Cla97C01G005580 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G005580
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	ycf20-like protein
Location	Cla97Chr01 : 5380672 .. 5381139 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACATTCTGCAAGTTTAGTACATACTGGCCTCCTAAATTATGGGTTTACTCCCAAAATGAATCCTTCTTATTGGAGATATGATATGGTTAAATCACGACCATCCCCTCGTAGTGTTCGTATCAAAGCTGTGCAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCCGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCGCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAGTATGTTACTCGATTTTATTATAGTCGACCGAAAGTAACTTTCCCCATTGCTCTGTTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

mRNA sequence

ATGGCACATTCTGCAAGTTTAGTACATACTGGCCTCCTAAATTATGGGTTTACTCCCAAAATGAATCCTTCTTATTGGAGATATGATATGGTTAAATCACGACCATCCCCTCGTAGTGTTCGTATCAAAGCTGTGCAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCCGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCGCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAGTATGTTACTCGATTTTATTATAGTCGACCGAAAGTAACTTTCCCCATTGCTCTGTTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Coding sequence (CDS)

ATGGCACATTCTGCAAGTTTAGTACATACTGGCCTCCTAAATTATGGGTTTACTCCCAAAATGAATCCTTCTTATTGGAGATATGATATGGTTAAATCACGACCATCCCCTCGTAGTGTTCGTATCAAAGCTGTGCAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCCGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCGCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAGTATGTTACTCGATTTTATTATAGTCGACCGAAAGTAACTTTCCCCATTGCTCTGTTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Protein sequence

MAHSASLVHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

Homology

[Close]

BLAST of Cla97C01G005580 vs. NCBI nr
Match: XP_004143642.1 (PREDICTED: uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein Csa_5G172820 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 2.2e-77
Identity = 151/156 (96.79%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MAHSASLVHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIR 60
           MA SASLVHT LLNYGFTPKMNPSYWRYDMVKSRPS PRS R+KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Cla97C01G005580 vs. NCBI nr
Match: XP_008467245.1 (PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo])

HSP 1 Score: 290.0 bits (741), Expect = 4.6e-75
Identity = 148/156 (94.87%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MAHSASLVHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIR 60
           MA S SLVHTGLLNYGF+ KMN SYWRYDMVKSRPS PRS R+KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Cla97C01G005580 vs. NCBI nr
Match: XP_022969949.1 (uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized protein ycf20 [Cucurbita maxima])

HSP 1 Score: 288.1 bits (736), Expect = 1.8e-74
Identity = 144/155 (92.90%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MAHSASLVHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRL 60
           MA SASLV TGLLNY FTP+ N SYWRYD++KSRPSPRS+ IKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLGIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cla97C01G005580 vs. NCBI nr
Match: XP_022928979.1 (uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacterized protein ycf20 [Cucurbita moschata])

HSP 1 Score: 287.7 bits (735), Expect = 2.3e-74
Identity = 144/155 (92.90%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MAHSASLVHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRL 60
           MA SASLV TGLLNY FTP+ N SYWRYD++KSRPSPRS+ IKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cla97C01G005580 vs. NCBI nr
Match: XP_023549885.1 (uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886.1 uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.0 bits (733), Expect = 3.9e-74
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MAHSASLVHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRL 60
           MA SASLV TGLLNY FTP+ N SYWRYD++KSRPSPRS+ IKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cla97C01G005580 vs. TrEMBL
Match: tr|A0A0A0KPS1|A0A0A0KPS1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.5e-77
Identity = 151/156 (96.79%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MAHSASLVHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIR 60
           MA SASLVHT LLNYGFTPKMNPSYWRYDMVKSRPS PRS R+KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Cla97C01G005580 vs. TrEMBL
Match: tr|A0A1S3CT33|A0A1S3CT33_CUCME (uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 3.1e-75
Identity = 148/156 (94.87%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MAHSASLVHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVRIKAVQDTGGPRRLVDIIR 60
           MA S SLVHTGLLNYGF+ KMN SYWRYDMVKSRPS PRS R+KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Cla97C01G005580 vs. TrEMBL
Match: tr|A0A251MZY5|A0A251MZY5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G123300 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.7e-62
Identity = 125/155 (80.65%), Postives = 138/155 (89.03%), Query Frame = 0


Query: 1   MAHSASLVHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRL 60
           MAHS SLV TGL  +G +P+   S+ +Y +   RPSP  +R++AVQ+TGG RRLVDIIR 
Sbjct: 1   MAHSLSLVSTGLHKFGLSPQNRVSHGKYGVFTLRPSPGFLRVRAVQETGGSRRLVDIIRN 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA+VVCVLLTEYVT+
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIASVVCVLLTEYVTK 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cla97C01G005580 vs. TrEMBL
Match: tr|A0A2I4DTD2|A0A2I4DTD2_9ROSI (uncharacterized protein LOC108983282 OS=Juglans regia OX=51240 GN=LOC108983282 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.6e-60
Identity = 122/155 (78.71%), Postives = 135/155 (87.10%), Query Frame = 0


Query: 1   MAHSASLVHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRL 60
           MAHS+SL+ T LL  G +P+   S  +Y     R SP  +RI+AVQ+ GGPRRLVDIIRL
Sbjct: 1   MAHSSSLISTSLLTIGLSPQTRVSRGKYGTFPLRSSPGLLRIQAVQENGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYF+SPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEY T+
Sbjct: 61  VPEISRNYFQSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYATK 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYS+PKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSQPKVTFPLALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cla97C01G005580 vs. TrEMBL
Match: tr|A0A2N9FJH7|A0A2N9FJH7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18848 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 4.8e-60
Identity = 121/155 (78.06%), Postives = 134/155 (86.45%), Query Frame = 0


Query: 1   MAHSASLVHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVRIKAVQDTGGPRRLVDIIRL 60
           M HS SLV T L+ +G +P+   S  +Y +   R SPR +RI+AVQ+ GGP+RLVDII+ 
Sbjct: 1   MVHSMSLVSTCLVKFGSSPQTRVSCGKYGIFNLRSSPRLLRIRAVQENGGPQRLVDIIKA 60

Query: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEY T+
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYATK 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ LLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPLGLLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cla97C01G005580 vs. Swiss-Prot
Match: sp|Q1XDS2|YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.9e-09
Identity = 41/97 (42.27%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 60  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 119
           L+  L+   + S S     G ISLL GF+++  +S   G  G   +IAA + V  TE  +
Sbjct: 13  LIKNLNNKLYYSLSELTT-GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAATELTS 72

Query: 120 RFYYSRPK-VTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           +  YS  K +   I L NNFK+G TYGLF+DAFKL S
Sbjct: 73  KIVYSSHKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Cla97C01G005580 vs. Swiss-Prot
Match: sp|P72983|YC20L_SYNY3 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 53  RLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCV 112
           RL  I+ +  +    +FR+P RR     +S L GF+V   ++ + G     DV+ A   +
Sbjct: 5   RLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFIL 64

Query: 113 LLTEYVTRFYYSR--PKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           L  E V R++Y R          +LN FKMG +Y LF++AFKL S
Sbjct: 65  LFCELVNRWFYRRGVKMGDLQAEVLNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of Cla97C01G005580 vs. Swiss-Prot
Match: sp|P51214|YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-08
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 79  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPIALLNN 138
           G ISLL GF+++  +S   G  G   +IAA + V   E V++  YS + K    I LLNN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVRINLLNN 90

Query: 139 FKMGFTYGLFIDAFKLAS 156
            K+G TYGLF+DAFKL S
Sbjct: 91  LKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Cla97C01G005580 vs. Swiss-Prot
Match: sp|Q9MUL5|YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.9e-04
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 83  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR----PKVTFPIALL--- 142
           LL GF++A  ++  FG  G  DV+ A + V + E +    YS+     K  F I+ L   
Sbjct: 35  LLLGFFIATVLATVFGQTGDWDVLVAGILVAMIEILGNKMYSKKYISKKQVFDISFLSLI 94

Query: 143 --NNFKMGFTYGLFIDAFKLAS 156
             N  K+G  +GLF+DAFKL S
Sbjct: 95  GINYIKIGLIFGLFVDAFKLGS 116

[Close]

BLAST of Cla97C01G005580 vs. TAIR10
Match: AT5G43050.1 (Protein of unknown function (DUF565))

HSP 1 Score: 203.4 bits (516), Expect = 1.0e-52
Identity = 111/158 (70.25%), Postives = 123/158 (77.85%), Query Frame = 0


Query: 1   MAHSASLVHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVR-IKAVQDTGG--PRRLVDI 60
           MAHS S + T L +         S+  +     +   R  R I+A+Q+T G  PRRL+DI
Sbjct: 1   MAHSLSFISTNLNSLVLNHHQCQSFGTFVSSPFKRKRRFARSIRALQETEGPTPRRLIDI 60

Query: 61  IRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEY 120
           IR VPE+SRNYF+ PSRR LFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEY
Sbjct: 61  IRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEY 120

Query: 121 VTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           VTRFYYSR  VTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 VTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

[Close]

BLAST of Cla97C01G005580 vs. TAIR10
Match: AT1G65420.1 (Protein of unknown function (DUF565))

HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04
Identity = 28/80 (35.00%), Postives = 39/80 (48.75%), Query Frame = 0


Query: 83  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP-------KVTFPIALL 142
           LL GFY A  ++   G  G  DV+ A + V   E +    Y +P       K+   +  +
Sbjct: 118 LLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFM 177

Query: 143 NNFKMGFTYGLFIDAFKLAS 156
           N +K G   GLF+DAFKL S
Sbjct: 178 NFWKAGVCLGLFVDAFKLGS 197

The following BLAST results are available for this feature:

BLAST of Cla97C01G005580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143642.1	2.2e-77	96.79	PREDICTED: uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypotheti...	[more]
XP_008467245.1	4.6e-75	94.87	PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo]	[more]
XP_022969949.1	1.8e-74	92.90	uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized...	[more]
XP_022928979.1	2.3e-74	92.90	uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacteriz...	[more]
XP_023549885.1	3.9e-74	92.26	uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886....	[more]

BLAST of Cla97C01G005580 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPS1\|A0A0A0KPS1_CUCSA	1.5e-77	96.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=4 SV=1	[more]
tr\|A0A1S3CT33\|A0A1S3CT33_CUCME	3.1e-75	94.87	uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644...	[more]
tr\|A0A251MZY5\|A0A251MZY5_PRUPE	1.7e-62	80.65	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G123300 PE=4 SV=1	[more]
tr\|A0A2I4DTD2\|A0A2I4DTD2_9ROSI	1.6e-60	78.71	uncharacterized protein LOC108983282 OS=Juglans regia OX=51240 GN=LOC108983282 P...	[more]
tr\|A0A2N9FJH7\|A0A2N9FJH7_FAGSY	4.8e-60	78.06	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18848 PE=4 SV=1	[more]

BLAST of Cla97C01G005580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q1XDS2\|YCF20_PYRYE	3.9e-09	42.27	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
sp\|P72983\|YC20L_SYNY3	2.6e-08	35.24	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
sp\|P51214\|YCF20_PORPU	5.7e-08	47.44	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
sp\|Q9MUL5\|YCF20_MESVI	2.9e-04	37.80	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]

BLAST of Cla97C01G005580 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43050.1	1.0e-52	70.25	Protein of unknown function (DUF565)	[more]
AT1G65420.1	1.4e-04	35.00	Protein of unknown function (DUF565)	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0008150	biological_process
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G005580.1	Cla97C01G005580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 101..155 e-value: 8.1E-20 score: 71.0
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 1..155
None	No IPR available	PANTHER	PTHR33787:SF2	SUBFAMILY NOT NAMED	coord: 1..155

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G005580	Cla002354	Watermelon (97103) v1	wmwmbB238
Cla97C01G005580	Csa5G172820	Cucumber (Chinese Long) v2	cuwmbB336
Cla97C01G005580	MELO3C005391	Melon (DHL92) v3.5.1	mewmbB009
Cla97C01G005580	ClCG01G005370	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G005580	CSPI05G08230	Wild cucumber (PI 183967)	cpiwmbB349
Cla97C01G005580	Cucsa.115470	Cucumber (Gy14) v1	cgywmbB166
Cla97C01G005580	CmaCh15G013970	Cucurbita maxima (Rimu)	cmawmbB285
Cla97C01G005580	CmoCh15G014640	Cucurbita moschata (Rifu)	cmowmbB267
Cla97C01G005580	Lsi09G005670	Bottle gourd (USVL1VR-Ls)	lsiwmbB007
Cla97C01G005580	CsGy5G005620	Cucumber (Gy14) v2	cgybwmbB319
Cla97C01G005580	MELO3C005391.2	Melon (DHL92) v3.6.1	medwmbB007
Cla97C01G005580	Carg20783	Silver-seed gourd	carwmbB0774
Cla97C01G005580	CsaV3_5G005620	Cucumber (Chinese Long) v3	cucwmbB351
Cla97C01G005580	Bhi12G000645	Wax gourd	wgowmbB060

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G005580	Silver-seed gourd	carwmbB0741
Cla97C01G005580	Cucurbita maxima (Rimu)	cmawmbB601
Cla97C01G005580	Cucurbita moschata (Rifu)	cmowmbB576
Cla97C01G005580	Wax gourd	wgowmbB064