CsaV3_5G005620 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G005620
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	DUF565 domain-containing protein
Location	chr5 : 3688875 .. 3690272 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATTCTCTTTTGCTCGGTCAACCGGAAGTTTTCTCTTGCTCCTCACTCCCAAAGCGGAACCTGGGAACCGAATTCTAGGTATTCATTTTCCTTAAGTTTCTCCTATTTTTCTTTCATTTCTGTTATGGGTTCCTCAATTTTTCAATTCTAAGATGAATTTTATTCAGATTTAAACCTTTTTGTTATATTTATTCAGCTGAAGTTTAGTGGGAAGCTGGGTATTGTTTCTTGAAATTGAATATCTATGTGTTTGCTGCTTATTGTTATCATTGTTCATTGTCAAATTAGAACTCCAATTTTCTGTTTTTGCATTCAAAACCCCTTTCAGATTCCAGGCGTTGCTCGATTTATAATGATTATATGCCCCGTTTAATGATAATTAGCTTTGTGGGTAGTCTTGGGTCATTTTTTTTTCTCTTAACAACATTGCCAAATTTTAGCCTTTGTGTTCTATGTATTAGTGTCTCATCAGTTTAAGCAAAATGCTCTTTAATGATATCAGGTTCTCAACATTTTATCCAGTTGTATAGGAAGTGAAACCTTGAATGGCACAATCTGCAAGTTTAGTCCATACTAGCCTCTTAAATTATGGATTTACTCCTAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAGTCACGACCTTCCCCTCCTCGTAGCTTTCGTGTCAAAGCTGTGCAAGATACCGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCAAGGAGGGCTCTTTTTGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATCTCATTGTCATTTGGCGCTTTAGGAGTAAATGATGTTATAGCTGCTGTGGTATGCGTTCTCCTTACCGAGTATGTTACTCGATTTTATTACAGTCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAACAGCACGTGATGAAACCATTCTGGTGGTAGCTACAGCATTTACATTTGTAAAGTTCTTTGAGCAATAATTTTGGTTTTACTCTATATCTTTACAGCTTGTTCTAATTCTTTTATGAACTTTTTTCCCCTTCCCCTCTTTTTTCTTCTGTATATTTTCAACATACGGTTTACATTGAAGAATTAAATGTTCTATTCACCCTCAAATTGAATATAGTAACATATTTGAATGTAATTGATGGGTTTTAAGAGTTTAATGCATCCCTGACAGTGGAGAATTGTTTGATTGAACTGCTTCTTTCCACAAAACTGTTATGTGATAAATGTTGTACTTGTGCATATATATATATATTTGGTTTTCTATGGGAACTATAGAATTAAAAT

mRNA sequence

ATGGCACAATCTGCAAGTTTAGTCCATACTAGCCTCTTAAATTATGGATTTACTCCTAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAGTCACGACCTTCCCCTCCTCGTAGCTTTCGTGTCAAAGCTGTGCAAGATACCGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCAAGGAGGGCTCTTTTTGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATCTCATTGTCATTTGGCGCTTTAGGAGTAAATGATGTTATAGCTGCTGTGGTATGCGTTCTCCTTACCGAGTATGTTACTCGATTTTATTACAGTCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Coding sequence (CDS)

ATGGCACAATCTGCAAGTTTAGTCCATACTAGCCTCTTAAATTATGGATTTACTCCTAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAGTCACGACCTTCCCCTCCTCGTAGCTTTCGTGTCAAAGCTGTGCAAGATACCGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCAAGGAGGGCTCTTTTTGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATCTCATTGTCATTTGGCGCTTTAGGAGTAAATGATGTTATAGCTGCTGTGGTATGCGTTCTCCTTACCGAGTATGTTACTCGATTTTATTACAGTCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Protein sequence

MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

Homology

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BLAST of CsaV3_5G005620 vs. NCBI nr
Match: XP_004143642.1 (PREDICTED: uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein Csa_5G172820 [Cucumis sativus])

HSP 1 Score: 311.6 bits (797), Expect = 1.5e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
           MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 157
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of CsaV3_5G005620 vs. NCBI nr
Match: XP_008467245.1 (PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo])

HSP 1 Score: 300.1 bits (767), Expect = 4.5e-78
Identity = 151/156 (96.79%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
           MAQS SLVHT LLNYGF+ KMN SYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 157
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

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BLAST of CsaV3_5G005620 vs. NCBI nr
Match: XP_022969949.1 (uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized protein ycf20 [Cucurbita maxima])

HSP 1 Score: 282.7 bits (722), Expect = 7.5e-73
Identity = 143/156 (91.67%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
           MAQSASLV T LLNY FTP+ N SYWRYD++KSRPS PRS  +KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPS-PRSLGIKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 157
           RFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of CsaV3_5G005620 vs. NCBI nr
Match: XP_022928979.1 (uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacterized protein ycf20 [Cucurbita moschata])

HSP 1 Score: 282.3 bits (721), Expect = 9.8e-73
Identity = 143/156 (91.67%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
           MAQSASLV T LLNY FTP+ N SYWRYD++KSRPS PRS  +KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPS-PRSLCIKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 157
           RFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

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BLAST of CsaV3_5G005620 vs. NCBI nr
Match: XP_023549885.1 (uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886.1 uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281.6 bits (719), Expect = 1.7e-72
Identity = 142/156 (91.03%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
           MAQSASLV T LLNY FTP+ N SYWRYD++KSRPS PRS  +KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPS-PRSLCIKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 157
           RFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

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BLAST of CsaV3_5G005620 vs. TAIR10
Match: AT5G43050.1 (Protein of unknown function (DUF565))

HSP 1 Score: 199.1 bits (505), Expect = 2.0e-51
Identity = 111/160 (69.38%), Postives = 124/160 (77.50%), Query Frame = 0


Query: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSF--RVKAVQDTGG--PRRLV 60
           MA S S + T+L +         S+  +  V S     R F   ++A+Q+T G  PRRL+
Sbjct: 1   MAHSLSFISTNLNSLVLNHHQCQSFGTF--VSSPFKRKRRFARSIRALQETEGPTPRRLI 60

Query: 61  DIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLT 120
           DIIR VPE+SRNYF+ PSRR LFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLT
Sbjct: 61  DIIRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLT 120

Query: 121 EYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 157
           EYVTRFYYSR  VTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 EYVTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

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BLAST of CsaV3_5G005620 vs. TAIR10
Match: AT1G65420.1 (Protein of unknown function (DUF565))

HSP 1 Score: 44.3 bits (103), Expect = 8.1e-05
Identity = 28/80 (35.00%), Postives = 39/80 (48.75%), Query Frame = 0


Query: 84  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP-------KVTFPIALL 143
           LL GFY A  ++   G  G  DV+ A + V   E +    Y +P       K+   +  +
Sbjct: 118 LLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFM 177

Query: 144 NNFKMGFTYGLFIDAFKLAS 157
           N +K G   GLF+DAFKL S
Sbjct: 178 NFWKAGVCLGLFVDAFKLGS 197

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BLAST of CsaV3_5G005620 vs. Swiss-Prot
Match: sp|Q1XDS2|YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-09
Identity = 41/97 (42.27%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           L+  L+   + S S     G ISLL GF+++  +S   G  G   +IAA + V  TE  +
Sbjct: 13  LIKNLNNKLYYSLSELTT-GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAATELTS 72

Query: 121 RFYYSRPK-VTFPIALLNNFKMGFTYGLFIDAFKLAS 157
           +  YS  K +   I L NNFK+G TYGLF+DAFKL S
Sbjct: 73  KIVYSSHKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

[Close]

BLAST of CsaV3_5G005620 vs. Swiss-Prot
Match: sp|P72983|YC20L_SYNY3 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 54  RLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCV 113
           RL  I+ +  +    +FR+P RR     +S L GF+V   ++ + G     DV+ A   +
Sbjct: 5   RLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFIL 64

Query: 114 LLTEYVTRFYYSR--PKVTFPIALLNNFKMGFTYGLFIDAFKLAS 157
           L  E V R++Y R          +LN FKMG +Y LF++AFKL S
Sbjct: 65  LFCELVNRWFYRRGVKMGDLQAEVLNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of CsaV3_5G005620 vs. Swiss-Prot
Match: sp|P51214|YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-08
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 80  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPIALLNN 139
           G ISLL GF+++  +S   G  G   +IAA + V   E V++  YS + K    I LLNN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVRINLLNN 90

Query: 140 FKMGFTYGLFIDAFKLAS 157
            K+G TYGLF+DAFKL S
Sbjct: 91  LKIGITYGLFVDAFKLGS 108

[Close]

BLAST of CsaV3_5G005620 vs. Swiss-Prot
Match: sp|Q9MUL5|YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-04
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 84  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR----PKVTFPIALL--- 143
           LL GF++A  ++  FG  G  DV+ A + V + E +    YS+     K  F I+ L   
Sbjct: 35  LLLGFFIATVLATVFGQTGDWDVLVAGILVAMIEILGNKMYSKKYISKKQVFDISFLSLI 94

Query: 144 --NNFKMGFTYGLFIDAFKLAS 157
             N  K+G  +GLF+DAFKL S
Sbjct: 95  GINYIKIGLIFGLFVDAFKLGS 116

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BLAST of CsaV3_5G005620 vs. TrEMBL
Match: tr|A0A0A0KPS1|A0A0A0KPS1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.0e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
           MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 157
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of CsaV3_5G005620 vs. TrEMBL
Match: tr|A0A1S3CT33|A0A1S3CT33_CUCME (uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 3.0e-78
Identity = 151/156 (96.79%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
           MAQS SLVHT LLNYGF+ KMN SYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 157
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of CsaV3_5G005620 vs. TrEMBL
Match: tr|A0A1S3CUD8|A0A1S3CUD8_CUCME (uncharacterized protein LOC103504644 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.1e-61
Identity = 123/128 (96.09%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
           MAQS SLVHT LLNYGF+ KMN SYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPK 129
           RFYYSRPK
Sbjct: 121 RFYYSRPK 128

[Close]

BLAST of CsaV3_5G005620 vs. TrEMBL
Match: tr|A0A1S3CTA6|A0A1S3CTA6_CUCME (uncharacterized protein LOC103504644 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.1e-61
Identity = 123/128 (96.09%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
           MAQS SLVHT LLNYGF+ KMN SYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPK 129
           RFYYSRPK
Sbjct: 121 RFYYSRPK 128

[Close]

BLAST of CsaV3_5G005620 vs. TrEMBL
Match: tr|A0A251MZY5|A0A251MZY5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G123300 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.4e-59
Identity = 124/156 (79.49%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
           MA S SLV T L  +G +P+   S+ +Y +   RPS P   RV+AVQ+TGG RRLVDIIR
Sbjct: 1   MAHSLSLVSTGLHKFGLSPQNRVSHGKYGVFTLRPS-PGFLRVRAVQETGGSRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
            VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA+VVCVLLTEYVT
Sbjct: 61  NVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIASVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 157
           +FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 KFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

The following BLAST results are available for this feature:

BLAST of CsaV3_5G005620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143642.1	1.5e-81	100.00	PREDICTED: uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypotheti...	[more]
XP_008467245.1	4.5e-78	96.79	PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo]	[more]
XP_022969949.1	7.5e-73	91.67	uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized...	[more]
XP_022928979.1	9.8e-73	91.67	uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacteriz...	[more]
XP_023549885.1	1.7e-72	91.03	uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886....	[more]

BLAST of CsaV3_5G005620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43050.1	2.0e-51	69.38	Protein of unknown function (DUF565)	[more]
AT1G65420.1	8.1e-05	35.00	Protein of unknown function (DUF565)	[more]

BLAST of CsaV3_5G005620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q1XDS2\|YCF20_PYRYE	2.3e-09	42.27	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
sp\|P72983\|YC20L_SYNY3	1.2e-08	35.24	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
sp\|P51214\|YCF20_PORPU	3.4e-08	47.44	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
sp\|Q9MUL5\|YCF20_MESVI	1.7e-04	37.80	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]

BLAST of CsaV3_5G005620 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPS1\|A0A0A0KPS1_CUCSA	1.0e-81	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=4 SV=1	[more]
tr\|A0A1S3CT33\|A0A1S3CT33_CUCME	3.0e-78	96.79	uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644...	[more]
tr\|A0A1S3CUD8\|A0A1S3CUD8_CUCME	1.1e-61	96.09	uncharacterized protein LOC103504644 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CTA6\|A0A1S3CTA6_CUCME	1.1e-61	96.09	uncharacterized protein LOC103504644 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A251MZY5\|A0A251MZY5_PRUPE	1.4e-59	79.49	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G123300 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G005620.1	CsaV3_5G005620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 102..156 e-value: 8.2E-20 score: 71.0
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 1..156
None	No IPR available	PANTHER	PTHR33787:SF2	SUBFAMILY NOT NAMED	coord: 1..156

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G005620	CSPI05G08230	Wild cucumber (PI 183967)	cpicucB285
CsaV3_5G005620	Cucsa.115470	Cucumber (Gy14) v1	cgycucB153
CsaV3_5G005620	CmaCh15G013970	Cucurbita maxima (Rimu)	cmacucB0341
CsaV3_5G005620	CmoCh15G014640	Cucurbita moschata (Rifu)	cmocucB0336
CsaV3_5G005620	Cp4.1LG13g00550	Cucurbita pepo (Zucchini)	cpecucB0224
CsaV3_5G005620	CsGy5G005620	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G005620	Carg20783	Silver-seed gourd	carcucB0776
CsaV3_5G005620	Cla002354	Watermelon (97103) v1	cucwmB436
CsaV3_5G005620	MELO3C005391	Melon (DHL92) v3.5.1	cucmeB360
CsaV3_5G005620	ClCG01G005370	Watermelon (Charleston Gray)	cucwcgB385
CsaV3_5G005620	Lsi09G005670	Bottle gourd (USVL1VR-Ls)	cuclsiB345
CsaV3_5G005620	MELO3C005391.2	Melon (DHL92) v3.6.1	cucmedB352
CsaV3_5G005620	Cla97C01G005580	Watermelon (97103) v2	cucwmbB351
CsaV3_5G005620	Bhi12G000645	Wax gourd	cucwgoB454

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G005620	Cucumber (Chinese Long) v3	cuccucB122
CsaV3_5G005620	Silver-seed gourd	carcucB0752
CsaV3_5G005620	Cucumber (Gy14) v1	cgycucB395
CsaV3_5G005620	Cucurbita maxima (Rimu)	cmacucB0731
CsaV3_5G005620	Cucurbita moschata (Rifu)	cmocucB0719
CsaV3_5G005620	Cucurbita pepo (Zucchini)	cpecucB0916
CsaV3_5G005620	Bottle gourd (USVL1VR-Ls)	cuclsiB405
CsaV3_5G005620	Melon (DHL92) v3.5.1	cucmeB414
CsaV3_5G005620	Watermelon (97103) v1	cucwmB427