CmaCh17G011500 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G011500
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionMethyl-CpG-binding domain-containing family protein
LocationCma_Chr17 : 7996351 .. 7998195 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGGGTTCTTCCCGGGAAAATGAATTAACAAAAACAATTTGTTGCTGAAATTTTTTTGAGCGCTAAAATTCCACTCTCGCCTGGAGAAGATCGAAGATCACGCCACAGAGGCAGAGAGAGAATCGTCGGGTGACATGGCCGCTGCCAGACCTACAAGAACGCCGATGAAGGTACGGCGGAAAACTATCCTGTTCCTCCGATTTGTTCTGTATATCCTTCATAATTTCCCTTCTGATCGGATTCAATTATCTGTCCTTTGGCTTCTCGAAAATTTTAACCCTTAGATTCTGTGGATCCAAATTGGAAGTAGGAAACTAGAAAACAGGCGCAACTAGAACCGATGCTGCTTGGTGCTGCTGGTTACGCCTTTATTTTCCTCGTCTAAGGAATGCTACGGAACATGGAGTTTTGTTTAGAATGTTTCACTGTTACTACGGAAAGATTATTGAATGTGGCTGCTGCTAAATTTGAAGTACTTCTGTAGTTCCTTACTATAACCAATGGTGCAAAACTGTCACTCTGCAGAAGTCTCCATTAATTCATCAACGAGGAAGTGAGTTAAAGTGTTTGTTGGCAGTGGCTGTAAGGAGAGTCATTTTGATATTCAGAGTCGGCTGTTCCAGGACACTCAATTTTTTTCAGTTAGTTTTTCAGTGTATGCTTTGCATGTGGTCTTTGCTGTTTTAGCTTAGAATATAAGTGAATCTTATGAAAATTTTGAGTTCCTGGGAATTGGTAAGTTTGTTTAACCAAGCCAAAAGGCTATTTGAAGTCATAGATATGAGATGCCCACTTTCTGATGGTGGACAGTATTTCCATTTCTTGAAGTTTAAAGTGGAAGTTAGAGATTTAATGCTTTTATGTGAGCACTGGTCACTAAGCCCGAGTCCTTTTTATGTGAGCACTGTTGAATCTTCGAAGTTTCAGGTTTTAGTGATCAGATATCAATAGTGTAACTCTTACAAATTGTAATTTAGAAGGGGATCTTCATTTGTTGTTGCATCTATAAATAAGAAGTCCATGTCAAGTATTGGAGGCCTCTTTTGGTGTAGGCTAAGGTGCTATTGGTTTCTCTTTACAGTCGACACGGCTGCCAGTAGGTTTGTATGCTGCGCAATGTGAGGAATGCTTTAAATGGAGGTTGATAAGTACCCAAGAAGAGTACGAGGATATTAGAAGCAAGCTGATAGAAGAACCCTTTACATGCCATAGGAAAACCGATACTTCTTGCAAGGATCCTCCCGATATTGAGTACAATGCAACTCGAACTTGGGGCATTGACAAACCTAACATCCCAAAGACCCCAGAAGGTTTCACGAGACATTTGGTGCTCAGAAAGAATTTCTCTAAATTTGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCCCCTACAGAGATGCAAGCCTTTATAGGAGCAAATCCACGACACAAGGATGTACCTCTTACAGACTTCAGTTTTACAATCCCAAGATTAATGGACGAAACTGTTCCTGAAAGTAGCTTGAAAGAGGGCTTAGATAGCAGCAGTGCTAAAAGATTTAAGAAAGCAAAGGATGAATTTGCCCATACTGACTGAAAATCACTTGGGCTCCTTGCAGCATTCTGCTGCTATTCTTAACCCATTTGAATGGTTCTATTTTGACTTGTCTTTCAAGTGCTACTGTTGTACCATTTTCGTGTTAGCTTACGAAGACAATTGTGGTGTATTGTATAACATGGCCTTGTGTTTGATGACACTGAATATTCTTGGACTTTGAGTTTGATATGACTAATTAGTAACGACTTTGGAGAAAATAATCCATTTGTATTCGCAAACATGGCGAGTGGTATCAGTA

mRNA sequence

TTTGGGTTCTTCCCGGGAAAATGAATTAACAAAAACAATTTGTTGCTGAAATTTTTTTGAGCGCTAAAATTCCACTCTCGCCTGGAGAAGATCGAAGATCACGCCACAGAGGCAGAGAGAGAATCGTCGGGTGACATGGCCGCTGCCAGACCTACAAGAACGCCGATGAAGTCGACACGGCTGCCAGTAGGTTTGTATGCTGCGCAATGTGAGGAATGCTTTAAATGGAGGTTGATAAGTACCCAAGAAGAGTACGAGGATATTAGAAGCAAGCTGATAGAAGAACCCTTTACATGCCATAGGAAAACCGATACTTCTTGCAAGGATCCTCCCGATATTGAGTACAATGCAACTCGAACTTGGGGCATTGACAAACCTAACATCCCAAAGACCCCAGAAGGTTTCACGAGACATTTGGTGCTCAGAAAGAATTTCTCTAAATTTGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCCCCTACAGAGATGCAAGCCTTTATAGGAGCAAATCCACGACACAAGGATGTACCTCTTACAGACTTCAGTTTTACAATCCCAAGATTAATGGACGAAACTGTTCCTGAAAGTAGCTTGAAAGAGGGCTTAGATAGCAGCAGTGCTAAAAGATTTAAGAAAGCAAAGGATGAATTTGCCCATACTGACTGAAAATCACTTGGGCTCCTTGCAGCATTCTGCTGCTATTCTTAACCCATTTGAATGGTTCTATTTTGACTTGTCTTTCAAGTGCTACTGTTGTACCATTTTCGTGTTAGCTTACGAAGACAATTGTGGTGTATTGTATAACATGGCCTTGTGTTTGATGACACTGAATATTCTTGGACTTTGAGTTTGATATGACTAATTAGTAACGACTTTGGAGAAAATAATCCATTTGTATTCGCAAACATGGCGAGTGGTATCAGTA

Coding sequence (CDS)

ATGGCCGCTGCCAGACCTACAAGAACGCCGATGAAGTCGACACGGCTGCCAGTAGGTTTGTATGCTGCGCAATGTGAGGAATGCTTTAAATGGAGGTTGATAAGTACCCAAGAAGAGTACGAGGATATTAGAAGCAAGCTGATAGAAGAACCCTTTACATGCCATAGGAAAACCGATACTTCTTGCAAGGATCCTCCCGATATTGAGTACAATGCAACTCGAACTTGGGGCATTGACAAACCTAACATCCCAAAGACCCCAGAAGGTTTCACGAGACATTTGGTGCTCAGAAAGAATTTCTCTAAATTTGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCCCCTACAGAGATGCAAGCCTTTATAGGAGCAAATCCACGACACAAGGATGTACCTCTTACAGACTTCAGTTTTACAATCCCAAGATTAATGGACGAAACTGTTCCTGAAAGTAGCTTGAAAGAGGGCTTAGATAGCAGCAGTGCTAAAAGATTTAAGAAAGCAAAGGATGAATTTGCCCATACTGACTGA

Protein sequence

MAAARPTRTPMKSTRLPVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEMQAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKDEFAHTD
Homology
[Close]
BLAST of CmaCh17G011500 vs. Swiss-Prot
Match: MBD4_ARATH (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-46
Identity = 86/177 (48.59%), Postives = 124/177 (70.06%), Query Frame = 1 

Query: 5   RPTRTPMKSTRLP---VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTS 64
           +P +   K    P   +  YAAQC+ C KWR+I +QEEYEDIRSK++E+PF C +K   S
Sbjct: 9   KPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMS 68

Query: 65  CKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEM 124
           C++P DI+Y+++RTW IDKP +PKTP+GF R LVLRK++SK D YY TPTGK +RS  E+
Sbjct: 69  CEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEI 128

Query: 125 QAFIGANPRHKDVPLTDFSFTIPRLMDETV-PESSLKEGLDSSSAKRFKKAKDEFAH 178
            AF+ ANP  ++ PL DF+FT+P++M++TV P+  L     S++    +K+  + +H
Sbjct: 129 AAFVEANPEFRNAPLGDFNFTVPKVMEDTVPPDPKLGSPFPSTTTTTSEKSSVKQSH 185

[Close]
BLAST of CmaCh17G011500 vs. Swiss-Prot
Match: MBD1_ARATH (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=MBD1 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.7e-43
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 1 

Query: 18  VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKDPPDIEYNATRTWG 77
           + ++A QCE+C KWR I TQ+EYEDIRS++ E+PF C  K   SC+D  D+ Y+++RTW 
Sbjct: 52  IDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNYDSSRTWV 111

Query: 78  IDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEMQAFIGANPRHKDVPLT 137
           IDKP +P+TP GF R L+LRK++SK DAYY+TPTGK ++S  E+ AFI AN  +K   L 
Sbjct: 112 IDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQDYKYALLG 171

Query: 138 DFSFTIPRLMDETVPESSLKEGLDSSSAK 167
           DF+FT+P++M+ETVP   L +     S K
Sbjct: 172 DFNFTVPKVMEETVPSGILSDRTPKPSRK 200

[Close]
BLAST of CmaCh17G011500 vs. Swiss-Prot
Match: MBD2_ARATH (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.3e-26
Identity = 70/175 (40.00%), Postives = 106/175 (60.57%), Query Frame = 1 

Query: 10  PMKS-TRLP-VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHR----KTDTSCK 69
           P+ S T+ P +G +  QC  CFKWRL+ + ++YE+IR +L+E PF C      K D SC 
Sbjct: 46  PLSSRTQCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCD 105

Query: 70  DPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLR-KNFSKF-DAYYVTPTGKTVRSPTEM 129
            P DI  + TR W IDKPNI + P G+ R L +R +  ++F D YYV P+GK +RS  E+
Sbjct: 106 VPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEV 165

Query: 130 QAFIGANPRH--KDVPLTDFSFTIPR-LMDETVPE--SSLKEGLDSSSAKRFKKA 172
           Q ++  N  +  + V L+ FSF IP+ L D+ V +  + L + +D+++    K+A
Sbjct: 166 QKYLNDNSEYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSIDNTNTPVAKEA 220

[Close]
BLAST of CmaCh17G011500 vs. Swiss-Prot
Match: MBD3_ARATH (Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=MBD3 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-19
Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = 1 

Query: 21  YAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKDPPDIEYN---ATRTWG 80
           YAAQC +C K R I +QE+YE+IRSK +E+ F C R     C++P D+  N    T  W 
Sbjct: 12  YAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWF 71

Query: 81  IDKPNIPKTPEGFTRHLVLRKNFSKFDAYY--VTPTGKTVRSPTEMQAFIGANPRHKDVP 140
            D+ +IPKTP+G  R LV+R N  K D YY  + P  K  +S  E+  FI      KD+ 
Sbjct: 72  QDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMT 131

Query: 141 LTDFSFTIPRLMDETVPESSLKEGLDSSSAKR 168
           L + SF  P+ +         K+ +DS S+ R
Sbjct: 132 LEEVSFAAPKRL------KLKKKPVDSHSSSR 152

[Close]
BLAST of CmaCh17G011500 vs. Swiss-Prot
Match: MBD12_ARATH (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana GN=MBD12 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.1e-15
Identity = 51/157 (32.48%), Postives = 81/157 (51.59%), Query Frame = 1 

Query: 24  QCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKT----DTSCKDPPDIEYNATRTWGID 83
           QC +C KWRLI + + Y  I+   ++ PF C   +    + SC  P D       TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW--- 62

Query: 84  KPNIPKTPEGFTRHLVLRKNFSKF-DAYYVTPTGKTVRSPTEMQAFIGANPRH--KDVPL 143
            P+IP  P G++R + +R   +KF D YY  P+G+ +RS  E+Q+F+  +P +  + V  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 144 TDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKD 174
           + FSF IP+ +D+   +   +        KR K +KD
Sbjct: 123 SQFSFQIPKPLDDNYVKKRTR------PVKRRKSSKD 147

[Close]
BLAST of CmaCh17G011500 vs. TrEMBL
Match: A0A0A0K900_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G391290 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.4e-79
Identity = 141/178 (79.21%), Postives = 162/178 (91.01%), Query Frame = 1 

Query: 2   AAARPTRTPMKSTRLPVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTS 61
           AA RP +TP KSTRLPVGL+AAQCEECFKWRLISTQEEYE IRSK+IEEPFTC RKTDTS
Sbjct: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63

Query: 62  CKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEM 121
           C+DPPDI+Y+ TRTWGIDKPNIPKTPEGFTR LVLRKNF+KFDAYYVTPTGKTVRS TE+
Sbjct: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123

Query: 122 QAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKDEFAHTD 180
            AF+ ANP++KD+ L++FSF +P++M+ETVPES LKEGL+SSSAKR KK K+E AHT+
Sbjct: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE 181

[Close]
BLAST of CmaCh17G011500 vs. TrEMBL
Match: A9PE20_POPTR (Methyl-CpG-binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s13300g PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.9e-51
Identity = 97/175 (55.43%), Postives = 130/175 (74.29%), Query Frame = 1 

Query: 5   RPTRTPMKSTRLP------VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKT 64
           R   TP  S++ P      +  YAAQC++C KWR+I+T+EEYE+IRSK+ E PF C+RK 
Sbjct: 6   RSPETPKTSSKNPRVAVRSIDTYAAQCDKCLKWRVIATEEEYEEIRSKMEESPFVCNRKP 65

Query: 65  DTSCKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSP 124
             SC DP DIEYNATRTW ID+P IPKTPEGF R LVLR++FSK DAYY+TPTGK +R+ 
Sbjct: 66  GVSCDDPADIEYNATRTWVIDRPGIPKTPEGFKRSLVLRRDFSKMDAYYITPTGKKLRTR 125

Query: 125 TEMQAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKD 174
            E+ AFI ANP++KDV L+DF+FT P++M++T+PE ++++   S +  + K  KD
Sbjct: 126 NEIAAFIDANPKYKDVNLSDFNFTSPKVMEDTIPEDAVRKVSSSGNGNKRKALKD 180

[Close]
BLAST of CmaCh17G011500 vs. TrEMBL
Match: A0A067JNC8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21991 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.6e-50
Identity = 99/170 (58.24%), Postives = 124/170 (72.94%), Query Frame = 1 

Query: 8   RTPMKSTRLPV---GLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKD 67
           +T  K+ R+ V     YAAQCE C KWR+I TQEEYE+IRSK+ E PF C RK   SC+D
Sbjct: 12  KTSSKNPRVAVRSVDTYAAQCETCLKWRVIPTQEEYEEIRSKIAENPFVCDRKPGVSCED 71

Query: 68  PPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEMQAF 127
           P DIEYNATRTW IDKP +PKTP GF R LVLR++FSK DAYY+TPTGK +R+  E+ AF
Sbjct: 72  PADIEYNATRTWVIDKPGLPKTPNGFKRSLVLRRDFSKMDAYYITPTGKKLRTRNEISAF 131

Query: 128 IGANPRHKDVPLTDFSFTIPRLMDETVPESSLK-EGLDSSSAKRFKKAKD 174
           + ANP++KDV L DF+FT P++M++T+PE + K      SS K+ K  KD
Sbjct: 132 LEANPKYKDVSLEDFNFTSPKVMEDTIPEDAKKINATVGSSGKKAKALKD 181

[Close]
BLAST of CmaCh17G011500 vs. TrEMBL
Match: B9N926_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s22900g PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.1e-49
Identity = 94/175 (53.71%), Postives = 127/175 (72.57%), Query Frame = 1 

Query: 5   RPTRTPMKSTRLP------VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKT 64
           R   TP  S + P      +  YAAQC++C KWR+I T+EEYE+IRSK+ E P+ C RK 
Sbjct: 6   RSPETPKTSPKNPRVAVRSIDTYAAQCDKCLKWRVIPTEEEYEEIRSKMEENPYVCDRKP 65

Query: 65  DTSCKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSP 124
             SC DP DIEYNATRTW ID+P +PKTPEGF R LVLR++FSK DAYY+TPTGK +R+ 
Sbjct: 66  GVSCDDPADIEYNATRTWVIDRPGVPKTPEGFKRSLVLRRDFSKMDAYYITPTGKKLRTR 125

Query: 125 TEMQAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKD 174
            E+ AFI ANP++KDV L+ F+FT P++M++T+PE ++++   S++  + K  KD
Sbjct: 126 NEIAAFIEANPKYKDVNLSAFNFTSPKVMEDTIPEDAVRKVPSSANGNKKKALKD 180

[Close]
BLAST of CmaCh17G011500 vs. TrEMBL
Match: A0A067H8Z3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029175mg PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.3e-49
Identity = 90/153 (58.82%), Postives = 118/153 (77.12%), Query Frame = 1 

Query: 18  VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKDPPDIEYNATRTWG 77
           +  YAAQCE+CFKWR+I++ EEYE+IR K+ E PF C RK   SC+DP DIEY+A+R W 
Sbjct: 24  IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVWV 83

Query: 78  IDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEMQAFIGANPRHKDVPLT 137
           ID+P IPKTP GF R LVLRK+FSK DAYY+TPTGK +R+  E+  F+ ANP + DV L+
Sbjct: 84  IDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLS 143

Query: 138 DFSFTIPRLMDETVPESSLKEGLDSSSAKRFKK 171
           DF+F++P++MD+T+PE  +K+G  SS AKR  K
Sbjct: 144 DFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPK 176

[Close]
BLAST of CmaCh17G011500 vs. TAIR10
Match: AT3G63030.1 (AT3G63030.1 methyl-CPG-binding domain 4)

HSP 1 Score: 187.6 bits (475), Expect = 6.8e-48
Identity = 86/177 (48.59%), Postives = 124/177 (70.06%), Query Frame = 1 

Query: 5   RPTRTPMKSTRLP---VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTS 64
           +P +   K    P   +  YAAQC+ C KWR+I +QEEYEDIRSK++E+PF C +K   S
Sbjct: 9   KPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMS 68

Query: 65  CKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEM 124
           C++P DI+Y+++RTW IDKP +PKTP+GF R LVLRK++SK D YY TPTGK +RS  E+
Sbjct: 69  CEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEI 128

Query: 125 QAFIGANPRHKDVPLTDFSFTIPRLMDETV-PESSLKEGLDSSSAKRFKKAKDEFAH 178
            AF+ ANP  ++ PL DF+FT+P++M++TV P+  L     S++    +K+  + +H
Sbjct: 129 AAFVEANPEFRNAPLGDFNFTVPKVMEDTVPPDPKLGSPFPSTTTTTSEKSSVKQSH 185

[Close]
BLAST of CmaCh17G011500 vs. TAIR10
Match: AT4G22745.1 (AT4G22745.1 methyl-CPG-binding domain 1)

HSP 1 Score: 175.6 bits (444), Expect = 2.7e-44
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 1 

Query: 18  VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKDPPDIEYNATRTWG 77
           + ++A QCE+C KWR I TQ+EYEDIRS++ E+PF C  K   SC+D  D+ Y+++RTW 
Sbjct: 52  IDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNYDSSRTWV 111

Query: 78  IDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEMQAFIGANPRHKDVPLT 137
           IDKP +P+TP GF R L+LRK++SK DAYY+TPTGK ++S  E+ AFI AN  +K   L 
Sbjct: 112 IDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQDYKYALLG 171

Query: 138 DFSFTIPRLMDETVPESSLKEGLDSSSAK 167
           DF+FT+P++M+ETVP   L +     S K
Sbjct: 172 DFNFTVPKVMEETVPSGILSDRTPKPSRK 200

[Close]
BLAST of CmaCh17G011500 vs. TAIR10
Match: AT5G35330.1 (AT5G35330.1 methyl-CPG-binding domain protein 02)

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-27
Identity = 70/175 (40.00%), Postives = 106/175 (60.57%), Query Frame = 1 

Query: 10  PMKS-TRLP-VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHR----KTDTSCK 69
           P+ S T+ P +G +  QC  CFKWRL+ + ++YE+IR +L+E PF C      K D SC 
Sbjct: 46  PLSSRTQCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCD 105

Query: 70  DPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLR-KNFSKF-DAYYVTPTGKTVRSPTEM 129
            P DI  + TR W IDKPNI + P G+ R L +R +  ++F D YYV P+GK +RS  E+
Sbjct: 106 VPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEV 165

Query: 130 QAFIGANPRH--KDVPLTDFSFTIPR-LMDETVPE--SSLKEGLDSSSAKRFKKA 172
           Q ++  N  +  + V L+ FSF IP+ L D+ V +  + L + +D+++    K+A
Sbjct: 166 QKYLNDNSEYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSIDNTNTPVAKEA 220

[Close]
BLAST of CmaCh17G011500 vs. TAIR10
Match: AT4G00416.1 (AT4G00416.1 methyl-CPG-binding domain 3)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-20
Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = 1 

Query: 21  YAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKDPPDIEYN---ATRTWG 80
           YAAQC +C K R I +QE+YE+IRSK +E+ F C R     C++P D+  N    T  W 
Sbjct: 12  YAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWF 71

Query: 81  IDKPNIPKTPEGFTRHLVLRKNFSKFDAYY--VTPTGKTVRSPTEMQAFIGANPRHKDVP 140
            D+ +IPKTP+G  R LV+R N  K D YY  + P  K  +S  E+  FI      KD+ 
Sbjct: 72  QDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMT 131

Query: 141 LTDFSFTIPRLMDETVPESSLKEGLDSSSAKR 168
           L + SF  P+ +         K+ +DS S+ R
Sbjct: 132 LEEVSFAAPKRL------KLKKKPVDSHSSSR 152

[Close]
BLAST of CmaCh17G011500 vs. TAIR10
Match: AT5G35338.2 (AT5G35338.2 methyl-CPG-binding domain 12)

HSP 1 Score: 82.0 bits (201), Expect = 4.0e-16
Identity = 51/157 (32.48%), Postives = 81/157 (51.59%), Query Frame = 1 

Query: 24  QCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKT----DTSCKDPPDIEYNATRTWGID 83
           QC +C KWRLI + + Y  I+   ++ PF C   +    + SC  P D       TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW--- 62

Query: 84  KPNIPKTPEGFTRHLVLRKNFSKF-DAYYVTPTGKTVRSPTEMQAFIGANPRH--KDVPL 143
            P+IP  P G++R + +R   +KF D YY  P+G+ +RS  E+Q+F+  +P +  + V  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 144 TDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKD 174
           + FSF IP+ +D+   +   +        KR K +KD
Sbjct: 123 SQFSFQIPKPLDDNYVKKRTR------PVKRRKSSKD 147

[Close]
BLAST of CmaCh17G011500 vs. NCBI nr
Match: gi|449462288|ref|XP_004148873.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 9.1e-79
Identity = 141/178 (79.21%), Postives = 162/178 (91.01%), Query Frame = 1 

Query: 2   AAARPTRTPMKSTRLPVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTS 61
           AA RP +TP KSTRLPVGL+AAQCEECFKWRLISTQEEYE IRSK+IEEPFTC RKTDTS
Sbjct: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63

Query: 62  CKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEM 121
           C+DPPDI+Y+ TRTWGIDKPNIPKTPEGFTR LVLRKNF+KFDAYYVTPTGKTVRS TE+
Sbjct: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123

Query: 122 QAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKDEFAHTD 180
            AF+ ANP++KD+ L++FSF +P++M+ETVPES LKEGL+SSSAKR KK K+E AHT+
Sbjct: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE 181

[Close]
BLAST of CmaCh17G011500 vs. NCBI nr
Match: gi|659101067|ref|XP_008451407.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 1.2e-78
Identity = 139/178 (78.09%), Postives = 163/178 (91.57%), Query Frame = 1 

Query: 2   AAARPTRTPMKSTRLPVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTS 61
           AAARP +TP+KSTR+PV L+A QCEECFKWRLISTQEEYEDIRS++IEEPFTC RKTDTS
Sbjct: 3   AAARPPKTPIKSTRVPVSLFAVQCEECFKWRLISTQEEYEDIRSRMIEEPFTCQRKTDTS 62

Query: 62  CKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEM 121
           C+DPPDI Y+ TRTWGIDKPNIPKTPEGFTR LVLRKNF+KFDAYYVTPTGKTVRSPTE+
Sbjct: 63  CEDPPDINYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSPTEI 122

Query: 122 QAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKDEFAHTD 180
            AF+ ANP++KD+ L++FSF +P++M+ETVPES LKEGL+SSSAKR KK K+E A+T+
Sbjct: 123 LAFVQANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAYTE 180

[Close]
BLAST of CmaCh17G011500 vs. NCBI nr
Match: gi|224128656|ref|XP_002320386.1| (methyl-CpG-binding domain-containing family protein [Populus trichocarpa])

HSP 1 Score: 210.3 bits (534), Expect = 2.8e-51
Identity = 97/175 (55.43%), Postives = 130/175 (74.29%), Query Frame = 1 

Query: 5   RPTRTPMKSTRLP------VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKT 64
           R   TP  S++ P      +  YAAQC++C KWR+I+T+EEYE+IRSK+ E PF C+RK 
Sbjct: 6   RSPETPKTSSKNPRVAVRSIDTYAAQCDKCLKWRVIATEEEYEEIRSKMEESPFVCNRKP 65

Query: 65  DTSCKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSP 124
             SC DP DIEYNATRTW ID+P IPKTPEGF R LVLR++FSK DAYY+TPTGK +R+ 
Sbjct: 66  GVSCDDPADIEYNATRTWVIDRPGIPKTPEGFKRSLVLRRDFSKMDAYYITPTGKKLRTR 125

Query: 125 TEMQAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKD 174
            E+ AFI ANP++KDV L+DF+FT P++M++T+PE ++++   S +  + K  KD
Sbjct: 126 NEIAAFIDANPKYKDVNLSDFNFTSPKVMEDTIPEDAVRKVSSSGNGNKRKALKD 180

[Close]
BLAST of CmaCh17G011500 vs. NCBI nr
Match: gi|743870769|ref|XP_011033668.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Populus euphratica])

HSP 1 Score: 209.5 bits (532), Expect = 4.7e-51
Identity = 98/176 (55.68%), Postives = 130/176 (73.86%), Query Frame = 1 

Query: 5   RPTRTPMKSTRLP------VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKT 64
           R   TP  S++ P      +  YAAQC++C KWR+I+T+EEYE+IRSK+ E PF C+RK 
Sbjct: 6   RSPGTPKTSSKNPRVAVRSIDTYAAQCDKCLKWRVIATEEEYEEIRSKMEESPFVCNRKP 65

Query: 65  DTSCKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSP 124
             SC +P DIEYNATRTW IDKP IPKTP+GF R LVLR++FSK DAYY+TPTGK +R+ 
Sbjct: 66  GVSCDEPADIEYNATRTWVIDKPGIPKTPKGFKRSLVLRRDFSKMDAYYITPTGKKLRTR 125

Query: 125 TEMQAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKDE 175
            EM AFI ANP++KDV L+DF+FT P++M++T+PE + ++   S +  + K  KDE
Sbjct: 126 NEMAAFIEANPKYKDVNLSDFNFTSPKVMEDTIPEDAARKVSSSGNGNKRKALKDE 181

[Close]
BLAST of CmaCh17G011500 vs. NCBI nr
Match: gi|802794189|ref|XP_012092313.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Jatropha curcas])

HSP 1 Score: 206.1 bits (523), Expect = 5.2e-50
Identity = 99/170 (58.24%), Postives = 124/170 (72.94%), Query Frame = 1 

Query: 8   RTPMKSTRLPV---GLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKD 67
           +T  K+ R+ V     YAAQCE C KWR+I TQEEYE+IRSK+ E PF C RK   SC+D
Sbjct: 12  KTSSKNPRVAVRSVDTYAAQCETCLKWRVIPTQEEYEEIRSKIAENPFVCDRKPGVSCED 71

Query: 68  PPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEMQAF 127
           P DIEYNATRTW IDKP +PKTP GF R LVLR++FSK DAYY+TPTGK +R+  E+ AF
Sbjct: 72  PADIEYNATRTWVIDKPGLPKTPNGFKRSLVLRRDFSKMDAYYITPTGKKLRTRNEISAF 131

Query: 128 IGANPRHKDVPLTDFSFTIPRLMDETVPESSLK-EGLDSSSAKRFKKAKD 174
           + ANP++KDV L DF+FT P++M++T+PE + K      SS K+ K  KD
Sbjct: 132 LEANPKYKDVSLEDFNFTSPKVMEDTIPEDAKKINATVGSSGKKAKALKD 181

The following BLAST results are available for this feature:
BLAST of CmaCh17G011500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MBD4_ARATH1.2e-4648.59Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 P... [more]
MBD1_ARATH4.7e-4352.35Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=MBD1 P... [more]
MBD2_ARATH5.3e-2640.00Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 P... [more]
MBD3_ARATH2.1e-1939.47Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=MBD3 P... [more]
MBD12_ARATH7.1e-1532.48Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana GN=MBD12 P... [more]
BLAST of CmaCh17G011500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K900_CUCSA6.4e-7979.21Uncharacterized protein OS=Cucumis sativus GN=Csa_7G391290 PE=4 SV=1[more]
A9PE20_POPTR1.9e-5155.43Methyl-CpG-binding domain-containing family protein OS=Populus trichocarpa GN=PO... [more]
A0A067JNC8_JATCU3.6e-5058.24Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21991 PE=4 SV=1[more]
B9N926_POPTR3.1e-4953.71Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s22900g PE=4 SV=1[more]
A0A067H8Z3_CITSI5.3e-4958.82Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029175mg PE=4 SV=1[more]
BLAST of CmaCh17G011500 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G63030.16.8e-4848.59 methyl-CPG-binding domain 4[more]
AT4G22745.12.7e-4452.35 methyl-CPG-binding domain 1[more]
AT5G35330.13.0e-2740.00 methyl-CPG-binding domain protein 02[more]
AT4G00416.11.2e-2039.47 methyl-CPG-binding domain 3[more]
AT5G35338.24.0e-1632.48 methyl-CPG-binding domain 12[more]
BLAST of CmaCh17G011500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462288|ref|XP_004148873.1|9.1e-7979.21PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis sativus][more]
gi|659101067|ref|XP_008451407.1|1.2e-7878.09PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo][more]
gi|224128656|ref|XP_002320386.1|2.8e-5155.43methyl-CpG-binding domain-containing family protein [Populus trichocarpa][more]
gi|743870769|ref|XP_011033668.1|4.7e-5155.68PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Populus euphrati... [more]
gi|802794189|ref|XP_012092313.1|5.2e-5058.24PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001739Methyl_CpG_DNA-bd
IPR011124Znf_CW
IPR016177DNA-bd_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G011500.1CmaCh17G011500.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001739Methyl-CpG DNA bindingGENE3DG3DSA:3.30.890.10coord: 51..166
score: 5.6
IPR001739Methyl-CpG DNA bindingPFAMPF01429MBDcoord: 85..145
score: 1.7
IPR001739Methyl-CpG DNA bindingSMARTSM00391TAM_2coord: 78..151
score: 3.7
IPR001739Methyl-CpG DNA bindingPROFILEPS50982MBDcoord: 76..146
score: 13
IPR011124Zinc finger, CW-typePFAMPF07496zf-CWcoord: 21..67
score: 8.4
IPR011124Zinc finger, CW-typePROFILEPS51050ZF_CWcoord: 15..70
score: 11
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 58..155
score: 4.58
NoneNo IPR availablePANTHERPTHR12396METHYL-CPG BINDING PROTEIN, MBDcoord: 18..176
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G011500Cucsa.084840Cucumber (Gy14) v1cgycmaB0156
CmaCh17G011500Cla014729Watermelon (97103) v1cmawmB328
CmaCh17G011500Csa7G391290Cucumber (Chinese Long) v2cmacuB388
CmaCh17G011500MELO3C015875Melon (DHL92) v3.5.1cmameB327
CmaCh17G011500ClCG09G006740Watermelon (Charleston Gray)cmawcgB306
CmaCh17G011500CSPI07G16700Wild cucumber (PI 183967)cmacpiB389
CmaCh17G011500CmoCh08G003660Cucurbita moschata (Rifu)cmacmoB374
CmaCh17G011500CmoCh17G011260Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G011500Lsi02G023260Bottle gourd (USVL1VR-Ls)cmalsiB348
CmaCh17G011500Cp4.1LG12g11910Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G011500Cp4.1LG17g06780Cucurbita pepo (Zucchini)cmacpeB376
CmaCh17G011500MELO3C015875.2Melon (DHL92) v3.6.1cmamedB380
CmaCh17G011500CsaV3_7G028470Cucumber (Chinese Long) v3cmacucB0458
CmaCh17G011500Cla97C09G169310Watermelon (97103) v2cmawmbB386
CmaCh17G011500Bhi09G000828Wax gourdcmawgoB0489
CmaCh17G011500CsGy7G015180Cucumber (Gy14) v2cgybcmaB921
CmaCh17G011500Carg22180Silver-seed gourdcarcmaB1191
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh17G011500CmaCh08G003710Cucurbita maxima (Rimu)cmacmaB382
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G011500Cucumber (Chinese Long) v3cmacucB0462
CmaCh17G011500Wax gourdcmawgoB0482
CmaCh17G011500Cucumber (Gy14) v1cgycmaB0157
CmaCh17G011500Wild cucumber (PI 183967)cmacpiB392
CmaCh17G011500Cucumber (Chinese Long) v2cmacuB385
CmaCh17G011500Watermelon (97103) v1cmawmB343
CmaCh17G011500Cucurbita pepo (Zucchini)cmacpeB372
CmaCh17G011500Bottle gourd (USVL1VR-Ls)cmalsiB354
CmaCh17G011500Cucumber (Gy14) v2cgybcmaB925
CmaCh17G011500Silver-seed gourdcarcmaB0142