Cla022193 (gene) Watermelon (97103) v1

NameCla022193
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCold induced protein-like (AHRD V1 *--- Q94JH8_ORYSJ)
LocationChr8 : 21410341 .. 21410935 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCTAGGAAGTTGACAGTTGATGCAGATTTTTCTACAAGTGTTTTATGTGATCATTGGAATATAAAGGAAGAAAAATCTATTCTCTCTCATTCTCAATTTAGCGTATTGTGTTCAGAAGGTTCAACTAGTTCTATTGGATCAATATCGTCATCGAGCGTTTGTGACGACGACGCATTATCGTCATTCTCACCTTCTTCTTCTTTTTCTTCATTGTCTTTGTCCTCAACTTCATCTTTGTTATCTCAAAGTGAACTTCATGAGCAACAACTTCCTATCAAGTAAGTTAAAATGTAGAGCTAGAACCCCCAAATTTTCTTTATACTATTTCAGTTTCTAAGCTTTTAAGCCTTAAATTACTGGTATCTGAGCCGTTTGCTTGTTATGCAGAAAAGGGTTGTCAAAATTTTATGAAGGAAAATCACGAACCTTTTCATCATTATCAGACGTGAAATCCATAGAAGACTTAGCAAAGAAAGAGAAGAACTACAAAAAGAAAGACTCTCGAATTAGTCCTAAGGCTGCTATTTCAAAGAAGCATGGAAGGAGCTGTTTTGCAAACTTGGTGTCTAAGGCAGACACTTTACTTTGA

mRNA sequence

ATGAAGTCTAGGAAGTTGACAGTTGATGCAGATTTTTCTACAAGTGTTTTATGTGATCATTGGAATATAAAGGAAGAAAAATCTATTCTCTCTCATTCTCAATTTAGCGTATTGTGTTCAGAAGGTTCAACTAGTTCTATTGGATCAATATCGTCATCGAGCGTTTGTGACGACGACGCATTATCGTCATTCTCACCTTCTTCTTCTTTTTCTTCATTGTCTTTGTCCTCAACTTCATCTTTGTTATCTCAAAGTGAACTTCATGAGCAACAACTTCCTATCAAAAAAGGGTTGTCAAAATTTTATGAAGGAAAATCACGAACCTTTTCATCATTATCAGACGTGAAATCCATAGAAGACTTAGCAAAGAAAGAGAAGAACTACAAAAAGAAAGACTCTCGAATTAGTCCTAAGGCTGCTATTTCAAAGAAGCATGGAAGGAGCTGTTTTGCAAACTTGGTGTCTAAGGCAGACACTTTACTTTGA

Coding sequence (CDS)

ATGAAGTCTAGGAAGTTGACAGTTGATGCAGATTTTTCTACAAGTGTTTTATGTGATCATTGGAATATAAAGGAAGAAAAATCTATTCTCTCTCATTCTCAATTTAGCGTATTGTGTTCAGAAGGTTCAACTAGTTCTATTGGATCAATATCGTCATCGAGCGTTTGTGACGACGACGCATTATCGTCATTCTCACCTTCTTCTTCTTTTTCTTCATTGTCTTTGTCCTCAACTTCATCTTTGTTATCTCAAAGTGAACTTCATGAGCAACAACTTCCTATCAAAAAAGGGTTGTCAAAATTTTATGAAGGAAAATCACGAACCTTTTCATCATTATCAGACGTGAAATCCATAGAAGACTTAGCAAAGAAAGAGAAGAACTACAAAAAGAAAGACTCTCGAATTAGTCCTAAGGCTGCTATTTCAAAGAAGCATGGAAGGAGCTGTTTTGCAAACTTGGTGTCTAAGGCAGACACTTTACTTTGA

Protein sequence

MKSRKLTVDADFSTSVLCDHWNIKEEKSILSHSQFSVLCSEGSTSSIGSISSSSVCDDDALSSFSPSSSFSSLSLSSTSSLLSQSELHEQQLPIKKGLSKFYEGKSRTFSSLSDVKSIEDLAKKEKNYKKKDSRISPKAAISKKHGRSCFANLVSKADTLL
BLAST of Cla022193 vs. TrEMBL
Match: A0A0A0LLW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G372880 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.0e-32
Identity = 80/95 (84.21%), Postives = 85/95 (89.47%), Query Frame = 1

Query: 1  MKSRKLTVDADFSTSVLCDHWNIKEEKSILSHSQFSVLCSEGSTSSIGSISSSSVCDDDA 60
          M+SRKLTVDADF+TSVLCD WN KEEKSI+SH QF+V  SEGSTSSIGSISSSSVCD+DA
Sbjct: 1  MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSVCDEDA 60

Query: 61 LSSFSPSSSFSSLSLSSTSSLLSQSELHEQQLPIK 96
          LSSFS SSS S  SLSSTSSLLSQSEL EQQLPIK
Sbjct: 61 LSSFSSSSSCS--SLSSTSSLLSQSELREQQLPIK 93

BLAST of Cla022193 vs. TrEMBL
Match: W9R779_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005880 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.6e-20
Identity = 73/154 (47.40%), Postives = 93/154 (60.39%), Query Frame = 1

Query: 11  DFSTSVLCDHWNIKEEKSILSHSQFSVLCSEGSTS-SIGSISSSSVCDDDALSSFSPSSS 70
           DF+  ++ D+WNIKE+ S     + +   SE STS SIGS SSS +  DDA SS      
Sbjct: 14  DFNLKII-DYWNIKEDCSANFQFKSTTCSSEESTSCSIGSASSSDMLADDASSS------ 73

Query: 71  FSSLSLSSTSSLLSQSELHEQQLPIKKGLSKFYEGKSRTFSSLSDVKSIEDLAKKEKNYK 130
            S+ S   +  L   SE    QLPIKKGLSK+Y GK+RTF+SLS+VK +EDLAKKE  + 
Sbjct: 74  -STCSSPESHDLHEFSEPMTSQLPIKKGLSKYYNGKARTFTSLSEVKCVEDLAKKEIPFV 133

Query: 131 KKDSR---ISPKAAISKKHGRSCFANLVSKADTL 161
           K+  R    SPKA ISKK+ R   A  +  + TL
Sbjct: 134 KRGHRPSFQSPKAIISKKNTRRGSATSLVSSKTL 159

BLAST of Cla022193 vs. TrEMBL
Match: A5BBL4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011279 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-16
Identity = 66/156 (42.31%), Postives = 90/156 (57.69%), Query Frame = 1

Query: 19  DHWNIKEEKSILSHSQFSVLCS----EGSTSSIGSISSSSVCDDDALSSFSPSSSFSSLS 78
           D+W I E       S ++   S    E S +S GS +SSS   DDA SS   S+S+SS+S
Sbjct: 30  DNWVIMEADGEDDDSNYNPRSSSSSLEDSITSHGSSASSSDLVDDASSS---STSYSSVS 89

Query: 79  LSSTSSLLSQSELHEQQLPIKKGLSKFYEGKSRTFSSLSDVKSIEDLAKKEKNYKKK--- 138
            S +S  L +      QLPIK+GLSK+YEGKS++F+SLS V+SIEDLAKKE  Y++K   
Sbjct: 90  PSHSSGPLYELSELMAQLPIKRGLSKYYEGKSQSFTSLSSVRSIEDLAKKESPYRRKMKV 149

Query: 139 -----------DSRISPKAAISKKHGRSCFANLVSK 157
                       +   P+A ISKK G +   +L+S+
Sbjct: 150 CKSYGGGLDTHKAYTLPRAIISKKRGSAASLSLLSR 182

BLAST of Cla022193 vs. TrEMBL
Match: F6HY89_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03340 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.0e-16
Identity = 66/156 (42.31%), Postives = 90/156 (57.69%), Query Frame = 1

Query: 19  DHWNIKEEKSILSHSQFSVLCS----EGSTSSIGSISSSSVCDDDALSSFSPSSSFSSLS 78
           D+W I E       S ++   S    E S +S GS +SSS   DDA SS   S+S+SS+S
Sbjct: 30  DNWVIMEADGEDDDSNYNPRSSSSSLEDSITSHGSSASSSDLVDDASSS---STSYSSVS 89

Query: 79  LSSTSSLLSQSELHEQQLPIKKGLSKFYEGKSRTFSSLSDVKSIEDLAKKEKNYKKK--- 138
            S +S  L +      QLPIK+GLSK+YEGKS++F+SLS V+SIEDLAKKE  Y++K   
Sbjct: 90  PSHSSGPLYELAELMAQLPIKRGLSKYYEGKSQSFTSLSSVRSIEDLAKKESPYRRKMKV 149

Query: 139 -----------DSRISPKAAISKKHGRSCFANLVSK 157
                       +   P+A ISKK G +   +L+S+
Sbjct: 150 CKSYGGGLDTHKAYTLPRAIISKKRGSAASLSLLSR 182

BLAST of Cla022193 vs. TrEMBL
Match: A0A151T2Y6_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_015877 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.8e-15
Identity = 66/154 (42.86%), Postives = 86/154 (55.84%), Query Frame = 1

Query: 23  IKEEKSILSHSQFSVLCSEGSTSSIGSISSSSVCDDDALSSFSPSSSFSSLSLSSTSSLL 82
           IKE+    + S    L SE S  S+ S SSSS   +DA SS S SS+ S+  L   S L+
Sbjct: 12  IKEDGEDSNDSSSIGLFSEDSMDSLRSSSSSSELTEDASSSASSSSTHSNGPLYEFSDLM 71

Query: 83  SQSELHEQQLPIKKGLSKFYEGKSRTFSSLSDVKSIEDLAKKEKNYKKK----------- 142
           +        LPIK+GLS FY+GK+++F+SL+ V+SIEDL KK   YKK+           
Sbjct: 72  NH-------LPIKRGLSMFYQGKAQSFTSLARVESIEDLPKKGTPYKKRMKSCKSFGGGL 131

Query: 143 DSR----ISPKAAISKKHGRSCFANLVSKADTLL 162
           DS      SPKA ISKK  R  FA ++SK  + L
Sbjct: 132 DSHHRILYSPKATISKKASRGSFAFVLSKRGSFL 158

BLAST of Cla022193 vs. NCBI nr
Match: gi|778671960|ref|XP_011649716.1| (PREDICTED: uncharacterized protein LOC105434656 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 6.8e-65
Identity = 136/161 (84.47%), Postives = 147/161 (91.30%), Query Frame = 1

Query: 1   MKSRKLTVDADFSTSVLCDHWNIKEEKSILSHSQFSVLCSEGSTSSIGSISSSSVCDDDA 60
           M+SRKLTVDADF+TSVLCD WN KEEKSI+SH QF+V  SEGSTSSIGSISSSSVCD+DA
Sbjct: 1   MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSVCDEDA 60

Query: 61  LSSFSPSSSFSSLSLSSTSSLLSQSELHEQQLPIKKGLSKFYEGKSRTFSSLSDVKSIED 120
           LSSFS SSS SSLS  STSSLLSQSEL EQQLPIKKGLSKFYEGKSRTFSSLSDVKSIED
Sbjct: 61  LSSFSSSSSCSSLS--STSSLLSQSELREQQLPIKKGLSKFYEGKSRTFSSLSDVKSIED 120

Query: 121 LAKKEKNYKKKDSRISPKAAISKKHGRSCFANLVSKADTLL 162
           LAK+E +YKKKD+RISP+A ISKKHGRS FA ++SKADTLL
Sbjct: 121 LAKRENDYKKKDTRISPRATISKKHGRSSFATMLSKADTLL 159

BLAST of Cla022193 vs. NCBI nr
Match: gi|659088447|ref|XP_008444986.1| (PREDICTED: suppressor protein SRP40-like [Cucumis melo])

HSP 1 Score: 251.1 bits (640), Expect = 1.3e-63
Identity = 134/161 (83.23%), Postives = 145/161 (90.06%), Query Frame = 1

Query: 1   MKSRKLTVDADFSTSVLCDHWNIKEEKSILSHSQFSVLCSEGSTSSIGSISSSSVCDDDA 60
           M+SRKLTVDADF+TSVLCD WN KEEKSI+SH QF+V  SEGSTSSIGSISSSS+CDDD 
Sbjct: 1   MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSICDDDG 60

Query: 61  LSSFSPSSSFSSLS-LSSTSSLLSQSELHEQQLPIKKGLSKFYEGKSRTFSSLSDVKSIE 120
           LSSFS SSS SS S LSSTSSLLSQSEL EQQ+PIKKGLSKFYEGKSRTFSSLSDVKSIE
Sbjct: 61  LSSFSSSSSSSSSSSLSSTSSLLSQSELREQQVPIKKGLSKFYEGKSRTFSSLSDVKSIE 120

Query: 121 DLAKKEKNYKKKDSRISPKAAISKKHGRSCFANLVSKADTL 161
           DLAK+E +++KKD+RISPKA ISKKHGRS FA LVSK DTL
Sbjct: 121 DLAKRETDHRKKDTRISPKATISKKHGRSYFATLVSKTDTL 161

BLAST of Cla022193 vs. NCBI nr
Match: gi|700207674|gb|KGN62793.1| (hypothetical protein Csa_2G372880 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 5.8e-32
Identity = 80/95 (84.21%), Postives = 85/95 (89.47%), Query Frame = 1

Query: 1  MKSRKLTVDADFSTSVLCDHWNIKEEKSILSHSQFSVLCSEGSTSSIGSISSSSVCDDDA 60
          M+SRKLTVDADF+TSVLCD WN KEEKSI+SH QF+V  SEGSTSSIGSISSSSVCD+DA
Sbjct: 1  MESRKLTVDADFATSVLCDDWNRKEEKSIISHFQFTVAYSEGSTSSIGSISSSSVCDEDA 60

Query: 61 LSSFSPSSSFSSLSLSSTSSLLSQSELHEQQLPIK 96
          LSSFS SSS S  SLSSTSSLLSQSEL EQQLPIK
Sbjct: 61 LSSFSSSSSCS--SLSSTSSLLSQSELREQQLPIK 93

BLAST of Cla022193 vs. NCBI nr
Match: gi|703154172|ref|XP_010110872.1| (hypothetical protein L484_006987 [Morus notabilis])

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 65/152 (42.76%), Postives = 85/152 (55.92%), Query Frame = 1

Query: 19  DHWNIKEEKSILSHSQFSVLCSEGSTSSIGSISSSSVCD--DDALSSFSPSSSFSSLSLS 78
           D+ NI + +S+ S SQ          SSI SI+SSS  D  +DA SS S S S SS S S
Sbjct: 36  DNINICDSRSMESSSQ--------ENSSINSIASSSSSDLVEDASSSNSSSKSCSSSSSS 95

Query: 79  ST--SSLLSQSELHEQQ-----LPIKKGLSKFYEGKSRTFSSLSDVKSIEDLAKKEKNYK 138
           S+  SS  +   L+E       LP+++GLSKFY+GKS++F+SL+ VKS+EDL KK   Y+
Sbjct: 96  SSPFSSSSNNGPLYELSELMVHLPLRRGLSKFYQGKSQSFTSLASVKSLEDLPKKVAPYR 155

Query: 139 KK--------------DSRISPKAAISKKHGR 148
           KK              +    PKA ISKK  R
Sbjct: 156 KKLMKPCKSFGGGLEGNKLHYPKAIISKKSSR 179

BLAST of Cla022193 vs. NCBI nr
Match: gi|951041211|ref|XP_014517882.1| (PREDICTED: uncharacterized serine-rich protein C215.13-like [Vigna radiata var. radiata])

HSP 1 Score: 79.0 bits (193), Expect = 8.7e-12
Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 1

Query: 20  HWNIKEEKSILSHSQFSVLCSEGSTSSIGSISSSSVCDD----DALSSFSPSSSFSSLS- 79
           H ++ +     S S  S   +  S S I S SSS  CD      +  S SPSSS SS+  
Sbjct: 14  HDDVLDVVGSFSSSSSSYSSTSPSVSEISSGSSSLECDSFEEVTSPPSSSPSSSSSSVDH 73

Query: 80  --LSSTSSLLSQSELHEQQLPIKKGLSKFYEGKSRTFSSLSDVKSIEDLAKKEKNYKKK- 139
             L      LS      QQLPIK+GLSKFY+GKS++F+SL++V+S+EDLAK EK Y K+ 
Sbjct: 74  HQLVVMPDPLSDMSSIFQQLPIKRGLSKFYQGKSQSFTSLTNVRSLEDLAKPEKPYNKRL 133

Query: 140 ------DSRISPKAAISKK 145
                    ++ K  +SKK
Sbjct: 134 KSCKSYGGGLAEKEGVSKK 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LLW5_CUCSA4.0e-3284.21Uncharacterized protein OS=Cucumis sativus GN=Csa_2G372880 PE=4 SV=1[more]
W9R779_9ROSA4.6e-2047.40Uncharacterized protein OS=Morus notabilis GN=L484_005880 PE=4 SV=1[more]
A5BBL4_VITVI3.1e-1642.31Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011279 PE=4 SV=1[more]
F6HY89_VITVI4.0e-1642.31Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03340 PE=4 SV=... [more]
A0A151T2Y6_CAJCA5.8e-1542.86Uncharacterized protein OS=Cajanus cajan GN=KK1_015877 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778671960|ref|XP_011649716.1|6.8e-6584.47PREDICTED: uncharacterized protein LOC105434656 [Cucumis sativus][more]
gi|659088447|ref|XP_008444986.1|1.3e-6383.23PREDICTED: suppressor protein SRP40-like [Cucumis melo][more]
gi|700207674|gb|KGN62793.1|5.8e-3284.21hypothetical protein Csa_2G372880 [Cucumis sativus][more]
gi|703154172|ref|XP_010110872.1|1.0e-1242.76hypothetical protein L484_006987 [Morus notabilis][more]
gi|951041211|ref|XP_014517882.1|8.7e-1241.01PREDICTED: uncharacterized serine-rich protein C215.13-like [Vigna radiata var. ... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0046686 response to cadmium ion
biological_process GO:0006979 response to oxidative stress
biological_process GO:0050896 response to stimulus
cellular_component GO:0005575 cellular_component
cellular_component GO:0016607 nuclear speck
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022193Cla022193.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33172FAMILY NOT NAMEDcoord: 89..131
score: 3.1
NoneNo IPR availablePANTHERPTHR33172:SF14SUBFAMILY NOT NAMEDcoord: 89..131
score: 3.1

The following gene(s) are paralogous to this gene:

None