CmoCh05G006030.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G006030.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	oxidative stress 3
Location	Cmo_Chr05 : 3019086 .. 3019858 (+)
Sequence length	688

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCAGGAAGTTGACAGTTGATGCAGATTTTGCTACAAGTCTTTTTAATAGAAAGGAAGAGAAATGTTTTATCCCTCATCTTCTTCACTTTAGCGTCGTATCGTGTTCGGAAGATTCAACTAGTTCAATTGGATCATCGTCGTCGTCAAGCCTCTGTGACGACGATGCGTTATCGTCATTTTCATCTTCTTCTTCTTCGTCGTCTTTGTTATCTCAAAGAGAAGTTTGTGAGGAACAACAGCTGCTTTGTATCAAGTGAGTTCATGTTCTTTGAACTAAAATGTAGAGCTCTGTTTCAAATTCTAAAGTTTTTGGCATCTTGAATTCACCTCTTATGCAGAAAAGGGTTGTCAAAATTTTATGAAGGGAAATCACGAACCTTCTCATCCTTATCCGACGTGAAATGCGTAGACGACTTAGCAAAGGGAGAGAATGATTATAGAAAGAAATACTCTCGAATTACTCCCAAGGCTACCATATCAAAGAAGCATGGAAGAGCCTCTCTTGCAACCTTAGTGTCTAAGATGGACATTTCACTTCGCCCCGAGTAAAGGGAAGCTCGAACTATTTATCGTTAGTGTCAAGTTTAATGGGCGGTTCTAAAATTTACTTGATACGGGAAAATGATGAAATGTTTTTTTCTTCTTTTGTTGATATACTTCGAGTATAAGATAGAATATGTGCAAGTTTTATAATTTTGATTTTGGGCTTTCGAGCTAAAGCTAGAGTAAAAGTATTTTATCTTAATGGGACCAACTACGAATATAG

mRNA sequence

ATGGAGTTCAGGAAGTTGACAGTTGATGCAGATTTTGCTACAAGTCTTTTTAATAGAAAGGAAGAGAAATGTTTTATCCCTCATCTTCTTCACTTTAGCGTCGTATCGTGTTCGGAAGATTCAACTAGTTCAATTGGATCATCGTCGTCGTCAAGCCTCTGTGACGACGATGCGTTATCGTCATTTTCATCTTCTTCTTCTTCGTCGTCTTTGTTATCTCAAAGAGAAGTTTGTGAGGAACAACAGCTGCTTTGTATCAAAAAAGGGTTGTCAAAATTTTATGAAGGGAAATCACGAACCTTCTCATCCTTATCCGACGTGAAATGCGTAGACGACTTAGCAAAGGGAGAGAATGATTATAGAAAGAAATACTCTCGAATTACTCCCAAGGCTACCATATCAAAGAAGCATGGAAGAGCCTCTCTTGCAACCTTAGTGTCTAAGATGGACATTTCACTTCGCCCCGAGTAAAGGGAAGCTCGAACTATTTATCGTTAGTGTCAAGTTTAATGGGCGGTTCTAAAATTTACTTGATACGGGAAAATGATGAAATGTTTTTTTCTTCTTTTGTTGATATACTTCGAGTATAAGATAGAATATGTGCAAGTTTTATAATTTTGATTTTGGGCTTTCGAGCTAAAGCTAGAGTAAAAGTATTTTATCTTAATGGGACCAACTACGAATATAG

Coding sequence (CDS)

ATGGAGTTCAGGAAGTTGACAGTTGATGCAGATTTTGCTACAAGTCTTTTTAATAGAAAGGAAGAGAAATGTTTTATCCCTCATCTTCTTCACTTTAGCGTCGTATCGTGTTCGGAAGATTCAACTAGTTCAATTGGATCATCGTCGTCGTCAAGCCTCTGTGACGACGATGCGTTATCGTCATTTTCATCTTCTTCTTCTTCGTCGTCTTTGTTATCTCAAAGAGAAGTTTGTGAGGAACAACAGCTGCTTTGTATCAAAAAAGGGTTGTCAAAATTTTATGAAGGGAAATCACGAACCTTCTCATCCTTATCCGACGTGAAATGCGTAGACGACTTAGCAAAGGGAGAGAATGATTATAGAAAGAAATACTCTCGAATTACTCCCAAGGCTACCATATCAAAGAAGCATGGAAGAGCCTCTCTTGCAACCTTAGTGTCTAAGATGGACATTTCACTTCGCCCCGAGTAA

Homology

[Close]

BLAST of CmoCh05G006030.1 vs. TrEMBL
Match: A0A0A0LLW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G372880 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 58/91 (63.74%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 1  MEFRKLTVDADFATSL----FNRKEEKCFIPHLLHFSVVSCSEDSTSSIGSSSSSSLCDD 60
          ME RKLTVDADFATS+    +NRKEEK  I H      V+ SE STSSIGS SSSS+CD+
Sbjct: 1  MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQF--TVAYSEGSTSSIGSISSSSVCDE 60

Query: 61 DALSSFSSS------SSSSSLLSQREVCEEQ 82
          DALSSFSSS      SS+SSLLSQ E+ E+Q
Sbjct: 61 DALSSFSSSSSCSSLSSTSSLLSQSELREQQ 89

[Close]

BLAST of CmoCh05G006030.1 vs. TrEMBL
Match: W9R779_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005880 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 66/127 (51.97%), Postives = 81/127 (63.78%), Query Frame = 1


Query: 33  SVVSCSEDSTS-SIGSSSSSSLCDDDALSSFSSSSSSSSLLSQREVCEEQQLLCIKKGLS 92
           S    SE+STS SIGS+SSS +  DDA SS + SS  S  L +       QL  IKKGLS
Sbjct: 37  STTCSSEESTSCSIGSASSSDMLADDASSSSTCSSPESHDLHEFSEPMTSQLP-IKKGLS 96

Query: 93  KFYEGKSRTFSSLSDVKCVDDLAKGENDYRKKYSR---ITPKATISKKHGRASLAT-LVS 152
           K+Y GK+RTF+SLS+VKCV+DLAK E  + K+  R    +PKA ISKK+ R   AT LVS
Sbjct: 97  KYYNGKARTFTSLSEVKCVEDLAKKEIPFVKRGHRPSFQSPKAIISKKNTRRGSATSLVS 156

Query: 153 KMDISLR 155
              +S R
Sbjct: 157 SKTLSCR 162

[Close]

BLAST of CmoCh05G006030.1 vs. TrEMBL
Match: A5BBL4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011279 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1


Query: 36  SCSEDSTSSIGSSSSSSLCDDDALSSFSSSSSSSSLLSQREVCEEQQLLC---IKKGLSK 95
           S  EDS +S GSS+SSS   DDA SS +S SS S   S   + E  +L+    IK+GLSK
Sbjct: 53  SSLEDSITSHGSSASSSDLVDDASSSSTSYSSVSPSHSSGPLYELSELMAQLPIKRGLSK 112

Query: 96  FYEGKSRTFSSLSDVKCVDDLAKGENDYRKKY--------------SRITPKATISKKHG 149
           +YEGKS++F+SLS V+ ++DLAK E+ YR+K               +   P+A ISKK G
Sbjct: 113 YYEGKSQSFTSLSSVRSIEDLAKKESPYRRKMKVCKSYGGGLDTHKAYTLPRAIISKKRG 172

[Close]

BLAST of CmoCh05G006030.1 vs. TrEMBL
Match: F6HY89_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03340 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1


Query: 36  SCSEDSTSSIGSSSSSSLCDDDALSSFSSSSSSSSLLSQREVCEEQQLLC---IKKGLSK 95
           S  EDS +S GSS+SSS   DDA SS +S SS S   S   + E  +L+    IK+GLSK
Sbjct: 53  SSLEDSITSHGSSASSSDLVDDASSSSTSYSSVSPSHSSGPLYELAELMAQLPIKRGLSK 112

Query: 96  FYEGKSRTFSSLSDVKCVDDLAKGENDYRKKY--------------SRITPKATISKKHG 149
           +YEGKS++F+SLS V+ ++DLAK E+ YR+K               +   P+A ISKK G
Sbjct: 113 YYEGKSQSFTSLSSVRSIEDLAKKESPYRRKMKVCKSYGGGLDTHKAYTLPRAIISKKRG 172

[Close]

BLAST of CmoCh05G006030.1 vs. TrEMBL
Match: I3SDR4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 1


Query: 33  SVVSCSEDSTSSIGSSSSSSLCDDDALSSFSSSSSSSSLLSQR----EVCEEQQLLCIKK 92
           S+ S SEDS +S+ SSSSS L D++  SS S+ S+SSS         E+ E    L +K+
Sbjct: 30  SIESVSEDSKNSVCSSSSSELADEEESSSASNLSTSSSSSHSNGPLYELSELMSHLPLKR 89

Query: 93  GLSKFYEGKSRTFSSLSDVKCVDDLAKGE--NDYRKKYS-------RITPKATISKKHGR 140
           GLSKFYEGK+++FSSLS V+ ++DL+K +   ++RKK           TPKATISKK  R
Sbjct: 90  GLSKFYEGKAQSFSSLSRVQSLEDLSKKDRPTNHRKKMKSCNSHRISYTPKATISKKSSR 149

[Close]

BLAST of CmoCh05G006030.1 vs. TAIR10
Match: AT5G56550.1 (AT5G56550.1 oxidative stress 3)

HSP 1 Score: 52.4 bits (124), Expect = 3.0e-07
Identity = 53/130 (40.77%), Postives = 71/130 (54.62%), Query Frame = 1


Query: 36  SCSEDSTSSIGSSSS--SSLCDDDALSSFSSSSSSSSLLSQREVCEEQQLLCIKKGLSKF 95
           S  ED++SS   SSS  S   +DD     SSSSS+  L    ++ +    L IK+GLSKF
Sbjct: 38  SDEEDNSSSCSLSSSMCSDFTEDDDDDDVSSSSSNGPL---EDLSDLMSHLPIKRGLSKF 97

Query: 96  YEGKSRTFSSLSDVKCVDDLAK---GENDY--RKKYSRIT-------------PKATISK 146
           YEGKS++F+SL +VK ++DL K      +Y  ++K SR T             PKATISK
Sbjct: 98  YEGKSQSFTSLGNVKSLEDLMKRGFKSRNYGAKRKSSRSTGGILDQSYKRVFSPKATISK 157

[Close]

BLAST of CmoCh05G006030.1 vs. TAIR10
Match: AT4G26288.1 (AT4G26288.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1


Query: 41  STSSIGSSSSSSLCDDDALSSFSSSSSSSSLLSQ------REVCEEQQLLCIKK-GLSKF 100
           S++ + SSSS S+C  D     SSSSSSSS  S        ++  +  ++ +KK GLSK+
Sbjct: 24  SSAKVSSSSSISMCSSDLTEDASSSSSSSSSSSNGPFDDLSDLISQLPIIQVKKGGLSKY 83

Query: 101 YEGKSRTFSSLSDVKCVDDLAKGENDYRKKYSR---ITPKATISKKHGRAS 142
           Y+GKS++F+SL++V  + DL K  +  +    R     PKATIS K  R S
Sbjct: 84  YKGKSQSFTSLANVTSLQDLVKRGSRTKSCCKRDYFYGPKATISMKATRTS 134

[Close]

BLAST of CmoCh05G006030.1 vs. NCBI nr
Match: gi|778671960|ref|XP_011649716.1| (PREDICTED: uncharacterized protein LOC105434656 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.9e-40
Identity = 111/163 (68.10%), Postives = 128/163 (78.53%), Query Frame = 1


Query: 1   MEFRKLTVDADFATSL----FNRKEEKCFIPHLLHFSVVSCSEDSTSSIGSSSSSSLCDD 60
           ME RKLTVDADFATS+    +NRKEEK  I H      V+ SE STSSIGS SSSS+CD+
Sbjct: 1   MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQF--TVAYSEGSTSSIGSISSSSVCDE 60

Query: 61  DALSSFSSSSS------SSSLLSQREVCEEQQLLCIKKGLSKFYEGKSRTFSSLSDVKCV 120
           DALSSFSSSSS      +SSLLSQ E+ E+Q  L IKKGLSKFYEGKSRTFSSLSDVK +
Sbjct: 61  DALSSFSSSSSCSSLSSTSSLLSQSELREQQ--LPIKKGLSKFYEGKSRTFSSLSDVKSI 120

Query: 121 DDLAKGENDYRKKYSRITPKATISKKHGRASLATLVSKMDISL 154
           +DLAK ENDY+KK +RI+P+ATISKKHGR+S AT++SK D  L
Sbjct: 121 EDLAKRENDYKKKDTRISPRATISKKHGRSSFATMLSKADTLL 159

[Close]

BLAST of CmoCh05G006030.1 vs. NCBI nr
Match: gi|659088447|ref|XP_008444986.1| (PREDICTED: suppressor protein SRP40-like [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 2.1e-39
Identity = 111/163 (68.10%), Postives = 124/163 (76.07%), Query Frame = 1


Query: 1   MEFRKLTVDADFATSL----FNRKEEKCFIPHLLHFSVVSCSEDSTSSIGSSSSSSLCDD 60
           ME RKLTVDADFATS+    +NRKEEK  I H      V+ SE STSSIGS SSSS+CDD
Sbjct: 1   MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQF--TVAYSEGSTSSIGSISSSSICDD 60

Query: 61  DALSSFSSSSSSSS---------LLSQREVCEEQQLLCIKKGLSKFYEGKSRTFSSLSDV 120
           D LSSFSSSSSSSS         LLSQ E+ E+Q  + IKKGLSKFYEGKSRTFSSLSDV
Sbjct: 61  DGLSSFSSSSSSSSSSSLSSTSSLLSQSELREQQ--VPIKKGLSKFYEGKSRTFSSLSDV 120

Query: 121 KCVDDLAKGENDYRKKYSRITPKATISKKHGRASLATLVSKMD 151
           K ++DLAK E D+RKK +RI+PKATISKKHGR+  ATLVSK D
Sbjct: 121 KSIEDLAKRETDHRKKDTRISPKATISKKHGRSYFATLVSKTD 159

[Close]

BLAST of CmoCh05G006030.1 vs. NCBI nr
Match: gi|700207674|gb|KGN62793.1| (hypothetical protein Csa_2G372880 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 58/91 (63.74%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 1  MEFRKLTVDADFATSL----FNRKEEKCFIPHLLHFSVVSCSEDSTSSIGSSSSSSLCDD 60
          ME RKLTVDADFATS+    +NRKEEK  I H      V+ SE STSSIGS SSSS+CD+
Sbjct: 1  MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQF--TVAYSEGSTSSIGSISSSSVCDE 60

Query: 61 DALSSFSSS------SSSSSLLSQREVCEEQ 82
          DALSSFSSS      SS+SSLLSQ E+ E+Q
Sbjct: 61 DALSSFSSSSSCSSLSSTSSLLSQSELREQQ 89

[Close]

BLAST of CmoCh05G006030.1 vs. NCBI nr
Match: gi|703095142|ref|XP_010095455.1| (hypothetical protein L484_005880 [Morus notabilis])

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 66/127 (51.97%), Postives = 81/127 (63.78%), Query Frame = 1


Query: 33  SVVSCSEDSTS-SIGSSSSSSLCDDDALSSFSSSSSSSSLLSQREVCEEQQLLCIKKGLS 92
           S    SE+STS SIGS+SSS +  DDA SS + SS  S  L +       QL  IKKGLS
Sbjct: 37  STTCSSEESTSCSIGSASSSDMLADDASSSSTCSSPESHDLHEFSEPMTSQLP-IKKGLS 96

Query: 93  KFYEGKSRTFSSLSDVKCVDDLAKGENDYRKKYSR---ITPKATISKKHGRASLAT-LVS 152
           K+Y GK+RTF+SLS+VKCV+DLAK E  + K+  R    +PKA ISKK+ R   AT LVS
Sbjct: 97  KYYNGKARTFTSLSEVKCVEDLAKKEIPFVKRGHRPSFQSPKAIISKKNTRRGSATSLVS 156

Query: 153 KMDISLR 155
              +S R
Sbjct: 157 SKTLSCR 162

[Close]

BLAST of CmoCh05G006030.1 vs. NCBI nr
Match: gi|502166373|ref|XP_004513873.1| (PREDICTED: uncharacterized protein LOC101489917 [Cicer arietinum])

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1


Query: 43  SSIGSSSSSSLCDDDALSSFSSSSSSSSLLSQREVCEEQQLLCIKKGLSKFYEGKSRTFS 102
           S I S S SSL    +  S SSSSSSSS+ S+ +  E    L IK+GLSK+Y GKSRTF 
Sbjct: 49  SDISSLSLSSLSWLSSPPSPSSSSSSSSIESKCDFSEFLVQLHIKRGLSKYYRGKSRTFR 108

Query: 103 SLSDVKCVDDLAKGENDYRKK--YSRI-TPKATISKKHGRASLATLVSK 149
           SLSDV+C++DL+K E  + KK  YS   +PK +ISKK GR+   +L+SK
Sbjct: 109 SLSDVRCLEDLSKKEIPHHKKKAYSPFQSPKTSISKKAGRSCFTSLLSK 157

The following BLAST results are available for this feature:

BLAST of CmoCh05G006030.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G006030.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLW5_CUCSA	1.0e-11	63.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G372880 PE=4 SV=1	[more]
W9R779_9ROSA	1.3e-11	51.97	Uncharacterized protein OS=Morus notabilis GN=L484_005880 PE=4 SV=1	[more]
A5BBL4_VITVI	1.6e-09	43.85	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011279 PE=4 SV=1	[more]
F6HY89_VITVI	2.1e-09	43.85	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03340 PE=4 SV=...	[more]
I3SDR4_LOTJA	2.7e-09	46.67	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of CmoCh05G006030.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G56550.1	3.0e-07	40.77	oxidative stress 3	[more]
AT4G26288.1	1.1e-06	39.64	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmoCh05G006030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778671960\|ref\|XP_011649716.1\|	1.9e-40	68.10	PREDICTED: uncharacterized protein LOC105434656 [Cucumis sativus]	[more]
gi\|659088447\|ref\|XP_008444986.1\|	2.1e-39	68.10	PREDICTED: suppressor protein SRP40-like [Cucumis melo]	[more]
gi\|700207674\|gb\|KGN62793.1\|	1.4e-11	63.74	hypothetical protein Csa_2G372880 [Cucumis sativus]	[more]
gi\|703095142\|ref\|XP_010095455.1\|	1.9e-11	51.97	hypothetical protein L484_005880 [Morus notabilis]	[more]
gi\|502166373\|ref\|XP_004513873.1\|	3.5e-10	52.29	PREDICTED: uncharacterized protein LOC101489917 [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh05G006030	CmoCh05G006030	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh05G006030.1	CmoCh05G006030.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G006030.1.exon.1	CmoCh05G006030.1.exon.1	exon
CmoCh05G006030.1.exon.2	CmoCh05G006030.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G006030.1.CDS.1	CmoCh05G006030.1.CDS.1	CDS
CmoCh05G006030.1.CDS.2	CmoCh05G006030.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G006030.1.three_prime_UTR.1	CmoCh05G006030.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33172	FAMILY NOT NAMED	coord: 36..123 score: 1.7