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPS1_CUCSA	2.0e-76	95.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172820 PE=4 SV=1	[more]
B9I4E7_POPTR	1.1e-58	79.35	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13810g PE=4 SV=1	[more]
D7TMY2_VITVI	2.4e-58	76.77	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0100g00310 PE=4 SV=...	[more]
W9S6A6_9ROSA	4.1e-58	74.84	Uncharacterized protein OS=Morus notabilis GN=L484_027545 PE=4 SV=1	[more]
A0A067JQQ7_JATCU	5.9e-57	75.48	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26166 PE=4 SV=1	[more]

BLAST of Lsi09G005670 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43050.1	1.4e-52	70.81	Protein of unknown function (DUF565)	[more]

BLAST of Lsi09G005670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451787\|ref\|XP_004143642.1\|	2.8e-76	95.51	PREDICTED: uncharacterized protein ycf20 [Cucumis sativus]	[more]
gi\|659073084\|ref\|XP_008467245.1\|	8.5e-73	92.31	PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo]	[more]
gi\|645261911\|ref\|XP_008236520.1\|	8.8e-62	80.65	PREDICTED: uncharacterized protein LOC103335287 [Prunus mume]	[more]
gi\|1009150185\|ref\|XP_015892884.1\|	8.8e-62	80.65	PREDICTED: ycf20-like protein isoform X1 [Ziziphus jujuba]	[more]
gi\|470117345\|ref\|XP_004294819.1\|	4.1e-59	80.00	PREDICTED: uncharacterized protein ycf20 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0008150	biological_process
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G005670.1	Lsi09G005670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 101..155 score: 7.9
None	No IPR available	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 6..155 score: 3.4
None	No IPR available	PANTHER	PTHR33787:SF2	SUBFAMILY NOT NAMED	coord: 6..155 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G005670	Csa5G172820	Cucumber (Chinese Long) v2	culsiB322
Lsi09G005670	CSPI05G08230	Wild cucumber (PI 183967)	cpilsiB322
Lsi09G005670	Cucsa.115470	Cucumber (Gy14) v1	cgylsiB162
Lsi09G005670	CmaCh15G013970	Cucurbita maxima (Rimu)	cmalsiB261
Lsi09G005670	CmoCh15G014640	Cucurbita moschata (Rifu)	cmolsiB248
Lsi09G005670	Cla002354	Watermelon (97103) v1	lsiwmB030
Lsi09G005670	MELO3C005391	Melon (DHL92) v3.5.1	lsimeB013
Lsi09G005670	ClCG01G005370	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G005670	MELO3C005391.2	Melon (DHL92) v3.6.1	lsimedB013
Lsi09G005670	Cla97C01G005580	Watermelon (97103) v2	lsiwmbB007
Lsi09G005670	Bhi12G000645	Wax gourd	lsiwgoB016
Lsi09G005670	Cp4.1LG13g00550	Cucurbita pepo (Zucchini)	cpelsiB133
Lsi09G005670	CsGy5G005620	Cucumber (Gy14) v2	cgyblsiB294
Lsi09G005670	Carg20783	Silver-seed gourd	carlsiB676
Lsi09G005670	CsaV3_5G005620	Cucumber (Chinese Long) v3	cuclsiB345

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G005670	Silver-seed gourd	carlsiB648
Lsi09G005670	Cucurbita maxima (Rimu)	cmalsiB531
Lsi09G005670	Cucurbita moschata (Rifu)	cmolsiB517
Lsi09G005670	Cucurbita pepo (Zucchini)	cpelsiB583