Csa2G372880 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G372880
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 18619804 .. 18620105 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTAGGAAGTTGACAGTTGATGCGGATTTTGCTACAAGTGTTTTATGTGATGACTGGAATAGAAAGGAAGAAAAGTCCATTATCTCTCATTTCCAATTTACTGTAGCATATTCAGAAGGTTCAACCAGTTCGATTGGATCAATATCGTCATCGAGCGTTTGTGACGAAGATGCATTATCGTCATTCTCTTCTTCTTCTTCTTGTTCGTCTTTGTCCTCGACTTCATCTTTGTTGTCCCAAAGTGAACTTCGTGAGCAACAACTTCCTATCAAGTAAGTTAAAGTGTCAAGTCCCCC

mRNA sequence

ATGGAGTCTAGGAAGTTGACAGTTGATGCGGATTTTGCTACAAGTGTTTTATGTGATGACTGGAATAGAAAGGAAGAAAAGTCCATTATCTCTCATTTCCAATTTACTGTAGCATATTCAGAAGGTTCAACCAGTTCGATTGGATCAATATCGTCATCGAGCGTTTGTGACGAAGATGCATTATCGTCATTCTCTTCTTCTTCTTCTTGTTCGTCTTTGTCCTCGACTTCATCTTTGTTGTCCCAAAGTGAACTTCGTGAGCAACAACTTCCTATCAAGTAA

Coding sequence (CDS)

ATGGAGTCTAGGAAGTTGACAGTTGATGCGGATTTTGCTACAAGTGTTTTATGTGATGACTGGAATAGAAAGGAAGAAAAGTCCATTATCTCTCATTTCCAATTTACTGTAGCATATTCAGAAGGTTCAACCAGTTCGATTGGATCAATATCGTCATCGAGCGTTTGTGACGAAGATGCATTATCGTCATTCTCTTCTTCTTCTTCTTGTTCGTCTTTGTCCTCGACTTCATCTTTGTTGTCCCAAAGTGAACTTCGTGAGCAACAACTTCCTATCAAGTAA

Protein sequence

MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSVCDEDALSSFSSSSSCSSLSSTSSLLSQSELREQQLPIK*

Homology

[Close]

BLAST of Csa2G372880 vs. TrEMBL
Match: A0A0A0LLW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G372880 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSVCDEDA 60
          MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSVCDEDA
Sbjct: 1  MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSVCDEDA 60

Query: 61 LSSFSSSSSCSSLSSTSSLLSQSELREQQLPIK 94
          LSSFSSSSSCSSLSSTSSLLSQSELREQQLPIK
Sbjct: 61 LSSFSSSSSCSSLSSTSSLLSQSELREQQLPIK 93

[Close]

BLAST of Csa2G372880 vs. NCBI nr
Match: gi|778671960|ref|XP_011649716.1| (PREDICTED: uncharacterized protein LOC105434656 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSVCDEDA 60
          MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSVCDEDA
Sbjct: 1  MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSVCDEDA 60

Query: 61 LSSFSSSSSCSSLSSTSSLLSQSELREQQLPIK 94
          LSSFSSSSSCSSLSSTSSLLSQSELREQQLPIK
Sbjct: 61 LSSFSSSSSCSSLSSTSSLLSQSELREQQLPIK 93

[Close]

BLAST of Csa2G372880 vs. NCBI nr
Match: gi|700207674|gb|KGN62793.1| (hypothetical protein Csa_2G372880 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSVCDEDA 60
          MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSVCDEDA
Sbjct: 1  MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSVCDEDA 60

Query: 61 LSSFSSSSSCSSLSSTSSLLSQSELREQQLPIK 94
          LSSFSSSSSCSSLSSTSSLLSQSELREQQLPIK
Sbjct: 61 LSSFSSSSSCSSLSSTSSLLSQSELREQQLPIK 93

The following BLAST results are available for this feature:

BLAST of Csa2G372880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLW5_CUCSA	1.9e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G372880 PE=4 SV=1	[more]

BLAST of Csa2G372880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778671960\|ref\|XP_011649716.1\|	2.8e-42	100.00	PREDICTED: uncharacterized protein LOC105434656 [Cucumis sativus]	[more]
gi\|700207674\|gb\|KGN62793.1\|	2.8e-42	100.00	hypothetical protein Csa_2G372880 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G372880.1	Csa2G372880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G372880	Cla022193	Watermelon (97103) v1	cuwmB107
Csa2G372880	MELO3C011125	Melon (DHL92) v3.5.1	cumeB117
Csa2G372880	ClCG08G012070	Watermelon (Charleston Gray)	cuwcgB165
Csa2G372880	Lsi08G010640	Bottle gourd (USVL1VR-Ls)	culsiB140
Csa2G372880	MELO3C011125.2	Melon (DHL92) v3.6.1	cumedB114
Csa2G372880	Cla97C08G155200	Watermelon (97103) v2	cuwmbB159
Csa2G372880	Bhi04G000717	Wax gourd	cuwgoB165
Csa2G372880	CSPI02G22030	Wild cucumber (PI 183967)	cpicuB065
Csa2G372880	Cucsa.161020	Cucumber (Gy14) v1	cgycuB233
Csa2G372880	CsGy2G021770	Cucumber (Gy14) v2	cgybcuB057

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G372880	Cucumber (Gy14) v1	cgycuB445
Csa2G372880	Cucurbita maxima (Rimu)	cmacuB164
Csa2G372880	Cucurbita maxima (Rimu)	cmacuB785
Csa2G372880	Cucurbita moschata (Rifu)	cmocuB149
Csa2G372880	Cucurbita moschata (Rifu)	cmocuB778
Csa2G372880	Melon (DHL92) v3.5.1	cumeB130
Csa2G372880	Watermelon (Charleston Gray)	cuwcgB102
Csa2G372880	Cucurbita pepo (Zucchini)	cpecuB097
Csa2G372880	Cucurbita pepo (Zucchini)	cpecuB810
Csa2G372880	Bottle gourd (USVL1VR-Ls)	culsiB121
Csa2G372880	Silver-seed gourd	carcuB0059
Csa2G372880	Watermelon (97103) v2	cuwmbB107