CmoCh05G006030 (gene) Cucurbita moschata (Rifu)

NameCmoCh05G006030
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Descriptionoxidative stress 3
LocationCmo_Chr05 : 3019086 .. 3019858 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTCAGGAAGTTGACAGTTGATGCAGATTTTGCTACAAGTCTTTTTAATAGAAAGGAAGAGAAATGTTTTATCCCTCATCTTCTTCACTTTAGCGTCGTATCGTGTTCGGAAGATTCAACTAGTTCAATTGGATCATCGTCGTCGTCAAGCCTCTGTGACGACGATGCGTTATCGTCATTTTCATCTTCTTCTTCTTCGTCGTCTTTGTTATCTCAAAGAGAAGTTTGTGAGGAACAACAGCTGCTTTGTATCAAGTGAGTTCATGTTCTTTGAACTAAAATGTAGAGCTCTGTTTCAAATTCTAAAGTTTTTGGCATCTTGAATTCACCTCTTATGCAGAAAAGGGTTGTCAAAATTTTATGAAGGGAAATCACGAACCTTCTCATCCTTATCCGACGTGAAATGCGTAGACGACTTAGCAAAGGGAGAGAATGATTATAGAAAGAAATACTCTCGAATTACTCCCAAGGCTACCATATCAAAGAAGCATGGAAGAGCCTCTCTTGCAACCTTAGTGTCTAAGATGGACATTTCACTTCGCCCCGAGTAAAGGGAAGCTCGAACTATTTATCGTTAGTGTCAAGTTTAATGGGCGGTTCTAAAATTTACTTGATACGGGAAAATGATGAAATGTTTTTTTCTTCTTTTGTTGATATACTTCGAGTATAAGATAGAATATGTGCAAGTTTTATAATTTTGATTTTGGGCTTTCGAGCTAAAGCTAGAGTAAAAGTATTTTATCTTAATGGGACCAACTACGAATATAG

mRNA sequence

ATGGAGTTCAGGAAGTTGACAGTTGATGCAGATTTTGCTACAAGTCTTTTTAATAGAAAGGAAGAGAAATGTTTTATCCCTCATCTTCTTCACTTTAGCGTCGTATCGTGTTCGGAAGATTCAACTAGTTCAATTGGATCATCGTCGTCGTCAAGCCTCTGTGACGACGATGCGTTATCGTCATTTTCATCTTCTTCTTCTTCGTCGTCTTTGTTATCTCAAAGAGAAGTTTGTGAGGAACAACAGCTGCTTTGTATCAAAAAAGGGTTGTCAAAATTTTATGAAGGGAAATCACGAACCTTCTCATCCTTATCCGACGTGAAATGCGTAGACGACTTAGCAAAGGGAGAGAATGATTATAGAAAGAAATACTCTCGAATTACTCCCAAGGCTACCATATCAAAGAAGCATGGAAGAGCCTCTCTTGCAACCTTAGTGTCTAAGATGGACATTTCACTTCGCCCCGAGTAAAGGGAAGCTCGAACTATTTATCGTTAGTGTCAAGTTTAATGGGCGGTTCTAAAATTTACTTGATACGGGAAAATGATGAAATGTTTTTTTCTTCTTTTGTTGATATACTTCGAGTATAAGATAGAATATGTGCAAGTTTTATAATTTTGATTTTGGGCTTTCGAGCTAAAGCTAGAGTAAAAGTATTTTATCTTAATGGGACCAACTACGAATATAG

Coding sequence (CDS)

ATGGAGTTCAGGAAGTTGACAGTTGATGCAGATTTTGCTACAAGTCTTTTTAATAGAAAGGAAGAGAAATGTTTTATCCCTCATCTTCTTCACTTTAGCGTCGTATCGTGTTCGGAAGATTCAACTAGTTCAATTGGATCATCGTCGTCGTCAAGCCTCTGTGACGACGATGCGTTATCGTCATTTTCATCTTCTTCTTCTTCGTCGTCTTTGTTATCTCAAAGAGAAGTTTGTGAGGAACAACAGCTGCTTTGTATCAAAAAAGGGTTGTCAAAATTTTATGAAGGGAAATCACGAACCTTCTCATCCTTATCCGACGTGAAATGCGTAGACGACTTAGCAAAGGGAGAGAATGATTATAGAAAGAAATACTCTCGAATTACTCCCAAGGCTACCATATCAAAGAAGCATGGAAGAGCCTCTCTTGCAACCTTAGTGTCTAAGATGGACATTTCACTTCGCCCCGAGTAA
BLAST of CmoCh05G006030 vs. TrEMBL
Match: A0A0A0LLW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G372880 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 58/91 (63.74%), Postives = 66/91 (72.53%), Query Frame = 1

Query: 1  MEFRKLTVDADFATSL----FNRKEEKCFIPHLLHFSVVSCSEDSTSSIGSSSSSSLCDD 60
          ME RKLTVDADFATS+    +NRKEEK  I H      V+ SE STSSIGS SSSS+CD+
Sbjct: 1  MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQF--TVAYSEGSTSSIGSISSSSVCDE 60

Query: 61 DALSSFSSS------SSSSSLLSQREVCEEQ 82
          DALSSFSSS      SS+SSLLSQ E+ E+Q
Sbjct: 61 DALSSFSSSSSCSSLSSTSSLLSQSELREQQ 89

BLAST of CmoCh05G006030 vs. TrEMBL
Match: W9R779_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005880 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 66/127 (51.97%), Postives = 81/127 (63.78%), Query Frame = 1

Query: 33  SVVSCSEDSTS-SIGSSSSSSLCDDDALSSFSSSSSSSSLLSQREVCEEQQLLCIKKGLS 92
           S    SE+STS SIGS+SSS +  DDA SS + SS  S  L +       QL  IKKGLS
Sbjct: 37  STTCSSEESTSCSIGSASSSDMLADDASSSSTCSSPESHDLHEFSEPMTSQLP-IKKGLS 96

Query: 93  KFYEGKSRTFSSLSDVKCVDDLAKGENDYRKKYSR---ITPKATISKKHGRASLAT-LVS 152
           K+Y GK+RTF+SLS+VKCV+DLAK E  + K+  R    +PKA ISKK+ R   AT LVS
Sbjct: 97  KYYNGKARTFTSLSEVKCVEDLAKKEIPFVKRGHRPSFQSPKAIISKKNTRRGSATSLVS 156

Query: 153 KMDISLR 155
              +S R
Sbjct: 157 SKTLSCR 162

BLAST of CmoCh05G006030 vs. TrEMBL
Match: A5BBL4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011279 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1

Query: 36  SCSEDSTSSIGSSSSSSLCDDDALSSFSSSSSSSSLLSQREVCEEQQLLC---IKKGLSK 95
           S  EDS +S GSS+SSS   DDA SS +S SS S   S   + E  +L+    IK+GLSK
Sbjct: 53  SSLEDSITSHGSSASSSDLVDDASSSSTSYSSVSPSHSSGPLYELSELMAQLPIKRGLSK 112

Query: 96  FYEGKSRTFSSLSDVKCVDDLAKGENDYRKKY--------------SRITPKATISKKHG 149
           +YEGKS++F+SLS V+ ++DLAK E+ YR+K               +   P+A ISKK G
Sbjct: 113 YYEGKSQSFTSLSSVRSIEDLAKKESPYRRKMKVCKSYGGGLDTHKAYTLPRAIISKKRG 172

BLAST of CmoCh05G006030 vs. TrEMBL
Match: F6HY89_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03340 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1

Query: 36  SCSEDSTSSIGSSSSSSLCDDDALSSFSSSSSSSSLLSQREVCEEQQLLC---IKKGLSK 95
           S  EDS +S GSS+SSS   DDA SS +S SS S   S   + E  +L+    IK+GLSK
Sbjct: 53  SSLEDSITSHGSSASSSDLVDDASSSSTSYSSVSPSHSSGPLYELAELMAQLPIKRGLSK 112

Query: 96  FYEGKSRTFSSLSDVKCVDDLAKGENDYRKKY--------------SRITPKATISKKHG 149
           +YEGKS++F+SLS V+ ++DLAK E+ YR+K               +   P+A ISKK G
Sbjct: 113 YYEGKSQSFTSLSSVRSIEDLAKKESPYRRKMKVCKSYGGGLDTHKAYTLPRAIISKKRG 172

BLAST of CmoCh05G006030 vs. TrEMBL
Match: I3SDR4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 1

Query: 33  SVVSCSEDSTSSIGSSSSSSLCDDDALSSFSSSSSSSSLLSQR----EVCEEQQLLCIKK 92
           S+ S SEDS +S+ SSSSS L D++  SS S+ S+SSS         E+ E    L +K+
Sbjct: 30  SIESVSEDSKNSVCSSSSSELADEEESSSASNLSTSSSSSHSNGPLYELSELMSHLPLKR 89

Query: 93  GLSKFYEGKSRTFSSLSDVKCVDDLAKGE--NDYRKKYS-------RITPKATISKKHGR 140
           GLSKFYEGK+++FSSLS V+ ++DL+K +   ++RKK           TPKATISKK  R
Sbjct: 90  GLSKFYEGKAQSFSSLSRVQSLEDLSKKDRPTNHRKKMKSCNSHRISYTPKATISKKSSR 149

BLAST of CmoCh05G006030 vs. TAIR10
Match: AT5G56550.1 (AT5G56550.1 oxidative stress 3)

HSP 1 Score: 52.4 bits (124), Expect = 3.0e-07
Identity = 53/130 (40.77%), Postives = 71/130 (54.62%), Query Frame = 1

Query: 36  SCSEDSTSSIGSSSS--SSLCDDDALSSFSSSSSSSSLLSQREVCEEQQLLCIKKGLSKF 95
           S  ED++SS   SSS  S   +DD     SSSSS+  L    ++ +    L IK+GLSKF
Sbjct: 38  SDEEDNSSSCSLSSSMCSDFTEDDDDDDVSSSSSNGPL---EDLSDLMSHLPIKRGLSKF 97

Query: 96  YEGKSRTFSSLSDVKCVDDLAK---GENDY--RKKYSRIT-------------PKATISK 146
           YEGKS++F+SL +VK ++DL K      +Y  ++K SR T             PKATISK
Sbjct: 98  YEGKSQSFTSLGNVKSLEDLMKRGFKSRNYGAKRKSSRSTGGILDQSYKRVFSPKATISK 157

BLAST of CmoCh05G006030 vs. TAIR10
Match: AT4G26288.1 (AT4G26288.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1

Query: 41  STSSIGSSSSSSLCDDDALSSFSSSSSSSSLLSQ------REVCEEQQLLCIKK-GLSKF 100
           S++ + SSSS S+C  D     SSSSSSSS  S        ++  +  ++ +KK GLSK+
Sbjct: 24  SSAKVSSSSSISMCSSDLTEDASSSSSSSSSSSNGPFDDLSDLISQLPIIQVKKGGLSKY 83

Query: 101 YEGKSRTFSSLSDVKCVDDLAKGENDYRKKYSR---ITPKATISKKHGRAS 142
           Y+GKS++F+SL++V  + DL K  +  +    R     PKATIS K  R S
Sbjct: 84  YKGKSQSFTSLANVTSLQDLVKRGSRTKSCCKRDYFYGPKATISMKATRTS 134

BLAST of CmoCh05G006030 vs. NCBI nr
Match: gi|778671960|ref|XP_011649716.1| (PREDICTED: uncharacterized protein LOC105434656 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.9e-40
Identity = 111/163 (68.10%), Postives = 128/163 (78.53%), Query Frame = 1

Query: 1   MEFRKLTVDADFATSL----FNRKEEKCFIPHLLHFSVVSCSEDSTSSIGSSSSSSLCDD 60
           ME RKLTVDADFATS+    +NRKEEK  I H      V+ SE STSSIGS SSSS+CD+
Sbjct: 1   MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQF--TVAYSEGSTSSIGSISSSSVCDE 60

Query: 61  DALSSFSSSSS------SSSLLSQREVCEEQQLLCIKKGLSKFYEGKSRTFSSLSDVKCV 120
           DALSSFSSSSS      +SSLLSQ E+ E+Q  L IKKGLSKFYEGKSRTFSSLSDVK +
Sbjct: 61  DALSSFSSSSSCSSLSSTSSLLSQSELREQQ--LPIKKGLSKFYEGKSRTFSSLSDVKSI 120

Query: 121 DDLAKGENDYRKKYSRITPKATISKKHGRASLATLVSKMDISL 154
           +DLAK ENDY+KK +RI+P+ATISKKHGR+S AT++SK D  L
Sbjct: 121 EDLAKRENDYKKKDTRISPRATISKKHGRSSFATMLSKADTLL 159

BLAST of CmoCh05G006030 vs. NCBI nr
Match: gi|659088447|ref|XP_008444986.1| (PREDICTED: suppressor protein SRP40-like [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 2.1e-39
Identity = 111/163 (68.10%), Postives = 124/163 (76.07%), Query Frame = 1

Query: 1   MEFRKLTVDADFATSL----FNRKEEKCFIPHLLHFSVVSCSEDSTSSIGSSSSSSLCDD 60
           ME RKLTVDADFATS+    +NRKEEK  I H      V+ SE STSSIGS SSSS+CDD
Sbjct: 1   MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQF--TVAYSEGSTSSIGSISSSSICDD 60

Query: 61  DALSSFSSSSSSSS---------LLSQREVCEEQQLLCIKKGLSKFYEGKSRTFSSLSDV 120
           D LSSFSSSSSSSS         LLSQ E+ E+Q  + IKKGLSKFYEGKSRTFSSLSDV
Sbjct: 61  DGLSSFSSSSSSSSSSSLSSTSSLLSQSELREQQ--VPIKKGLSKFYEGKSRTFSSLSDV 120

Query: 121 KCVDDLAKGENDYRKKYSRITPKATISKKHGRASLATLVSKMD 151
           K ++DLAK E D+RKK +RI+PKATISKKHGR+  ATLVSK D
Sbjct: 121 KSIEDLAKRETDHRKKDTRISPKATISKKHGRSYFATLVSKTD 159

BLAST of CmoCh05G006030 vs. NCBI nr
Match: gi|700207674|gb|KGN62793.1| (hypothetical protein Csa_2G372880 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 58/91 (63.74%), Postives = 66/91 (72.53%), Query Frame = 1

Query: 1  MEFRKLTVDADFATSL----FNRKEEKCFIPHLLHFSVVSCSEDSTSSIGSSSSSSLCDD 60
          ME RKLTVDADFATS+    +NRKEEK  I H      V+ SE STSSIGS SSSS+CD+
Sbjct: 1  MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQF--TVAYSEGSTSSIGSISSSSVCDE 60

Query: 61 DALSSFSSS------SSSSSLLSQREVCEEQ 82
          DALSSFSSS      SS+SSLLSQ E+ E+Q
Sbjct: 61 DALSSFSSSSSCSSLSSTSSLLSQSELREQQ 89

BLAST of CmoCh05G006030 vs. NCBI nr
Match: gi|703095142|ref|XP_010095455.1| (hypothetical protein L484_005880 [Morus notabilis])

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 66/127 (51.97%), Postives = 81/127 (63.78%), Query Frame = 1

Query: 33  SVVSCSEDSTS-SIGSSSSSSLCDDDALSSFSSSSSSSSLLSQREVCEEQQLLCIKKGLS 92
           S    SE+STS SIGS+SSS +  DDA SS + SS  S  L +       QL  IKKGLS
Sbjct: 37  STTCSSEESTSCSIGSASSSDMLADDASSSSTCSSPESHDLHEFSEPMTSQLP-IKKGLS 96

Query: 93  KFYEGKSRTFSSLSDVKCVDDLAKGENDYRKKYSR---ITPKATISKKHGRASLAT-LVS 152
           K+Y GK+RTF+SLS+VKCV+DLAK E  + K+  R    +PKA ISKK+ R   AT LVS
Sbjct: 97  KYYNGKARTFTSLSEVKCVEDLAKKEIPFVKRGHRPSFQSPKAIISKKNTRRGSATSLVS 156

Query: 153 KMDISLR 155
              +S R
Sbjct: 157 SKTLSCR 162

BLAST of CmoCh05G006030 vs. NCBI nr
Match: gi|502166373|ref|XP_004513873.1| (PREDICTED: uncharacterized protein LOC101489917 [Cicer arietinum])

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1

Query: 43  SSIGSSSSSSLCDDDALSSFSSSSSSSSLLSQREVCEEQQLLCIKKGLSKFYEGKSRTFS 102
           S I S S SSL    +  S SSSSSSSS+ S+ +  E    L IK+GLSK+Y GKSRTF 
Sbjct: 49  SDISSLSLSSLSWLSSPPSPSSSSSSSSIESKCDFSEFLVQLHIKRGLSKYYRGKSRTFR 108

Query: 103 SLSDVKCVDDLAKGENDYRKK--YSRI-TPKATISKKHGRASLATLVSK 149
           SLSDV+C++DL+K E  + KK  YS   +PK +ISKK GR+   +L+SK
Sbjct: 109 SLSDVRCLEDLSKKEIPHHKKKAYSPFQSPKTSISKKAGRSCFTSLLSK 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LLW5_CUCSA1.0e-1163.74Uncharacterized protein OS=Cucumis sativus GN=Csa_2G372880 PE=4 SV=1[more]
W9R779_9ROSA1.3e-1151.97Uncharacterized protein OS=Morus notabilis GN=L484_005880 PE=4 SV=1[more]
A5BBL4_VITVI1.6e-0943.85Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011279 PE=4 SV=1[more]
F6HY89_VITVI2.1e-0943.85Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03340 PE=4 SV=... [more]
I3SDR4_LOTJA2.7e-0946.67Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT5G56550.13.0e-0740.77 oxidative stress 3[more]
AT4G26288.11.1e-0639.64 FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
gi|778671960|ref|XP_011649716.1|1.9e-4068.10PREDICTED: uncharacterized protein LOC105434656 [Cucumis sativus][more]
gi|659088447|ref|XP_008444986.1|2.1e-3968.10PREDICTED: suppressor protein SRP40-like [Cucumis melo][more]
gi|700207674|gb|KGN62793.1|1.4e-1163.74hypothetical protein Csa_2G372880 [Cucumis sativus][more]
gi|703095142|ref|XP_010095455.1|1.9e-1151.97hypothetical protein L484_005880 [Morus notabilis][more]
gi|502166373|ref|XP_004513873.1|3.5e-1052.29PREDICTED: uncharacterized protein LOC101489917 [Cicer arietinum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G006030.1CmoCh05G006030.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33172FAMILY NOT NAMEDcoord: 36..123
score: 1.7

The following gene(s) are paralogous to this gene:

None