MELO3C011125 (gene) Melon (DHL92) v3.5.1

NameMELO3C011125
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionOxidative stress 3, putative isoform 1
Locationchr3 : 26221891 .. 26222825 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGTAATCTGCTAAAACTCAAGAAAGAATTGAAAGGACAGGAATTCACCCATTATTATTCCCTCTTCTCTTCGGGGAAAGTCATGGAGTCTAGGAAGTTGACAGTTGATGCTGATTTTGCTACAAGTGTTTTATGTGATGATTGGAATAGAAAGGAAGAAAAGTCCATTATTTCTCATTTCCAATTTACCGTAGCATATTCAGAAGGTTCAACCAGTTCTATTGGTTCAATATCGTCATCGAGCATTTGTGACGACGATGGATTATCGTCATTTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCGTCTTTGTCCTCGACTTCATCTTTGTTATCCCAAAGTGAACTTCGTGAGCAACAAGTTCCTATCAAGTAAGTTAAAATGTAGAGACCCCCCAAATTTTCTTTATACTATGCTTAAATGGCATCTAATTCATTTGTTTGTTATGCAGAAAAGGGTTGTCAAAATTTTATGAAGGGAAATCGCGAACCTTTTCATCTTTATCAGATGTGAAATCCATAGAAGACTTAGCAAAGAGAGAAACTGATCACAGAAAGAAAGACACTCGAATTAGTCCTAAGGCTACTATTTCAAAGAAGCATGGAAGGAGCTATTTTGCAACCTTGGTGTCTAAGACAGACACTTTGAGTTGAGATATTTCATATTCAACTAAAATATATCCCACATGCCTCCTTTGAATACATTGAAGGTGTAGCTATTTTGACTAAAATGAAAATAATTTAGTTAAAAAAAAAATTGAAGAAAAATTTGTGAATTTTACTAAGAGTATCCATTGATTAATTTGAATTTGATGTGATACCAAATTTTGATTGAAAAAAATTGTCCCTTTATGGAGGCTTTTATCTTGCCTTTTTTGTTAAAGTTAGTAAAAACTAAGTATAAGATGAAAATTGCAATAATTATATCAACTTTATGG

mRNA sequence

GAGTAATCTGCTAAAACTCAAGAAAGAATTGAAAGGACAGGAATTCACCCATTATTATTCCCTCTTCTCTTCGGGGAAAGTCATGGAGTCTAGGAAGTTGACAGTTGATGCTGATTTTGCTACAAGTGTTTTATGTGATGATTGGAATAGAAAGGAAGAAAAGTCCATTATTTCTCATTTCCAATTTACCGTAGCATATTCAGAAGGTTCAACCAGTTCTATTGGTTCAATATCGTCATCGAGCATTTGTGACGACGATGGATTATCGTCATTTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCGTCTTTGTCCTCGACTTCATCTTTGTTATCCCAAAGTGAACTTCGTGAGCAACAAGTTCCTATCAAAAAAGGGTTGTCAAAATTTTATGAAGGGAAATCGCGAACCTTTTCATCTTTATCAGATGTGAAATCCATAGAAGACTTAGCAAAGAGAGAAACTGATCACAGAAAGAAAGACACTCGAATTAGTCCTAAGGCTACTATTTCAAAGAAGCATGGAAGGAGCTATTTTGCAACCTTGGTGTCTAAGACAGACACTTTGAGTTGAGATATTTCATATTCAACTAAAATATATCCCACATGCCTCCTTTGAATACATTGAAGGTGTAGCTATTTTGACTAAAATGAAAATAATTTAGTTAAAAAAAAAATTGAAGAAAAATTTGTGAATTTTACTAAGAGTATCCATTGATTAATTTGAATTTGATGTGATACCAAATTTTGATTGAAAAAAATTGTCCCTTTATGGAGGCTTTTATCTTGCCTTTTTTGTTAAAGTTAGTAAAAACTAAGTATAAGATGAAAATTGCAATAATTATATCAACTTTATGG

Coding sequence (CDS)

ATGGAGTCTAGGAAGTTGACAGTTGATGCTGATTTTGCTACAAGTGTTTTATGTGATGATTGGAATAGAAAGGAAGAAAAGTCCATTATTTCTCATTTCCAATTTACCGTAGCATATTCAGAAGGTTCAACCAGTTCTATTGGTTCAATATCGTCATCGAGCATTTGTGACGACGATGGATTATCGTCATTTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCGTCTTTGTCCTCGACTTCATCTTTGTTATCCCAAAGTGAACTTCGTGAGCAACAAGTTCCTATCAAAAAAGGGTTGTCAAAATTTTATGAAGGGAAATCGCGAACCTTTTCATCTTTATCAGATGTGAAATCCATAGAAGACTTAGCAAAGAGAGAAACTGATCACAGAAAGAAAGACACTCGAATTAGTCCTAAGGCTACTATTTCAAAGAAGCATGGAAGGAGCTATTTTGCAACCTTGGTGTCTAAGACAGACACTTTGAGTTGA

Protein sequence

MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSICDDDGLSSFSSSSSSSSSSSLSSTSSLLSQSELREQQVPIKKGLSKFYEGKSRTFSSLSDVKSIEDLAKRETDHRKKDTRISPKATISKKHGRSYFATLVSKTDTLS*
BLAST of MELO3C011125 vs. TAIR10
Match: AT4G26288.1 (AT4G26288.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 79.0 bits (193), Expect = 3.1e-15
Identity = 56/133 (42.11%), Postives = 77/133 (57.89%), Query Frame = 1

Query: 24  KEEKSIISHFQFTVAYSEGSTSSIGSISSSSICDDDGLSSFSSSSSSSSSSS---LSSTS 83
           KEE+ +I           GS++ + S SS S+C  D     SSSSSSSSSSS       S
Sbjct: 13  KEEEGVIG--------VSGSSAKVSSSSSISMCSSDLTEDASSSSSSSSSSSNGPFDDLS 72

Query: 84  SLLSQSELREQQVPIKK-GLSKFYEGKSRTFSSLSDVKSIEDLAKRETDHR---KKDTRI 143
            L+SQ  +    + +KK GLSK+Y+GKS++F+SL++V S++DL KR +  +   K+D   
Sbjct: 73  DLISQLPI----IQVKKGGLSKYYKGKSQSFTSLANVTSLQDLVKRGSRTKSCCKRDYFY 132

Query: 144 SPKATISKKHGRS 150
            PKATIS K  R+
Sbjct: 133 GPKATISMKATRT 133

BLAST of MELO3C011125 vs. TAIR10
Match: AT5G56550.1 (AT5G56550.1 oxidative stress 3)

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-15
Identity = 58/144 (40.28%), Postives = 75/144 (52.08%), Query Frame = 1

Query: 24  KEEKSIISHFQFTVAYSEGSTSSIGSISSSSICDDDGLSSFSSSSSSSSSSSLSSTSSLL 83
           +EE+ I+     T +  E ++SS  S+SSS   D          SSSSS+  L   S L+
Sbjct: 24  QEEEDIVQEVSTTFSDEEDNSSSC-SLSSSMCSDFTEDDDDDDVSSSSSNGPLEDLSDLM 83

Query: 84  SQSELREQQVPIKKGLSKFYEGKSRTFSSLSDVKSIEDLAKRETDHR-----KKDTR--- 143
           S        +PIK+GLSKFYEGKS++F+SL +VKS+EDL KR    R     +K +R   
Sbjct: 84  SH-------LPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMKRGFKSRNYGAKRKSSRSTG 143

Query: 144 ----------ISPKATISKKHGRS 150
                      SPKATISKK  R+
Sbjct: 144 GILDQSYKRVFSPKATISKKPNRT 159

BLAST of MELO3C011125 vs. TAIR10
Match: AT5G21940.1 (AT5G21940.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-09
Identity = 43/144 (29.86%), Postives = 69/144 (47.92%), Query Frame = 1

Query: 26  EKSIISHFQFTVAYSEGSTSSIGSISSSSIC---DDDGLSSFSSSSSSSSSSSLSST-SS 85
           ++S + H  F+ + S   +SS  S S+SS      DDG  S       +  + + S    
Sbjct: 14  DESPVMHTWFSPSPSPSDSSSSPSSSASSSIGRNSDDGEKSSEDGGDDAGENEVESPYKG 73

Query: 86  LLSQSELREQQVPIKKGLSKFYEGKSRTF--------SSLSDVKSIEDLAKRETDHRKK- 145
            L   E  EQ +P++KG+SK+Y GKS++F        S+L+   S++DLAK E  + ++ 
Sbjct: 74  PLEMMESLEQVLPVRKGISKYYSGKSKSFTNLTAEAASALTSSSSMKDLAKPENPYSRRR 133

Query: 146 ----------DTRISPKATISKKH 147
                     + + +P+  ISKKH
Sbjct: 134 RNLLCHQIWENNKTTPRGGISKKH 157

BLAST of MELO3C011125 vs. TAIR10
Match: AT3G43850.1 (AT3G43850.1 unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-08
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 1

Query: 53  SSICDDDGLSSFSSSSSSSSSSSLSSTSSLLSQSELREQQVPIKKGLSKFYEGKSRTFSS 112
           SS    D +   S       +   SS +  L   E  E+ +PIK+ +SKFY+GKS++F S
Sbjct: 22  SSSTSSDSIGENSDDDEGGENEIESSYNGPLDMMESLEEALPIKRAISKFYKGKSKSFMS 81

Query: 113 LSDVKS--IEDLAKRETDHRKK-----DTRISPKATISKKHGRSYFATLVSKTDTLS 163
           LS+  S  ++DL K E  + ++       RI  +  ISKK  +S  A    + D+ S
Sbjct: 82  LSETSSLPVKDLTKPENLYSRRRRNLLSHRICSRGGISKKPFKSVLAMSQREGDSSS 138

BLAST of MELO3C011125 vs. TAIR10
Match: AT4G31510.1 (AT4G31510.1 unknown protein)

HSP 1 Score: 51.6 bits (122), Expect = 5.3e-07
Identity = 32/90 (35.56%), Postives = 45/90 (50.00%), Query Frame = 1

Query: 43  STSSIGSISSSSICDDDGLSSFSSSSSSSSSSSLSSTSSLLSQSELREQQVPIKKGLSKF 102
           S+SS+G  S +   +DD +SS      +S SSSL             E  +PIK+GLS  
Sbjct: 43  SSSSVGETSENEEDEDDAVSSSQGRWLNSFSSSL-------------EDSLPIKRGLSNH 102

Query: 103 YEGKSRTFSSLSDVKSIEDLAKRETDHRKK 133
           Y GKS++F +L +  +  DL K E+   K+
Sbjct: 103 YIGKSKSFGNLMEASNTNDLVKVESPLNKR 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT4G26288.13.1e-1542.11 FUNCTIONS IN: molecular_function unknown[more]
AT5G56550.15.3e-1540.28 oxidative stress 3[more]
AT5G21940.11.9e-0929.86 unknown protein[more]
AT3G43850.13.7e-0832.48 unknown protein[more]
AT4G31510.15.3e-0735.56 unknown protein[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C011125T1MELO3C011125T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33172FAMILY NOT NAMEDcoord: 29..132
score: 1.1

The following gene(s) are paralogous to this gene:

None