CmoCh05G006030 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGTTCAGGAAGTTGACAGTTGATGCAGATTTTGCTACAAGTCTTTTTAATAGAAAGGAAGAGAAATGTTTTATCCCTCATCTTCTTCACTTTAGCGTCGTATCGTGTTCGGAAGATTCAACTAGTTCAATTGGATCATCGTCGTCGTCAAGCCTCTGTGACGACGATGCGTTATCGTCATTTTCATCTTCTTCTTCTTCGTCGTCTTTGTTATCTCAAAGAGAAGTTTGTGAGGAACAACAGCTGCTTTGTATCAAGTGAGTTCATGTTCTTTGAACTAAAATGTAGAGCTCTGTTTCAAATTCTAAAGTTTTTGGCATCTTGAATTCACCTCTTATGCAGAAAAGGGTTGTCAAAATTTTATGAAGGGAAATCACGAACCTTCTCATCCTTATCCGACGTGAAATGCGTAGACGACTTAGCAAAGGGAGAGAATGATTATAGAAAGAAATACTCTCGAATTACTCCCAAGGCTACCATATCAAAGAAGCATGGAAGAGCCTCTCTTGCAACCTTAGTGTCTAAGATGGACATTTCACTTCGCCCCGAGTAAAGGGAAGCTCGAACTATTTATCGTTAGTGTCAAGTTTAATGGGCGGTTCTAAAATTTACTTGATACGGGAAAATGATGAAATGTTTTTTTCTTCTTTTGTTGATATACTTCGAGTATAAGATAGAATATGTGCAAGTTTTATAATTTTGATTTTGGGCTTTCGAGCTAAAGCTAGAGTAAAAGTATTTTATCTTAATGGGACCAACTACGAATATAG ATGGAGTTCAGGAAGTTGACAGTTGATGCAGATTTTGCTACAAGTCTTTTTAATAGAAAGGAAGAGAAATGTTTTATCCCTCATCTTCTTCACTTTAGCGTCGTATCGTGTTCGGAAGATTCAACTAGTTCAATTGGATCATCGTCGTCGTCAAGCCTCTGTGACGACGATGCGTTATCGTCATTTTCATCTTCTTCTTCTTCGTCGTCTTTGTTATCTCAAAGAGAAGTTTGTGAGGAACAACAGCTGCTTTGTATCAAAAAAGGGTTGTCAAAATTTTATGAAGGGAAATCACGAACCTTCTCATCCTTATCCGACGTGAAATGCGTAGACGACTTAGCAAAGGGAGAGAATGATTATAGAAAGAAATACTCTCGAATTACTCCCAAGGCTACCATATCAAAGAAGCATGGAAGAGCCTCTCTTGCAACCTTAGTGTCTAAGATGGACATTTCACTTCGCCCCGAGTAAAGGGAAGCTCGAACTATTTATCGTTAGTGTCAAGTTTAATGGGCGGTTCTAAAATTTACTTGATACGGGAAAATGATGAAATGTTTTTTTCTTCTTTTGTTGATATACTTCGAGTATAAGATAGAATATGTGCAAGTTTTATAATTTTGATTTTGGGCTTTCGAGCTAAAGCTAGAGTAAAAGTATTTTATCTTAATGGGACCAACTACGAATATAG ATGGAGTTCAGGAAGTTGACAGTTGATGCAGATTTTGCTACAAGTCTTTTTAATAGAAAGGAAGAGAAATGTTTTATCCCTCATCTTCTTCACTTTAGCGTCGTATCGTGTTCGGAAGATTCAACTAGTTCAATTGGATCATCGTCGTCGTCAAGCCTCTGTGACGACGATGCGTTATCGTCATTTTCATCTTCTTCTTCTTCGTCGTCTTTGTTATCTCAAAGAGAAGTTTGTGAGGAACAACAGCTGCTTTGTATCAAAAAAGGGTTGTCAAAATTTTATGAAGGGAAATCACGAACCTTCTCATCCTTATCCGACGTGAAATGCGTAGACGACTTAGCAAAGGGAGAGAATGATTATAGAAAGAAATACTCTCGAATTACTCCCAAGGCTACCATATCAAAGAAGCATGGAAGAGCCTCTCTTGCAACCTTAGTGTCTAAGATGGACATTTCACTTCGCCCCGAGTAA
BLAST of CmoCh05G006030 vs. TrEMBL
Match: A0A0A0LLW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G372880 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11 Identity = 58/91 (63.74%), Postives = 66/91 (72.53%), Query Frame = 1
BLAST of CmoCh05G006030 vs. TrEMBL
Match: W9R779_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005880 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11 Identity = 66/127 (51.97%), Postives = 81/127 (63.78%), Query Frame = 1
BLAST of CmoCh05G006030 vs. TrEMBL
Match: A5BBL4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011279 PE=4 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09 Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1
BLAST of CmoCh05G006030 vs. TrEMBL
Match: F6HY89_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03340 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09 Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1
BLAST of CmoCh05G006030 vs. TrEMBL
Match: I3SDR4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09 Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 1
BLAST of CmoCh05G006030 vs. TAIR10
Match: AT5G56550.1 (AT5G56550.1 oxidative stress 3) HSP 1 Score: 52.4 bits (124), Expect = 3.0e-07 Identity = 53/130 (40.77%), Postives = 71/130 (54.62%), Query Frame = 1
BLAST of CmoCh05G006030 vs. TAIR10
Match: AT4G26288.1 (AT4G26288.1 FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06 Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1
BLAST of CmoCh05G006030 vs. NCBI nr
Match: gi|778671960|ref|XP_011649716.1| (PREDICTED: uncharacterized protein LOC105434656 [Cucumis sativus]) HSP 1 Score: 174.1 bits (440), Expect = 1.9e-40 Identity = 111/163 (68.10%), Postives = 128/163 (78.53%), Query Frame = 1
BLAST of CmoCh05G006030 vs. NCBI nr
Match: gi|659088447|ref|XP_008444986.1| (PREDICTED: suppressor protein SRP40-like [Cucumis melo]) HSP 1 Score: 170.6 bits (431), Expect = 2.1e-39 Identity = 111/163 (68.10%), Postives = 124/163 (76.07%), Query Frame = 1
BLAST of CmoCh05G006030 vs. NCBI nr
Match: gi|700207674|gb|KGN62793.1| (hypothetical protein Csa_2G372880 [Cucumis sativus]) HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11 Identity = 58/91 (63.74%), Postives = 66/91 (72.53%), Query Frame = 1
BLAST of CmoCh05G006030 vs. NCBI nr
Match: gi|703095142|ref|XP_010095455.1| (hypothetical protein L484_005880 [Morus notabilis]) HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11 Identity = 66/127 (51.97%), Postives = 81/127 (63.78%), Query Frame = 1
BLAST of CmoCh05G006030 vs. NCBI nr
Match: gi|502166373|ref|XP_004513873.1| (PREDICTED: uncharacterized protein LOC101489917 [Cicer arietinum]) HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10 Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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