Carg20783 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20783
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
Location	Cucurbita_argyrosperma_scaffold_134 : 342004 .. 347295 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGGTGGTGCGGGGGATTCTGAAGTCGATCAAAGACAAAGGCATCGGTACTTTCTTGAGAGACCTCAAGGAAGAAGGCTACTTGTAATGTTTTCCTTTCCTATTTTTCGTTTTTGATCCATGGTTTCTGTCAAGTCCTTGGGGAATTTGGTGGTGTCGTCGAATTCGAATTGGAATTCGCGCCTTTTAGTTATTTTTTGCTTAATTTGTGTGATGTATTGGTGTTTCTCTTATTGTTCTGAAGATCGCTGTTTCAATGTTTAATCACTACGGGTGTTTCTTCCCCAATTTGAATGTTCGATGCCTATGGATATTGTCTCTGTTTCCCCAGCAATGTTGGAATTTGGATTGTGTTAACTGTTCTTTCTTGATTGAATCTTGCAGGAAATGCTTACCCGATGGAAACTTATTGTAAGTTCAATTTTCTATACAGTATAGAGCTTTCCTATAAAATGATTAAACTATCACCCCCTATAAGAGAACATAAAAATCATCGTTGCCTTCCTTTACATATTGTTTGTGCTTCCATGGAGGTCTGCAGTATCCTTGGTTTCGCAATGGAGAATCATGGGTTGTGCGTACTTCTCCACCAATGCTTGTCCACAGGCAACTGGATCTTCCCAACCATAATTTCTATTGAGAATTGTTGGGAGGGGAGTCCCACATCGGCTAATTAAGGGTTAATCATGGGTTTATAAGTAAGGAATACATCTCCATTGGGATGAGGCCTTTTGGAGAAACCAAAAGTCAAGCCATGATAGCTTAGGCTTAAAGTGGACAATATCATATCATTGTAGAGATATGTGATTCCTAACATAAATAACACCTTCAAGGGTTATAAAACACAAGAATTCAGTGATGGATAGCTATCTCAGGGTCCGTCCGCCATGCTTGATAGCTCATGGTAGTATCATCTGAATCCATGACGGCCCTCCATCTTTAGGACAGAAAATATTTTAGTGCATTTGAAAGACTGCTTGGAAGAGCATCAATCTTCATTTAGGACAGAAGAGGAGCTTTTCCGCTCACTGAATTATGTTGGATTTCTTTTCAATAATTAGGTCCTAGAAGCCCCTACATCTTGGGTTTCAACTATTTTAAAGGTCAAGTTGATGCCTTACAACTCCATTTTCTCTGTCAATAGTATCAGTTCAATAGAAATTTCTGTACTAGCTGTTTGACACTTAACTGAATTAACCGAGAAGATAGAGGCACATTAAAAGATTATGATGATATTCCACGAATCAACCAATTTAACTTTGTCACAAACATGCTATATATGAGTATTATATGTGACGTTGAGGTGGTAAACTTGAAAATTGTTCCTACTCTTCCTCTCTTTCGTTCAGGTTTAGAGGTGTTATGACTCTCCTTTCTTTATTGGGAGATCCCGAGCTTAGACGAGGGAGAAGGGATTTTTATACTTGGTGTCCTAGCCTTTCTATGGGCTTTTCTTGTAGATCTTTCTTTCACTACTTAGTGGATCCATCCCCTTCTAAGGAATCTATTTTCTCAATTCTTTGGAGTGTGAAAGTTCTAAAAAAAGGTGAAGTTCTTTGTTTGGGTGGTTAATCATAGAAGAATCAATAACTTGGATAGCCTCTCAAGGAAGTTTCCTCCTTTGGTAGGGTTATTCTGTTACATCATTTGTCGGAGGGCGGAGGAAGATCTGAACCATTTTGTTCGGAGTTGTAACTATGCTCGTTCGGTTTGTAATTACTTCTTTGGAGTGTTCGTGTGATATCCCACATTGGTTGGGAAGGAGAATGAAACACCCTTTATAAGCGTGTGGAATCTTTTCCCTAGCAGACGCATTTTAAAGCTCTAAAAAGGAAAGCCCAAAGAAGACAATATCTGCTAGCGGTAGGCTTGGGCCGTTACAGTTTGGCCTTTAGATAGCCCAATACAGAGCTTTTTGTGATACGATCGAGGAATTCCTCCTCCATCCTTCGTTTAGGGGAAAAGAGAGTTACAGGGAAAGTTGGGATGCATGAAAGTTAGTCTTTTATAGAGAAATATATATCTATGTAGCTGTTATTTTGCTTTCCAATTGACGTCAACAATTTTTTTTTATCTCATTCATACACTGAATAATTTCCTTTCCTTGCAAACTATTCATGTGGTTTATGGGAGCTATCTTTATCATCTCTAATTTTGTTTTATTCAGGCAAACCAAAATTCACAACATCGGTGCGACACTTGTGGGTGTCGATAAGTTTGGAAATAAATATTACCAGAAGCTCGATGAACAAACTCAATATGGTATTTTTCTTTCTATTTGCTATCGGTGAAGGCCAAGATGTCTAAACCATTGCTTAAGACACTTGCCATGTTATGTTAACTCGAACCGATTGATTATGTTTCTTGCTGCAGAGTGATGCAGTAGTTGTACGTCGCCTTGTATTACTTATTCTTCTAGTTTTTCTGTTGAAAACTGTTCATCTTCCTGCTAATGATATTCCTCTAATTGCGATACGAAACTCGACAAAATTTTGCAAGAACAAATTTACCCTCGAAAGTAAATGCAAGAAAAGGAATTTTTACATATAGGACGACCCATTTTATATCTTGAACATCTATTTTGCGCTTACGCTTGTTCCATGTTAACGAAAGAGTTCATGAACATTTTTTGAACTCGAAGTGTTGTCTAACCTTCTCTTTTTATGTTTTGTGAAAATCTGAGCTAGTGAATTTGATATCTCTGTAGGAAGACACAGGTGGGTTGAATATGCAGAGAAGGGTCGTTATAATGCTTCTCAGGTGCCGCCCGAATGGCATGGCTGGCTCCACTACATAACCGATCACACAGGAGACGAGGTAACTCTCCTTGTTAAGGATATTTAGTATTAAATTATAGTTTACCATATATATCATATTTGATGTATTATTATAAGGTAAATATCTATCTTCCTTACTATACGTATCTTTCCATACATTGTTCTTTCGATTTATTACTATTTCTATATCCTTGTAATTTATTTGATTATAAATAGAGAAGCTTCACGCACCATTTAGGTGTGGTGAATTAAGCAAACATTCTGACTCCTTCTCTAGCATTTCTGTGAGTTTCAAAACACATCGAAGTTCGAGGACTAAATGTGTAATATTAAAAGTTTAAGGACCAAATAGACATAAACTTGAAAGCTCAAAGATTTATCGTTTTGCAGCTTCTGATGCTGAAACCGAGTAGGTATGGGATAGAACACAAGGAAAACTTCTCTGGGGAAGGTGAAGAACTAATCTACCATTCCAAGGGACATGCTCTTAATCCTGGGCAGAGAGATTGGACACGCTATCAGTCATGGCAACCAACCAAGTCCTAAGTAATTTGTGTATCAATTCCTTAGTTCAATTTGGAAATCCTTGGGATATCTGGTTGTGTTCTTTCCTGTTCTTCTGAATAAGCGACTTGTTGTTGTCTCTGCAAGCTGTGAATTATTTTTCATCATGTTTACTGCAAACACATGAGGGATTTTCTGCTTGTTTCTGTTCTTTTGTGCCACGTCTTAGCGACCACTGTGATAGAACGTTATATCGTGGCAGTGTATTGATGTTATCAGCTTTGGGCATTCCTAAAATGAAAGTTATTGTCTCGAAATGTTTGAAGTTCATACTCAAATTTGTACAATTTACTTGAAAAAATAATCAATGATCGATAACAAGGAGTAACTTTTTCCTATCTTCTAGATTTGAAATCCTCTAAATCTAATTGATCTAACTAGATCGAAAGTTCTAAAGCACAAAGCTTGACAAAGATCGGACTTGTTAATTTCATATCATTAATGAATGTCATTTTACCATGTAGACCTCCAACGAGATGATGATCCACTTTTCGTAGATTATTAATGTTCTTATATCAACTTTTGGCTTGTTGATCGGCTTAAATCGATTTTCAACTCGTTGATCTTGATTGGTTGGAATAATCTCTACCAAGTTTGATCCAACCGTCATAAAAATTTATTTTTTAAAAATTGGTCAAAATTTTGTAAACCCAAAAATATTTTGGGTCATAAAAGCAATTTCACGCATGCACTCTTACATTTTCTAATCACAATTTCCAAATTCGTGATTCTCTTTGCTCCGTCGATAGGGGAGCAGTTCTCCTGTTCTTCACTCCCAGAGCGGAACTTGGAATCGAATTGTAGGTATTTATTTTCCCTTAATTTTCTCCCATTTTCCTTTCATTTCTGTTCAGCGCTCTTCAATTTTTCAATCCTACCACGACGGAAGTTTTTTCGTCCTAATTTTGCGTAATTGCTCACTGTTTGGCTTCCCAGAAAATCGAGAAGAAGAATTCGTTCAAATGAACTTAAAATTTCTCCCAATTTCTCACCACTGCTGTTTTGTTTCATTCATTTCTATGAATGAGGTTAAGATTTTAGCCTTTGTTATCCTTGCTCTAGGTGTTTACAGTGCAATACATGGCTCTGTGGATTATTAATTTTCTATCATTTTATTCAGAGATTTGAATTTGAAATTGAAATACACACATGAATCTACGTGTTTGCTGCTTATTGTTGTTATTGTTCAACATCAATTGAGAATTCGAAATCCTCTGTTTTTGTATTGAAATCCCCCATCAGATTATAGCCATTGCTCGATTTATACTGATTAAAACAGCTTCCTCGCACCATTTAATGATAATCATGGCGCTGTGGGAGTTCTTGAGTCAAATTTTCACAACATTTCCGAATTTCAGTTTTTGTGTTCTTTGCAAAAACATTCTCATTTGATTAATCTTCCGTTTCTCAAGCAAAATATTCTTCATTGATCTCAGATTCTCAACATTTTATTCAGAATATAGGCAGTGGTACATTGAATGGCACAATCTGCAAGTTTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATATGATAAAATCACGACCATCCCCTCGTAGTCTTTGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGATTGGTGCCTGAGATCTCGAGAAATTACTTTCGAAGTCCTTCAAGAAGGGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

mRNA sequence

ATGGCTTCGGTGGTGCGGGGGATTCTGAAGTCGATCAAAGACAAAGGCATCGGTACTTTCTTGAGAGACCTCAAGGAAGAAGGCTACTTGAAATGCTTACCCGATGGAAACTTATTGCAAACCAAAATTCACAACATCGGTGCGACACTTGTGGGTGTCGATAAGTTTGGAAATAAATATTACCAGAAGCTCGATGAACAAACTCAATATGGAAGACACAGGTGGGTTGAATATGCAGAGAAGGGTCGTTATAATGCTTCTCAGGGGAGCAGTTCTCCTGTTCTTCACTCCCAGAGCGGAACTTGGAATCGAATTGTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATATGATAAAATCACGACCATCCCCTCGTAGTCTTTGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGATTGGTGCCTGAGATCTCGAGAAATTACTTTCGAAGTCCTTCAAGAAGGGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Coding sequence (CDS)

ATGGCTTCGGTGGTGCGGGGGATTCTGAAGTCGATCAAAGACAAAGGCATCGGTACTTTCTTGAGAGACCTCAAGGAAGAAGGCTACTTGAAATGCTTACCCGATGGAAACTTATTGCAAACCAAAATTCACAACATCGGTGCGACACTTGTGGGTGTCGATAAGTTTGGAAATAAATATTACCAGAAGCTCGATGAACAAACTCAATATGGAAGACACAGGTGGGTTGAATATGCAGAGAAGGGTCGTTATAATGCTTCTCAGGGGAGCAGTTCTCCTGTTCTTCACTCCCAGAGCGGAACTTGGAATCGAATTGTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATATGATAAAATCACGACCATCCCCTCGTAGTCTTTGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGATTGGTGCCTGAGATCTCGAGAAATTACTTTCGAAGTCCTTCAAGAAGGGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Protein sequence

MASVVRGILKSIKDKGIGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQGSSSPVLHSQSGTWNRIVVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

Homology

[Close]

BLAST of Carg20783 vs. NCBI nr
Match: XP_023549885.1 (uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886.1 uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.8 bits (756), Expect = 1.4e-76
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 106 VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISR 165
           +VSTGLLNYAFTPQKNASYWRYD+IKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISR
Sbjct: 7   LVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISR 66

Query: 166 NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 225
           NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP
Sbjct: 67  NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 126

Query: 226 KVTFPVALLNNFKMGFTYGLFIDAFKLAS 255
           KVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 127 KVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Carg20783 vs. NCBI nr
Match: XP_022928979.1 (uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacterized protein ycf20 [Cucurbita moschata])

HSP 1 Score: 295.0 bits (754), Expect = 2.4e-76
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 106 VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISR 165
           +VSTGLLNYAFTPQKNASYWRYD+IKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPE+SR
Sbjct: 7   LVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPELSR 66

Query: 166 NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 225
           NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP
Sbjct: 67  NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 126

Query: 226 KVTFPVALLNNFKMGFTYGLFIDAFKLAS 255
           KVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 127 KVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Carg20783 vs. NCBI nr
Match: XP_022969949.1 (uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized protein ycf20 [Cucurbita maxima])

HSP 1 Score: 290.4 bits (742), Expect = 5.8e-75
Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 106 VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISR 165
           +VSTGLLNYAFTPQKNASYWRYD+IKSRPSPRSL IKAVQDTGGPRRLVDIIRLVPE+SR
Sbjct: 7   LVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLGIKAVQDTGGPRRLVDIIRLVPELSR 66

Query: 166 NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 225
           NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP
Sbjct: 67  NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 126

Query: 226 KVTFPVALLNNFKMGFTYGLFIDAFKLAS 255
           KVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 127 KVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Carg20783 vs. NCBI nr
Match: XP_004143642.1 (PREDICTED: uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein Csa_5G172820 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 9.6e-70
Identity = 136/150 (90.67%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 106 VVSTGLLNYAFTPQKNASYWRYDMIKSRPS-PRSLCIKAVQDTGGPRRLVDIIRLVPEIS 165
           +V T LLNY FTP+ N SYWRYDM+KSRPS PRS  +KAVQDTGGPRRLVDIIRLVPE+S
Sbjct: 7   LVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELS 66

Query: 166 RNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR 225
           RNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR
Sbjct: 67  RNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR 126

Query: 226 PKVTFPVALLNNFKMGFTYGLFIDAFKLAS 255
           PKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 127 PKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Carg20783 vs. NCBI nr
Match: XP_008467245.1 (PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 4.8e-69
Identity = 135/150 (90.00%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 106 VVSTGLLNYAFTPQKNASYWRYDMIKSRPS-PRSLCIKAVQDTGGPRRLVDIIRLVPEIS 165
           +V TGLLNY F+ + N+SYWRYDM+KSRPS PRS  +KAVQDTGGPRRLVDIIRLVPE+S
Sbjct: 7   LVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELS 66

Query: 166 RNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR 225
           RNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR
Sbjct: 67  RNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR 126

Query: 226 PKVTFPVALLNNFKMGFTYGLFIDAFKLAS 255
           PKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 127 PKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Carg20783 vs. TAIR10
Match: AT5G43050.1 (Protein of unknown function (DUF565))

HSP 1 Score: 198.7 bits (504), Expect = 4.2e-51
Identity = 101/116 (87.07%), Postives = 108/116 (93.10%), Query Frame = 0


Query: 141 IKAVQDTGG--PRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGA 200
           I+A+Q+T G  PRRL+DIIR VPEISRNYF+ PSRR LFGGISLLGGFYVAQTISLSFGA
Sbjct: 43  IRALQETEGPTPRRLIDIIRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGA 102

Query: 201 LGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 255
           LGVNDVIAAV+CVLLTEYVTRFYYSR  VTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 103 LGVNDVIAAVLCVLLTEYVTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

[Close]

BLAST of Carg20783 vs. TAIR10
Match: AT3G03100.1 (NADH:ubiquinone oxidoreductase, 17.2kDa subunit)

HSP 1 Score: 139.0 bits (349), Expect = 3.9e-33
Identity = 63/86 (73.26%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 3  SVVRGILKSIKDKGIGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 62
          +V +  L++I++KG+G F+R ++EEG+++CLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ
Sbjct: 4  TVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 63

Query: 63 KLDEQTQYGRHRWVEYAEKGRYNASQ 89
          KL + TQYGRHRWVEYA K RYNASQ
Sbjct: 64 KLGD-TQYGRHRWVEYASKDRYNASQ 88

[Close]

BLAST of Carg20783 vs. TAIR10
Match: AT1G65420.1 (Protein of unknown function (DUF565))

HSP 1 Score: 43.9 bits (102), Expect = 1.7e-04
Identity = 29/80 (36.25%), Postives = 39/80 (48.75%), Query Frame = 0


Query: 182 LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP-------KVTFPVALL 241
           LL GFY A  ++   G  G  DV+ A + V   E +    Y +P       K+   V  +
Sbjct: 118 LLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFM 177

Query: 242 NNFKMGFTYGLFIDAFKLAS 255
           N +K G   GLF+DAFKL S
Sbjct: 178 NFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of Carg20783 vs. Swiss-Prot
Match: sp|Q9M9M9|NDUAC_ARATH (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana OX=3702 GN=At3g03100 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.1e-32
Identity = 63/86 (73.26%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 3  SVVRGILKSIKDKGIGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 62
          +V +  L++I++KG+G F+R ++EEG+++CLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ
Sbjct: 4  TVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 63

Query: 63 KLDEQTQYGRHRWVEYAEKGRYNASQ 89
          KL + TQYGRHRWVEYA K RYNASQ
Sbjct: 64 KLGD-TQYGRHRWVEYASKDRYNASQ 88

[Close]

BLAST of Carg20783 vs. Swiss-Prot
Match: sp|Q1XDS2|YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-08
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 178 GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK-VTFPVALLNN 237
           G ISLL GF+++  +S   G  G   +IAA + V  TE  ++  YS  K +   + L NN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAATELTSKIVYSSHKQLNIKINLFNN 90

Query: 238 FKMGFTYGLFIDAFKLAS 255
           FK+G TYGLF+DAFKL S
Sbjct: 91  FKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Carg20783 vs. Swiss-Prot
Match: sp|P72983|YC20L_SYNY3 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-08
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 152 RLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCV 211
           RL  I+ +  +    +FR+P RR     +S L GF+V   ++ + G     DV+ A   +
Sbjct: 5   RLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFIL 64

Query: 212 LLTEYVTRFYYSR--PKVTFPVALLNNFKMGFTYGLFIDAFKLAS 255
           L  E V R++Y R          +LN FKMG +Y LF++AFKL S
Sbjct: 65  LFCELVNRWFYRRGVKMGDLQAEVLNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of Carg20783 vs. Swiss-Prot
Match: sp|P51214|YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-07
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 178 GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPVALLNN 237
           G ISLL GF+++  +S   G  G   +IAA + V   E V++  YS + K    + LLNN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVRINLLNN 90

Query: 238 FKMGFTYGLFIDAFKLAS 255
            K+G TYGLF+DAFKL S
Sbjct: 91  LKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Carg20783 vs. Swiss-Prot
Match: sp|Q54MV7|NDUAC_DICDI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium discoideum OX=44689 GN=ndufa12 PE=2 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 4.8e-04
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 49 TLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQGSSSP 94
          TLVGVDK GN+YY+  + Q  YGRHRWVEY   G Y ++  ++ P
Sbjct: 33 TLVGVDKVGNRYYE--NRQEIYGRHRWVEY---GDYKSNDPTTIP 72

[Close]

BLAST of Carg20783 vs. TrEMBL
Match: tr|A0A0A0KPS1|A0A0A0KPS1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.4e-70
Identity = 136/150 (90.67%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 106 VVSTGLLNYAFTPQKNASYWRYDMIKSRPS-PRSLCIKAVQDTGGPRRLVDIIRLVPEIS 165
           +V T LLNY FTP+ N SYWRYDM+KSRPS PRS  +KAVQDTGGPRRLVDIIRLVPE+S
Sbjct: 7   LVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELS 66

Query: 166 RNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR 225
           RNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR
Sbjct: 67  RNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR 126

Query: 226 PKVTFPVALLNNFKMGFTYGLFIDAFKLAS 255
           PKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 127 PKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Carg20783 vs. TrEMBL
Match: tr|A0A1S3CT33|A0A1S3CT33_CUCME (uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.2e-69
Identity = 135/150 (90.00%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 106 VVSTGLLNYAFTPQKNASYWRYDMIKSRPS-PRSLCIKAVQDTGGPRRLVDIIRLVPEIS 165
           +V TGLLNY F+ + N+SYWRYDM+KSRPS PRS  +KAVQDTGGPRRLVDIIRLVPE+S
Sbjct: 7   LVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELS 66

Query: 166 RNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR 225
           RNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR
Sbjct: 67  RNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR 126

Query: 226 PKVTFPVALLNNFKMGFTYGLFIDAFKLAS 255
           PKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 127 PKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Carg20783 vs. TrEMBL
Match: tr|A0A251MZY5|A0A251MZY5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G123300 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.8e-60
Identity = 120/149 (80.54%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 106 VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISR 165
           +VSTGL  +  +PQ   S+ +Y +   RPSP  L ++AVQ+TGG RRLVDIIR VPE+SR
Sbjct: 7   LVSTGLHKFGLSPQNRVSHGKYGVFTLRPSPGFLRVRAVQETGGSRRLVDIIRNVPELSR 66

Query: 166 NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 225
           NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIA+VVCVLLTEYVT+FYYSRP
Sbjct: 67  NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIASVVCVLLTEYVTKFYYSRP 126

Query: 226 KVTFPVALLNNFKMGFTYGLFIDAFKLAS 255
           KVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 127 KVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Carg20783 vs. TrEMBL
Match: tr|A0A2P6PMC0|A0A2P6PMC0_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0256951 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.5e-58
Identity = 118/147 (80.27%), Postives = 128/147 (87.07%), Query Frame = 0


Query: 108 STGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNY 167
           STGL  +  +PQ   S+ +Y +   R SP  L ++AVQ+ GG RRLVDIIR VPE+SRNY
Sbjct: 9   STGLHKFGLSPQSRVSHMKYGVFTLRSSPGFLRVRAVQENGGSRRLVDIIRTVPELSRNY 68

Query: 168 FRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKV 227
           FRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT+FYYSRPKV
Sbjct: 69  FRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTKFYYSRPKV 128

Query: 228 TFPVALLNNFKMGFTYGLFIDAFKLAS 255
           TFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 129 TFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Carg20783 vs. TrEMBL
Match: tr|A0A2C9VQQ9|A0A2C9VQQ9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G142700 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.3e-58
Identity = 117/139 (84.17%), Postives = 128/139 (92.09%), Query Frame = 0


Query: 116 FTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRA 175
           F  ++  S+ +Y+++ SR S R L I+AVQ+ GGPRRLVDIIR+VPEISRNYFRSPSRRA
Sbjct: 17  FIHKRRVSHGKYEILVSRTSRRMLTIQAVQENGGPRRLVDIIRIVPEISRNYFRSPSRRA 76

Query: 176 LFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPVALLN 235
           LFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEYVTRFYYSRPKVTFPVALLN
Sbjct: 77  LFGGISLLGGFYVAQTISLSFGALGVNDVIAAVICVLLTEYVTRFYYSRPKVTFPVALLN 136

Query: 236 NFKMGFTYGLFIDAFKLAS 255
           NFKMGFTYGLFIDAFKLAS
Sbjct: 137 NFKMGFTYGLFIDAFKLAS 155

The following BLAST results are available for this feature:

BLAST of Carg20783 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549885.1	1.4e-76	98.66	uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886....	[more]
XP_022928979.1	2.4e-76	97.99	uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacteriz...	[more]
XP_022969949.1	5.8e-75	97.32	uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized...	[more]
XP_004143642.1	9.6e-70	90.67	PREDICTED: uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypotheti...	[more]
XP_008467245.1	4.8e-69	90.00	PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo]	[more]

BLAST of Carg20783 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43050.1	4.2e-51	87.07	Protein of unknown function (DUF565)	[more]
AT3G03100.1	3.9e-33	73.26	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	[more]
AT1G65420.1	1.7e-04	36.25	Protein of unknown function (DUF565)	[more]

BLAST of Carg20783 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M9M9\|NDUAC_ARATH	7.1e-32	73.26	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabid...	[more]
sp\|Q1XDS2\|YCF20_PYRYE	2.5e-08	46.15	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
sp\|P72983\|YC20L_SYNY3	4.2e-08	35.24	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
sp\|P51214\|YCF20_PORPU	1.2e-07	46.15	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
sp\|Q54MV7\|NDUAC_DICDI	4.8e-04	53.33	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium d...	[more]

BLAST of Carg20783 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPS1\|A0A0A0KPS1_CUCSA	6.4e-70	90.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=4 SV=1	[more]
tr\|A0A1S3CT33\|A0A1S3CT33_CUCME	3.2e-69	90.00	uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644...	[more]
tr\|A0A251MZY5\|A0A251MZY5_PRUPE	7.8e-60	80.54	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G123300 PE=4 SV=1	[more]
tr\|A0A2P6PMC0\|A0A2P6PMC0_ROSCH	2.5e-58	80.27	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0256951 PE=4...	[more]
tr\|A0A2C9VQQ9\|A0A2C9VQQ9_MANES	3.3e-58	84.17	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G142700 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008137	NADH dehydrogenase (ubiquinone) activity
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR007763	NDUFA12
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20783-RA	Carg20783-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 200..254 e-value: 2.0E-19 score: 69.8
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 106..254
IPR007763	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	PFAM	PF05071	NDUFA12	coord: 49..87 e-value: 3.4E-9 score: 37.3
None	No IPR available	PANTHER	PTHR33787:SF2	SUBFAMILY NOT NAMED	coord: 106..254

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20783	Cla002354	Watermelon (97103) v1	carwmB0737
Carg20783	Csa5G172820	Cucumber (Chinese Long) v2	carcuB0756
Carg20783	MELO3C005389	Melon (DHL92) v3.5.1	carmeB0735
Carg20783	ClCG01G005370	Watermelon (Charleston Gray)	carwcgB0716
Carg20783	CSPI05G08230	Wild cucumber (PI 183967)	carcpiB0773
Carg20783	Cucsa.115450	Cucumber (Gy14) v1	carcgyB0830
Carg20783	CmaCh02G010280	Cucurbita maxima (Rimu)	carcmaB1034
Carg20783	CmaCh15G013970	Cucurbita maxima (Rimu)	carcmaB1033
Carg20783	CmoCh02G010440	Cucurbita moschata (Rifu)	carcmoB1005
Carg20783	CmoCh15G014640	Cucurbita moschata (Rifu)	carcmoB1004
Carg20783	Lsi09G005670	Bottle gourd (USVL1VR-Ls)	carlsiB676
Carg20783	Cp4.1LG13g00560	Cucurbita pepo (Zucchini)	carcpeB1040
Carg20783	Cp4.1LG05g06900	Cucurbita pepo (Zucchini)	carcpeB1041
Carg20783	CsGy5G005620	Cucumber (Gy14) v2	carcgybB0735
Carg20783	MELO3C005389.2	Melon (DHL92) v3.6.1	carmedB0746
Carg20783	CsaV3_5G005620	Cucumber (Chinese Long) v3	carcucB0776
Carg20783	Cla97C01G005580	Watermelon (97103) v2	carwmbB0774

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20783	Carg08448	Silver-seed gourd	carcarB584

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20783	Wax gourd	carwgoB0873