CmaCh02G010280 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G010280
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNadh dehydrogenase ubiquinone 1 alpha subcomplex subunit 12
LocationCma_Chr02 : 6115093 .. 6119190 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTCATCATCCACGTACATCTTCGTTCGATCTGGGAGCGGAATCAAGGCACCTGCTTGCTGAAGCTGAATAGAAAACGAAAATCGAGAGTCGAAAGCGCCGGAACTCCGAGGTAGAGAAATGGCGTCGGTGGTGCGGGGGATTGTGAAGTCGATCAAAGATAAAGGGATCGGCACTTTCTGGAGAGAGCTCAAGGAAGAAGGCTACTTGTATTATTTTCCTGCCCTATTTTTCTTTTTGATCCATGTTTTTTTTTTTTAATCAAATCTTTTGAGGGATCTTAGGGTTTGTTACTTTAGGATAATTGTCAAGTTTGAATATGAATTCGTACCATTTGTTTCTCTTATGCTTAATCAATGTGATGTATTGGTGTTTCTCTTATTGTTCTGGAAAGGGTTGTTTTAATGTTCAATCAGTATGGGTATTTCTTTCCTTACATTGGATGTTTCAGACGCCAATAGCTGCGTGAGAAATGCAAATTTTGTTGATTATATACTCTCTCTACGCTCTTAGAATTAGCTACTTGGGATTGCTTTCGCAGAATTGTATTTTGTGTCGCCATAGAATGTGCTAGATGTTTTTTTCCCCTCTCTATGGACTTGGTTTGCACTGTTGATCAACCATTCAATATCGTCTCTGTTTCTAAAGCAATATTAGAAATTGGATTGCGCTAACCATTTTTGTTTAATTGAATCTTGCAGGAAATGCTTACCCGATGGAAACCTATTGTAAGTTACATTTTCCATAATATTGAGCTTTCCTTTGAAATGATTTATGATTAACATCCTCTCTTCCCTCCATACACACACGTTCCCGTTTAGAAAAGTCGTTGTCGCCTTCTTTCACGTGCTGTCTGTGCTAGTTCGTGGATGACCTAGATTGTGTGGACCATAATTACTCACTATAAGCTTGTGTCAAAGAATATCATCCTCCTTAAGAAATATCCAAATTCATTTTGCAAGACGAGCCATTTTTAGGTTACTAATTGGAAGACCACCCTTTCCAACCAGTAAAGCGATCTCTTTCCCATTTAGTTGGTGACTTCCTCCACTGGGATCAGCCCCCTCTTCGGAAAACTATGATTAATTTGGCACTACCTTTTAAGGCCATGGTGGGGGGAGAAAAGAAAAGGAACAAAAATGAAAGTTCTTATACAAAGCTTTAGTGGGTCATTTGGGTGGTATTGTGATAACTGAAATCACGATGGTCTTCCAAAATAATATATTATGCTAATATACTCAAGAAAGAGAATATGATGTACAGACTTGCTAAATGGTCACTGGTCAGTTCATTCCACTTATAATGTAGGTCTGAAAATGCTTACAGGTTATGTTTTTCAATCTAAATTGCTGTATATTAAACCAATTCTCTCATTTGTATTTTGTGTTTCTCTTCTTGTGCCTTTTCTCTCTTGTCTAAGCTTTTTCTATTCCTTAAAATTTCCACAATATTAATATCTAATGTTTTTTAGATGAATGTAAATACACATAAATGTTATATTTAAGTCTTGAGCTACTAAAAACTGTATTATCAATTAACTAAACCATGTACTGCAGTTTTTTCCTTGATTCAAATGATTTGTGCAATTATTTTATGATTTTCATGATACTTTTTGGAATTATCCATCAACAATATAACTTGGCACTTTAATTGACGCCAGCCTTTATTTTTGGGGGTCTCAGTCATACACTGAATAATTTCCTTTCCTTGCAAACTATGCATTTTATTTGGTTTAGTGAGGCAATCTTAATCATCACTTATTCTGTTTATTTTGCTTATTCAGGCAAACTAAAATTCACAAAATTGGTGCGACACTTGTGGGTGTTGATAAGTTTGGCAATAAATATTACCAGAAGCTCGATGAAGAGACTCAATATGGTATTTTTTTTCCTGTCTAATTTGTTTTCATTGGAGTTTCACGATGTTACTACCTATACCTATTTTCTCTGGGTCAAGGTTAAGATACATAAACCATTGCTTAAGAAACTTACCATGTTAGGTTTATCTTTTGTCTGGTAGATTAAGTTGCAGGAATGTTTAAACGATAAATATTTTATATGCAGAGAAGGAATGTTTAATTGTTTAAAATTTTTACTCTTTTCTTTTATAAACTTTGCCATCATATGTAACATTGTTAATTCAAACAGATTGATTATATATCTTGTTACAAACTCATGCAGTAGGTCTACATTCCCTTGCATTACATGTAACTAGTTTTTTCTGTTCAAAACTCCCCAAGTCCTGTGCTAGGTTAAAGGGATTGTCACTTCACGTTTTGGAGGAGATTTTGGTGAACTCTTGCTTTCGTGATAGAAGAGTCTTGTGGCAAGCTTGTTCTTTTGCTATTCTGTGGGGGTGTGGCTCGAGACGAGTAGGTTTTAGAGGGATGGAGAGGGCTTTGGAAGAGGTGCGGAGGGCTGTGAGCCTTAATGCGTCATTATGGTCGTCTGTAAATCAGTTCTTTTGTAATTATCAGCTTGGGGAAGCATTTTGGATTGGAGTCCGTTCTTGTTGTTAGTTGAACTCCATTTGCAGTCCTTTTGTTTGTATGCCCTTGCAAAATTTTTCTCCTCTCAATAAATGCTTAGTTACTTTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAGTTCCTTCTAATAATATCTAGCTGATAAGAATCCAAGAAAATCTTACTGGAACCCTCAACAGTAAAAGCAAGAAAGGAAGTTTGAAATATGTAGGATGAGGATGACGCATTTTATATATTTTCCATCAAATTCACACAGGCTTGTTTCATGTTTACGAAAGAATTTGTGAACATTATTAGAACTCTTAATACAATTTTTATCACTGGAAGTGTTCTTTAGCCTTCTCTTTTTTATTTTGGGGAAAGCTGAGCTAGCGAATTTGCCATTTCTGTAGGAAGACACAGGTGGGTTGAATATGCAGAGAAGGGTCGATATAATGCTTCTCAGGTGCCACCCGAATGGCATGGCTGGCTCCACTACATAACTGATCACACAGGAGACGAGGTAATTCCCTTATCCATAACAATAACAATGATAAGGCTATATGTATAAAACAAACCTTAGCCTTTTAGTAATTTCAATTGTCTTCTTTTAAAAAATTTCAATTGTCTTCTTTTAAAAAATTTCAATTCTGCTCGCAATGTATTAGAAAAATCTCAATCAGGTCCTATAATAATTTGTTGATTATAAGTTGATATATCATTTTAAAAATACATATGGACGTACTACTTGGATGCCACTTCGAAACATAAAATTCAAATCTTCCAATAAACAAAATTTCTTTCTTTCATGTGGTATGCCCATGTGTCCAAGTAAAACAGTACTTTAATGATACATGAATTTGCCTTTAACAAATTTATATATAGCAAAACCTAATCTTTCAAGAAGAAATTAAGAGTTATATAAATGATTATAGACCATATGGTTTCTTTAGCCTAATAATAAAATAAAAGGAGTTTTTTTTTTTTTTCACCTGGCGATGTTGTCATTGATATGAAAAATATTTTGCAGCTTCTGATGCTGAAACCCAGCAGGTATGGAATAGAACATAAGGAAAACTTCTCCGGGGAAGGTGAAGAACTTATCTACCATTCCAAAGGACATGCTCTTAATCCTGGACAGAGAGATTGGACTCGATACCAGTCATGGCAACCAACCAAGTCCTAAGTAATTTATCTATCAATCCCTTTCTTCAATCTGGAAATCCTTGGGATATTTGGTTGTCTTGTTTCTTCTGAATAAGCTACTTGTTATCTTATGCAAGCTGTGAAACATTCATCTTGTTTTGCTGCACAACACATGCGATGAATTTTTCAGCATGTTTCTGATTTTTGAAATTTTTAACAAATTCATTGTTGTGCCATCTCCTTCGAAACTCTCAAAATGTTGATATCTGCATTCGGCTATAATGAAGATCATAGTCAAATTGTGATTGACAGGCTTTAGATCCACAGTATTTTCATGTAGGCTTATTCAAAGATCGCCTAGTTGATAGCCGGACCAATGCCCATTCATCAATTGGATATCCATCTTTGTTGTATTGGTTAGCAATGATTCTTTATTGCGTTGGAGTGGAAGATTCATCA

mRNA sequence

CGTCATCATCCACGTACATCTTCGTTCGATCTGGGAGCGGAATCAAGGCACCTGCTTGCTGAAGCTGAATAGAAAACGAAAATCGAGAGTCGAAAGCGCCGGAACTCCGAGGTAGAGAAATGGCGTCGGTGGTGCGGGGGATTGTGAAGTCGATCAAAGATAAAGGGATCGGCACTTTCTGGAGAGAGCTCAAGGAAGAAGGCTACTTGAAATGCTTACCCGATGGAAACCTATTGCAAACTAAAATTCACAAAATTGGTGCGACACTTGTGGGTGTTGATAAGTTTGGCAATAAATATTACCAGAAGCTCGATGAAGAGACTCAATATGGAAGACACAGGTGGGTTGAATATGCAGAGAAGGGTCGATATAATGCTTCTCAGGTGCCACCCGAATGGCATGGCTGGCTCCACTACATAACTGATCACACAGGAGACGAGCTTCTGATGCTGAAACCCAGCAGGTATGGAATAGAACATAAGGAAAACTTCTCCGGGGAAGGTGAAGAACTTATCTACCATTCCAAAGGACATGCTCTTAATCCTGGACAGAGAGATTGGACTCGATACCAGTCATGGCAACCAACCAAGTCCTAAGTAATTTATCTATCAATCCCTTTCTTCAATCTGGAAATCCTTGGGATATTTGGTTGTCTTGTTTCTTCTGAATAAGCTACTTGTTATCTTATGCAAGCTGTGAAACATTCATCTTGTTTTGCTGCACAACACATGCGATGAATTTTTCAGCATGTTTCTGATTTTTGAAATTTTTAACAAATTCATTGTTGTGCCATCTCCTTCGAAACTCTCAAAATGTTGATATCTGCATTCGGCTATAATGAAGATCATAGTCAAATTGTGATTGACAGGCTTTAGATCCACAGTATTTTCATGTAGGCTTATTCAAAGATCGCCTAGTTGATAGCCGGACCAATGCCCATTCATCAATTGGATATCCATCTTTGTTGTATTGGTTAGCAATGATTCTTTATTGCGTTGGAGTGGAAGATTCATCA

Coding sequence (CDS)

ATGGCGTCGGTGGTGCGGGGGATTGTGAAGTCGATCAAAGATAAAGGGATCGGCACTTTCTGGAGAGAGCTCAAGGAAGAAGGCTACTTGAAATGCTTACCCGATGGAAACCTATTGCAAACTAAAATTCACAAAATTGGTGCGACACTTGTGGGTGTTGATAAGTTTGGCAATAAATATTACCAGAAGCTCGATGAAGAGACTCAATATGGAAGACACAGGTGGGTTGAATATGCAGAGAAGGGTCGATATAATGCTTCTCAGGTGCCACCCGAATGGCATGGCTGGCTCCACTACATAACTGATCACACAGGAGACGAGCTTCTGATGCTGAAACCCAGCAGGTATGGAATAGAACATAAGGAAAACTTCTCCGGGGAAGGTGAAGAACTTATCTACCATTCCAAAGGACATGCTCTTAATCCTGGACAGAGAGATTGGACTCGATACCAGTCATGGCAACCAACCAAGTCCTAA

Protein sequence

MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKYYQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEHKENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Homology
[Close]
BLAST of CmaCh02G010280 vs. Swiss-Prot
Match: NDUAC_ARATH (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-71
Identity = 118/156 (75.64%), Postives = 138/156 (88.46%), Query Frame = 1 

Query: 3   SVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKYYQ 62
           +V +  +++I++KG+G F R ++EEG+++CLPDGNLLQTKIH IGATLVGVDKFGNKYYQ
Sbjct: 4   TVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 63

Query: 63  KLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEHKE 122
           KL  +TQYGRHRWVEYA K RYNASQVP EWHGWLH+ITDHTGDELL LKP RYG+EHKE
Sbjct: 64  KLG-DTQYGRHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKE 123

Query: 123 NFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           NFSGEG+  IYHSKGH LNPGQ++WTRYQSW PTK+
Sbjct: 124 NFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKT 158

[Close]
BLAST of CmaCh02G010280 vs. Swiss-Prot
Match: NDUAC_CAEEL (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=3 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-14
Identity = 56/144 (38.89%), Postives = 77/144 (53.47%), Query Frame = 1 

Query: 17  IGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKYYQKLDEETQYGRHRWV 76
           I  F + +KE G +K +     L     ++G TLVG D FGN+YY+  +      R+RWV
Sbjct: 12  IQKFGQMVKEIGGVKAVLKKRYLMDAT-RVG-TLVGSDNFGNRYYE--NNAYFVPRNRWV 71

Query: 77  EYAEKG--RYNASQVPPEWHGWLHYITDHTGDELLMLKP---SRYGIEHKENFSGEGEEL 136
           E+ +K    Y+A+QVPPEWH WLH+IT    D+   +KP     + +EHKEN S      
Sbjct: 72  EFPDKVWLDYDATQVPPEWHSWLHHIT----DDAPSVKPPPTQDWVLEHKENTS------ 131

Query: 137 IYHSKGHALNPGQRDWTRYQSWQP 156
           IY  K +   P     T+ Q WQP
Sbjct: 132 IYADKKYV--PYSTTRTKIQGWQP 139

[Close]
BLAST of CmaCh02G010280 vs. Swiss-Prot
Match: NDUAC_DICDI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-13
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 1 

Query: 49  TLVGVDKFGNKYYQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDEL 108
           TLVGVDK GN+YY+   E   YGRHRWVEY +    + + +PPE+H W+H+++D    E+
Sbjct: 33  TLVGVDKVGNRYYENRQE--IYGRHRWVEYGDYKSNDPTTIPPEYHSWIHHVSDKLPSEM 92

Query: 109 LMLKPSRYGIEHKENFSG 127
           L   P+ Y   H  N +G
Sbjct: 93  LPFSPT-YKRPHIANPTG 107

[Close]
BLAST of CmaCh02G010280 vs. Swiss-Prot
Match: NDUAC_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 1 

Query: 28  GYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKYYQKLDEETQYGRHRWVEYAEK--GR-- 87
           GYL+        +T   K+G TLVG DK+GNKYY+  D +  +GRHRWV Y  +  G+  
Sbjct: 22  GYLRVF-----FRTNDAKVG-TLVGEDKYGNKYYE--DNKQFFGRHRWVVYTTEMNGKNT 81

Query: 88  ---YNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEHKENFSGEGEELIYHS 136
               + S VPPEWH WLH ITD       +         HK N +G  E+ + +S
Sbjct: 82  FWDVDGSMVPPEWHHWLHSITDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128

[Close]
BLAST of CmaCh02G010280 vs. Swiss-Prot
Match: NDUAC_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-12
Identity = 44/115 (38.26%), Postives = 60/115 (52.17%), Query Frame = 1 

Query: 28  GYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKYYQKLDEETQYGRHRWVEYAEK--GR-- 87
           GYL+        +T   K+G TLVG DK+GNKYY+  D +  +GRHRWV Y  +  G+  
Sbjct: 22  GYLRVF-----FRTNDAKVG-TLVGEDKYGNKYYE--DNKQFFGRHRWVVYTTEMNGKNT 81

Query: 88  ---YNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEHKENFSGEGEELIYHS 136
               + S VPPEWH WLH +TD       +         HK N +G  E+ + +S
Sbjct: 82  FWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNMTGTPEQYVPYS 128

[Close]
BLAST of CmaCh02G010280 vs. TrEMBL
Match: A0A0A0KNC9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172840 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 3.2e-90
Identity = 154/158 (97.47%), Postives = 157/158 (99.37%), Query Frame = 1 

Query: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60
           MASVVRGI+KSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIH IGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120
           YQK+DEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLH+ITDHTGDELLMLKPSRYGIEH
Sbjct: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]
BLAST of CmaCh02G010280 vs. TrEMBL
Match: U5CQW5_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00048p00149070 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.5e-76
Identity = 129/158 (81.65%), Postives = 147/158 (93.04%), Query Frame = 1 

Query: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60
           MASVVR  +K+IK+KG+  F+RELKEEGYL+CLPDGNLLQTKIH IGATLVGVDKFGNKY
Sbjct: 1   MASVVRAAMKAIKEKGLRNFFRELKEEGYLRCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120
           Y++L E+TQ+GRHRWVEY +KG YNASQVPPEWHGWLH+ITDHTGDELLMLKP RYG+EH
Sbjct: 61  YERL-EDTQFGRHRWVEYGDKGCYNASQVPPEWHGWLHFITDHTGDELLMLKPKRYGVEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           +ENFSGEG+E IYHSKGH+LNPGQ+DWTRYQ WQPTK+
Sbjct: 121 RENFSGEGDEYIYHSKGHSLNPGQKDWTRYQPWQPTKA 157

[Close]
BLAST of CmaCh02G010280 vs. TrEMBL
Match: K4BJB2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 5.8e-76
Identity = 130/157 (82.80%), Postives = 144/157 (91.72%), Query Frame = 1 

Query: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60
           MASVVR I +SIK+KGIG F +ELK+EGY++CL DGNLLQTKIH IGATLVGVDKFGNKY
Sbjct: 1   MASVVRSIFQSIKEKGIGNFLKELKQEGYVRCLADGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120
           Y+KL  +TQYGRHRWVEYA+K RYNASQVPPEWHGWLH++TDHTGDELL+LKP RYGIEH
Sbjct: 61  YEKLG-DTQYGRHRWVEYAQKNRYNASQVPPEWHGWLHHVTDHTGDELLLLKPKRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTK 158
           KENFSGEG+  IYHSKGH LNPGQRDWTRYQ+WQPTK
Sbjct: 121 KENFSGEGDAYIYHSKGHTLNPGQRDWTRYQTWQPTK 156

[Close]
BLAST of CmaCh02G010280 vs. TrEMBL
Match: A0A0S3T653_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G234400 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-75
Identity = 128/154 (83.12%), Postives = 143/154 (92.86%), Query Frame = 1 

Query: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60
           MASVV+ ++KSI++KG GTF RELK+EGYL+CLPDGNLLQTKIH IGAT+VGVDKFGNKY
Sbjct: 1   MASVVKNVLKSIREKGFGTFLRELKDEGYLRCLPDGNLLQTKIHNIGATVVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120
           Y+KL  +TQYGRHRWVEYAEK RYNASQVPPEWHGWLH+ITDHTGDELL+LKP RYG+EH
Sbjct: 61  YEKLG-DTQYGRHRWVEYAEKSRYNASQVPPEWHGWLHFITDHTGDELLLLKPKRYGVEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQ 155
           KEN SGEGE+ IYHSKGHALNPGQRDWTRYQ W+
Sbjct: 121 KENLSGEGEQYIYHSKGHALNPGQRDWTRYQPWE 153

[Close]
BLAST of CmaCh02G010280 vs. TrEMBL
Match: A0A0L9TAP6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan442s006400 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-75
Identity = 128/154 (83.12%), Postives = 143/154 (92.86%), Query Frame = 1 

Query: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60
           MASVV+ ++KSI++KG GTF RELK+EGYL+CLPDGNLLQTKIH IGAT+VGVDKFGNKY
Sbjct: 1   MASVVKNVLKSIREKGFGTFLRELKDEGYLRCLPDGNLLQTKIHNIGATVVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120
           Y+KL  +TQYGRHRWVEYAEK RYNASQVPPEWHGWLH+ITDHTGDELL+LKP RYG+EH
Sbjct: 61  YEKLG-DTQYGRHRWVEYAEKSRYNASQVPPEWHGWLHFITDHTGDELLLLKPKRYGVEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQ 155
           KEN SGEGE+ IYHSKGHALNPGQRDWTRYQ W+
Sbjct: 121 KENLSGEGEQYIYHSKGHALNPGQRDWTRYQPWE 153

[Close]
BLAST of CmaCh02G010280 vs. TAIR10
Match: AT3G03100.1 (AT3G03100.1 NADH:ubiquinone oxidoreductase, 17.2kDa subunit)

HSP 1 Score: 270.4 bits (690), Expect = 7.0e-73
Identity = 118/156 (75.64%), Postives = 138/156 (88.46%), Query Frame = 1 

Query: 3   SVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKYYQ 62
           +V +  +++I++KG+G F R ++EEG+++CLPDGNLLQTKIH IGATLVGVDKFGNKYYQ
Sbjct: 4   TVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 63

Query: 63  KLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEHKE 122
           KL  +TQYGRHRWVEYA K RYNASQVP EWHGWLH+ITDHTGDELL LKP RYG+EHKE
Sbjct: 64  KLG-DTQYGRHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKE 123

Query: 123 NFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           NFSGEG+  IYHSKGH LNPGQ++WTRYQSW PTK+
Sbjct: 124 NFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKT 158

[Close]
BLAST of CmaCh02G010280 vs. NCBI nr
Match: gi|778700574|ref|XP_004143640.2| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 339.0 bits (868), Expect = 4.6e-90
Identity = 154/158 (97.47%), Postives = 157/158 (99.37%), Query Frame = 1 

Query: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60
           MASVVRGI+KSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIH IGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120
           YQK+DEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLH+ITDHTGDELLMLKPSRYGIEH
Sbjct: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]
BLAST of CmaCh02G010280 vs. NCBI nr
Match: gi|659073080|ref|XP_008467243.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 333.2 bits (853), Expect = 2.5e-88
Identity = 151/158 (95.57%), Postives = 155/158 (98.10%), Query Frame = 1 

Query: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60
           MASVVRGI+KSIKDKGIGTFWRELKEEGYLKCL DGNLLQTKIH IGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLADGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120
           YQ++DEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLH+ITDHTGDELLMLKPSRYGIEH
Sbjct: 61  YQRVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEGEE IYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEEFIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]
BLAST of CmaCh02G010280 vs. NCBI nr
Match: gi|743779162|ref|XP_010920046.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 301.2 bits (770), Expect = 1.1e-78
Identity = 135/158 (85.44%), Postives = 148/158 (93.67%), Query Frame = 1 

Query: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60
           MASVVRG+ K+I++KGIG F +EL+EEGY KCL DGNLLQTKIH IGATLVGVDKFGNKY
Sbjct: 1   MASVVRGVFKAIREKGIGNFVKELREEGYTKCLLDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120
           Y+KL ++TQYGRHRWVEYAEKGRYNASQVPPEWHGWLH+ITDHTGDELLMLKP RYG+EH
Sbjct: 61  YEKL-QDTQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPKRYGVEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEG+E IYHSKGHALNPGQRDWTRYQ WQPTK+
Sbjct: 121 KENFSGEGDEYIYHSKGHALNPGQRDWTRYQPWQPTKN 157

[Close]
BLAST of CmaCh02G010280 vs. NCBI nr
Match: gi|672109142|ref|XP_008788681.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 300.1 bits (767), Expect = 2.3e-78
Identity = 134/158 (84.81%), Postives = 148/158 (93.67%), Query Frame = 1 

Query: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60
           MAS+VRG+ K+I++KGIG F +E++EEGY KCL DGNLLQTKIH IGATLVGVDKFGNKY
Sbjct: 1   MASLVRGVFKAIREKGIGNFVKEIREEGYAKCLLDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120
           Y+KL ++TQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKP RYG+EH
Sbjct: 61  YEKL-QDTQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPRRYGVEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEG+E IYHSKGHALNPGQR+WTRYQ WQPTKS
Sbjct: 121 KENFSGEGDEYIYHSKGHALNPGQRNWTRYQPWQPTKS 157

[Close]
BLAST of CmaCh02G010280 vs. NCBI nr
Match: gi|586759934|ref|XP_006854114.1| (PREDICTED: probable NADH dehydrogenase [ubiquinone])

HSP 1 Score: 293.5 bits (750), Expect = 2.2e-76
Identity = 129/158 (81.65%), Postives = 147/158 (93.04%), Query Frame = 1 

Query: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60
           MASVVR  +K+IK+KG+  F+RELKEEGYL+CLPDGNLLQTKIH IGATLVGVDKFGNKY
Sbjct: 1   MASVVRAAMKAIKEKGLRNFFRELKEEGYLRCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120
           Y++L E+TQ+GRHRWVEY +KG YNASQVPPEWHGWLH+ITDHTGDELLMLKP RYG+EH
Sbjct: 61  YERL-EDTQFGRHRWVEYGDKGCYNASQVPPEWHGWLHFITDHTGDELLMLKPKRYGVEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           +ENFSGEG+E IYHSKGH+LNPGQ+DWTRYQ WQPTK+
Sbjct: 121 RENFSGEGDEYIYHSKGHSLNPGQKDWTRYQPWQPTKA 157

The following BLAST results are available for this feature:
BLAST of CmaCh02G010280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDUAC_ARATH1.2e-7175.64Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabid... [more]
NDUAC_CAEEL3.1e-1438.89Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenor... [more]
NDUAC_DICDI5.9e-1344.87NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium d... [more]
NDUAC_PONPY1.7e-1239.13NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus ... [more]
NDUAC_GORGO2.9e-1238.26NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla... [more]
BLAST of CmaCh02G010280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNC9_CUCSA3.2e-9097.47Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172840 PE=4 SV=1[more]
U5CQW5_AMBTC1.5e-7681.65Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00048p00149070 PE=4 SV=... [more]
K4BJB2_SOLLC5.8e-7682.80Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A0S3T653_PHAAN1.3e-7583.12Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G234400 PE=... [more]
A0A0L9TAP6_PHAAN1.3e-7583.12Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan442s006400 PE=4 SV=1[more]
BLAST of CmaCh02G010280 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G03100.17.0e-7375.64 NADH:ubiquinone oxidoreductase, 17.2kDa subunit[more]
BLAST of CmaCh02G010280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778700574|ref|XP_004143640.2|4.6e-9097.47PREDICTED: probable NADH dehydrogenase [ubiquinone][more]
gi|659073080|ref|XP_008467243.1|2.5e-8895.57PREDICTED: probable NADH dehydrogenase [ubiquinone][more]
gi|743779162|ref|XP_010920046.1|1.1e-7885.44PREDICTED: probable NADH dehydrogenase [ubiquinone][more]
gi|672109142|ref|XP_008788681.1|2.3e-7884.81PREDICTED: probable NADH dehydrogenase [ubiquinone][more]
gi|586759934|ref|XP_006854114.1|2.2e-7681.65PREDICTED: probable NADH dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007763NDUFA12
Vocabulary: Molecular Function
TermDefinition
GO:0008137NADH dehydrogenase (ubiquinone) activity
GO:0009055electron carrier activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0006814 sodium ion transport
biological_process GO:0008150 biological_process
biological_process GO:0009853 photorespiration
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0051788 response to misfolded protein
biological_process GO:0009735 response to cytokinin
biological_process GO:0015992 proton transport
biological_process GO:0080129 proteasome core complex assembly
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0050897 cobalt ion binding
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G010280.1CmaCh02G010280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007763NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12PANTHERPTHR12910NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2coord: 14..157
score: 2.0
IPR007763NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12PFAMPF05071NDUFA12coord: 49..155
score: 2.4
NoneNo IPR availablePANTHERPTHR12910:SF2NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 12coord: 14..157
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G010280Cucsa.115450Cucumber (Gy14) v1cgycmaB0282
CmaCh02G010280Cla002352Watermelon (97103) v1cmawmB569
CmaCh02G010280Csa5G172840Cucumber (Chinese Long) v2cmacuB609
CmaCh02G010280MELO3C005389Melon (DHL92) v3.5.1cmameB531
CmaCh02G010280ClCG01G005390Watermelon (Charleston Gray)cmawcgB519
CmaCh02G010280CSPI05G08250Wild cucumber (PI 183967)cmacpiB615
CmaCh02G010280CmoCh02G010440Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G010280CmoCh15G014650Cucurbita moschata (Rifu)cmacmoB580
CmaCh02G010280Lsi09G005690Bottle gourd (USVL1VR-Ls)cmalsiB531
CmaCh02G010280Cp4.1LG13g00560Cucurbita pepo (Zucchini)cmacpeB603
CmaCh02G010280Cp4.1LG05g06900Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G010280MELO3C005389.2Melon (DHL92) v3.6.1cmamedB610
CmaCh02G010280CsaV3_5G005640Cucumber (Chinese Long) v3cmacucB0731
CmaCh02G010280Cla97C01G005610Watermelon (97103) v2cmawmbB601
CmaCh02G010280Bhi12G000649Wax gourdcmawgoB0714
CmaCh02G010280CsGy5G005640Cucumber (Gy14) v2cgybcmaB636
CmaCh02G010280Carg20783Silver-seed gourdcarcmaB1034
CmaCh02G010280Carg08448Silver-seed gourdcarcmaB0999
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh02G010280CmaCh15G013980Cucurbita maxima (Rimu)cmacmaB309
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G010280Cucurbita pepo (Zucchini)cmacpeB639
CmaCh02G010280Bottle gourd (USVL1VR-Ls)cmalsiB583
CmaCh02G010280Cucumber (Gy14) v2cgybcmaB394
CmaCh02G010280Melon (DHL92) v3.6.1cmamedB661
CmaCh02G010280Melon (DHL92) v3.6.1cmamedB664
CmaCh02G010280Cucumber (Chinese Long) v3cmacucB0711
CmaCh02G010280Watermelon (97103) v2cmawmbB649
CmaCh02G010280Wax gourdcmawgoB0723
CmaCh02G010280Wax gourdcmawgoB0729
CmaCh02G010280Cucurbita maxima (Rimu)cmacmaB346
CmaCh02G010280Cucurbita maxima (Rimu)cmacmaB396
CmaCh02G010280Cucurbita maxima (Rimu)cmacmaB495
CmaCh02G010280Cucurbita moschata (Rifu)cmacmoB587
CmaCh02G010280Cucurbita moschata (Rifu)cmacmoB591
CmaCh02G010280Wild cucumber (PI 183967)cmacpiB601
CmaCh02G010280Cucumber (Chinese Long) v2cmacuB596
CmaCh02G010280Melon (DHL92) v3.5.1cmameB579
CmaCh02G010280Watermelon (Charleston Gray)cmawcgB559
CmaCh02G010280Watermelon (97103) v1cmawmB564