CmaCh17G011500.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G011500.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Methyl-CpG-binding domain-containing family protein
Location	Cma_Chr17 : 7996351 .. 7998195 (+)
Sequence length	934

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGGTTCTTCCCGGGAAAATGAATTAACAAAAACAATTTGTTGCTGAAATTTTTTTGAGCGCTAAAATTCCACTCTCGCCTGGAGAAGATCGAAGATCACGCCACAGAGGCAGAGAGAGAATCGTCGGGTGACATGGCCGCTGCCAGACCTACAAGAACGCCGATGAAGGTACGGCGGAAAACTATCCTGTTCCTCCGATTTGTTCTGTATATCCTTCATAATTTCCCTTCTGATCGGATTCAATTATCTGTCCTTTGGCTTCTCGAAAATTTTAACCCTTAGATTCTGTGGATCCAAATTGGAAGTAGGAAACTAGAAAACAGGCGCAACTAGAACCGATGCTGCTTGGTGCTGCTGGTTACGCCTTTATTTTCCTCGTCTAAGGAATGCTACGGAACATGGAGTTTTGTTTAGAATGTTTCACTGTTACTACGGAAAGATTATTGAATGTGGCTGCTGCTAAATTTGAAGTACTTCTGTAGTTCCTTACTATAACCAATGGTGCAAAACTGTCACTCTGCAGAAGTCTCCATTAATTCATCAACGAGGAAGTGAGTTAAAGTGTTTGTTGGCAGTGGCTGTAAGGAGAGTCATTTTGATATTCAGAGTCGGCTGTTCCAGGACACTCAATTTTTTTCAGTTAGTTTTTCAGTGTATGCTTTGCATGTGGTCTTTGCTGTTTTAGCTTAGAATATAAGTGAATCTTATGAAAATTTTGAGTTCCTGGGAATTGGTAAGTTTGTTTAACCAAGCCAAAAGGCTATTTGAAGTCATAGATATGAGATGCCCACTTTCTGATGGTGGACAGTATTTCCATTTCTTGAAGTTTAAAGTGGAAGTTAGAGATTTAATGCTTTTATGTGAGCACTGGTCACTAAGCCCGAGTCCTTTTTATGTGAGCACTGTTGAATCTTCGAAGTTTCAGGTTTTAGTGATCAGATATCAATAGTGTAACTCTTACAAATTGTAATTTAGAAGGGGATCTTCATTTGTTGTTGCATCTATAAATAAGAAGTCCATGTCAAGTATTGGAGGCCTCTTTTGGTGTAGGCTAAGGTGCTATTGGTTTCTCTTTACAGTCGACACGGCTGCCAGTAGGTTTGTATGCTGCGCAATGTGAGGAATGCTTTAAATGGAGGTTGATAAGTACCCAAGAAGAGTACGAGGATATTAGAAGCAAGCTGATAGAAGAACCCTTTACATGCCATAGGAAAACCGATACTTCTTGCAAGGATCCTCCCGATATTGAGTACAATGCAACTCGAACTTGGGGCATTGACAAACCTAACATCCCAAAGACCCCAGAAGGTTTCACGAGACATTTGGTGCTCAGAAAGAATTTCTCTAAATTTGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCCCCTACAGAGATGCAAGCCTTTATAGGAGCAAATCCACGACACAAGGATGTACCTCTTACAGACTTCAGTTTTACAATCCCAAGATTAATGGACGAAACTGTTCCTGAAAGTAGCTTGAAAGAGGGCTTAGATAGCAGCAGTGCTAAAAGATTTAAGAAAGCAAAGGATGAATTTGCCCATACTGACTGAAAATCACTTGGGCTCCTTGCAGCATTCTGCTGCTATTCTTAACCCATTTGAATGGTTCTATTTTGACTTGTCTTTCAAGTGCTACTGTTGTACCATTTTCGTGTTAGCTTACGAAGACAATTGTGGTGTATTGTATAACATGGCCTTGTGTTTGATGACACTGAATATTCTTGGACTTTGAGTTTGATATGACTAATTAGTAACGACTTTGGAGAAAATAATCCATTTGTATTCGCAAACATGGCGAGTGGTATCAGTA

mRNA sequence

TTTGGGTTCTTCCCGGGAAAATGAATTAACAAAAACAATTTGTTGCTGAAATTTTTTTGAGCGCTAAAATTCCACTCTCGCCTGGAGAAGATCGAAGATCACGCCACAGAGGCAGAGAGAGAATCGTCGGGTGACATGGCCGCTGCCAGACCTACAAGAACGCCGATGAAGTCGACACGGCTGCCAGTAGGTTTGTATGCTGCGCAATGTGAGGAATGCTTTAAATGGAGGTTGATAAGTACCCAAGAAGAGTACGAGGATATTAGAAGCAAGCTGATAGAAGAACCCTTTACATGCCATAGGAAAACCGATACTTCTTGCAAGGATCCTCCCGATATTGAGTACAATGCAACTCGAACTTGGGGCATTGACAAACCTAACATCCCAAAGACCCCAGAAGGTTTCACGAGACATTTGGTGCTCAGAAAGAATTTCTCTAAATTTGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCCCCTACAGAGATGCAAGCCTTTATAGGAGCAAATCCACGACACAAGGATGTACCTCTTACAGACTTCAGTTTTACAATCCCAAGATTAATGGACGAAACTGTTCCTGAAAGTAGCTTGAAAGAGGGCTTAGATAGCAGCAGTGCTAAAAGATTTAAGAAAGCAAAGGATGAATTTGCCCATACTGACTGAAAATCACTTGGGCTCCTTGCAGCATTCTGCTGCTATTCTTAACCCATTTGAATGGTTCTATTTTGACTTGTCTTTCAAGTGCTACTGTTGTACCATTTTCGTGTTAGCTTACGAAGACAATTGTGGTGTATTGTATAACATGGCCTTGTGTTTGATGACACTGAATATTCTTGGACTTTGAGTTTGATATGACTAATTAGTAACGACTTTGGAGAAAATAATCCATTTGTATTCGCAAACATGGCGAGTGGTATCAGTA

Coding sequence (CDS)

ATGGCCGCTGCCAGACCTACAAGAACGCCGATGAAGTCGACACGGCTGCCAGTAGGTTTGTATGCTGCGCAATGTGAGGAATGCTTTAAATGGAGGTTGATAAGTACCCAAGAAGAGTACGAGGATATTAGAAGCAAGCTGATAGAAGAACCCTTTACATGCCATAGGAAAACCGATACTTCTTGCAAGGATCCTCCCGATATTGAGTACAATGCAACTCGAACTTGGGGCATTGACAAACCTAACATCCCAAAGACCCCAGAAGGTTTCACGAGACATTTGGTGCTCAGAAAGAATTTCTCTAAATTTGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCCCCTACAGAGATGCAAGCCTTTATAGGAGCAAATCCACGACACAAGGATGTACCTCTTACAGACTTCAGTTTTACAATCCCAAGATTAATGGACGAAACTGTTCCTGAAAGTAGCTTGAAAGAGGGCTTAGATAGCAGCAGTGCTAAAAGATTTAAGAAAGCAAAGGATGAATTTGCCCATACTGACTGA

Protein sequence

MAAARPTRTPMKSTRLPVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEMQAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKDEFAHTD

Homology

[Close]

BLAST of CmaCh17G011500.1 vs. Swiss-Prot
Match: MBD4_ARATH (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-46
Identity = 86/177 (48.59%), Postives = 124/177 (70.06%), Query Frame = 1


Query: 5   RPTRTPMKSTRLP---VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTS 64
           +P +   K    P   +  YAAQC+ C KWR+I +QEEYEDIRSK++E+PF C +K   S
Sbjct: 9   KPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMS 68

Query: 65  CKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEM 124
           C++P DI+Y+++RTW IDKP +PKTP+GF R LVLRK++SK D YY TPTGK +RS  E+
Sbjct: 69  CEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEI 128

Query: 125 QAFIGANPRHKDVPLTDFSFTIPRLMDETV-PESSLKEGLDSSSAKRFKKAKDEFAH 178
            AF+ ANP  ++ PL DF+FT+P++M++TV P+  L     S++    +K+  + +H
Sbjct: 129 AAFVEANPEFRNAPLGDFNFTVPKVMEDTVPPDPKLGSPFPSTTTTTSEKSSVKQSH 185

[Close]

BLAST of CmaCh17G011500.1 vs. Swiss-Prot
Match: MBD1_ARATH (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=MBD1 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.7e-43
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 1


Query: 18  VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKDPPDIEYNATRTWG 77
           + ++A QCE+C KWR I TQ+EYEDIRS++ E+PF C  K   SC+D  D+ Y+++RTW 
Sbjct: 52  IDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNYDSSRTWV 111

Query: 78  IDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEMQAFIGANPRHKDVPLT 137
           IDKP +P+TP GF R L+LRK++SK DAYY+TPTGK ++S  E+ AFI AN  +K   L 
Sbjct: 112 IDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQDYKYALLG 171

Query: 138 DFSFTIPRLMDETVPESSLKEGLDSSSAK 167
           DF+FT+P++M+ETVP   L +     S K
Sbjct: 172 DFNFTVPKVMEETVPSGILSDRTPKPSRK 200

[Close]

BLAST of CmaCh17G011500.1 vs. Swiss-Prot
Match: MBD2_ARATH (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.3e-26
Identity = 70/175 (40.00%), Postives = 106/175 (60.57%), Query Frame = 1


Query: 10  PMKS-TRLP-VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHR----KTDTSCK 69
           P+ S T+ P +G +  QC  CFKWRL+ + ++YE+IR +L+E PF C      K D SC 
Sbjct: 46  PLSSRTQCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCD 105

Query: 70  DPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLR-KNFSKF-DAYYVTPTGKTVRSPTEM 129
            P DI  + TR W IDKPNI + P G+ R L +R +  ++F D YYV P+GK +RS  E+
Sbjct: 106 VPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEV 165

Query: 130 QAFIGANPRH--KDVPLTDFSFTIPR-LMDETVPE--SSLKEGLDSSSAKRFKKA 172
           Q ++  N  +  + V L+ FSF IP+ L D+ V +  + L + +D+++    K+A
Sbjct: 166 QKYLNDNSEYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSIDNTNTPVAKEA 220

[Close]

BLAST of CmaCh17G011500.1 vs. Swiss-Prot
Match: MBD3_ARATH (Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=MBD3 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-19
Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = 1


Query: 21  YAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKDPPDIEYN---ATRTWG 80
           YAAQC +C K R I +QE+YE+IRSK +E+ F C R     C++P D+  N    T  W 
Sbjct: 12  YAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWF 71

Query: 81  IDKPNIPKTPEGFTRHLVLRKNFSKFDAYY--VTPTGKTVRSPTEMQAFIGANPRHKDVP 140
            D+ +IPKTP+G  R LV+R N  K D YY  + P  K  +S  E+  FI      KD+ 
Sbjct: 72  QDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMT 131

Query: 141 LTDFSFTIPRLMDETVPESSLKEGLDSSSAKR 168
           L + SF  P+ +         K+ +DS S+ R
Sbjct: 132 LEEVSFAAPKRL------KLKKKPVDSHSSSR 152

[Close]

BLAST of CmaCh17G011500.1 vs. Swiss-Prot
Match: MBD12_ARATH (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana GN=MBD12 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.1e-15
Identity = 51/157 (32.48%), Postives = 81/157 (51.59%), Query Frame = 1


Query: 24  QCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKT----DTSCKDPPDIEYNATRTWGID 83
           QC +C KWRLI + + Y  I+   ++ PF C   +    + SC  P D       TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW--- 62

Query: 84  KPNIPKTPEGFTRHLVLRKNFSKF-DAYYVTPTGKTVRSPTEMQAFIGANPRH--KDVPL 143
            P+IP  P G++R + +R   +KF D YY  P+G+ +RS  E+Q+F+  +P +  + V  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 144 TDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKD 174
           + FSF IP+ +D+   +   +        KR K +KD
Sbjct: 123 SQFSFQIPKPLDDNYVKKRTR------PVKRRKSSKD 147

[Close]

BLAST of CmaCh17G011500.1 vs. TrEMBL
Match: A0A0A0K900_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G391290 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.4e-79
Identity = 141/178 (79.21%), Postives = 162/178 (91.01%), Query Frame = 1


Query: 2   AAARPTRTPMKSTRLPVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTS 61
           AA RP +TP KSTRLPVGL+AAQCEECFKWRLISTQEEYE IRSK+IEEPFTC RKTDTS
Sbjct: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63

Query: 62  CKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEM 121
           C+DPPDI+Y+ TRTWGIDKPNIPKTPEGFTR LVLRKNF+KFDAYYVTPTGKTVRS TE+
Sbjct: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123

Query: 122 QAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKDEFAHTD 180
            AF+ ANP++KD+ L++FSF +P++M+ETVPES LKEGL+SSSAKR KK K+E AHT+
Sbjct: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE 181

[Close]

BLAST of CmaCh17G011500.1 vs. TrEMBL
Match: A9PE20_POPTR (Methyl-CpG-binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s13300g PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.9e-51
Identity = 97/175 (55.43%), Postives = 130/175 (74.29%), Query Frame = 1


Query: 5   RPTRTPMKSTRLP------VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKT 64
           R   TP  S++ P      +  YAAQC++C KWR+I+T+EEYE+IRSK+ E PF C+RK 
Sbjct: 6   RSPETPKTSSKNPRVAVRSIDTYAAQCDKCLKWRVIATEEEYEEIRSKMEESPFVCNRKP 65

Query: 65  DTSCKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSP 124
             SC DP DIEYNATRTW ID+P IPKTPEGF R LVLR++FSK DAYY+TPTGK +R+ 
Sbjct: 66  GVSCDDPADIEYNATRTWVIDRPGIPKTPEGFKRSLVLRRDFSKMDAYYITPTGKKLRTR 125

Query: 125 TEMQAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKD 174
            E+ AFI ANP++KDV L+DF+FT P++M++T+PE ++++   S +  + K  KD
Sbjct: 126 NEIAAFIDANPKYKDVNLSDFNFTSPKVMEDTIPEDAVRKVSSSGNGNKRKALKD 180

[Close]

BLAST of CmaCh17G011500.1 vs. TrEMBL
Match: A0A067JNC8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21991 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.6e-50
Identity = 99/170 (58.24%), Postives = 124/170 (72.94%), Query Frame = 1


Query: 8   RTPMKSTRLPV---GLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKD 67
           +T  K+ R+ V     YAAQCE C KWR+I TQEEYE+IRSK+ E PF C RK   SC+D
Sbjct: 12  KTSSKNPRVAVRSVDTYAAQCETCLKWRVIPTQEEYEEIRSKIAENPFVCDRKPGVSCED 71

Query: 68  PPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEMQAF 127
           P DIEYNATRTW IDKP +PKTP GF R LVLR++FSK DAYY+TPTGK +R+  E+ AF
Sbjct: 72  PADIEYNATRTWVIDKPGLPKTPNGFKRSLVLRRDFSKMDAYYITPTGKKLRTRNEISAF 131

Query: 128 IGANPRHKDVPLTDFSFTIPRLMDETVPESSLK-EGLDSSSAKRFKKAKD 174
           + ANP++KDV L DF+FT P++M++T+PE + K      SS K+ K  KD
Sbjct: 132 LEANPKYKDVSLEDFNFTSPKVMEDTIPEDAKKINATVGSSGKKAKALKD 181

[Close]

BLAST of CmaCh17G011500.1 vs. TrEMBL
Match: B9N926_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s22900g PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.1e-49
Identity = 94/175 (53.71%), Postives = 127/175 (72.57%), Query Frame = 1


Query: 5   RPTRTPMKSTRLP------VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKT 64
           R   TP  S + P      +  YAAQC++C KWR+I T+EEYE+IRSK+ E P+ C RK 
Sbjct: 6   RSPETPKTSPKNPRVAVRSIDTYAAQCDKCLKWRVIPTEEEYEEIRSKMEENPYVCDRKP 65

Query: 65  DTSCKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSP 124
             SC DP DIEYNATRTW ID+P +PKTPEGF R LVLR++FSK DAYY+TPTGK +R+ 
Sbjct: 66  GVSCDDPADIEYNATRTWVIDRPGVPKTPEGFKRSLVLRRDFSKMDAYYITPTGKKLRTR 125

Query: 125 TEMQAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKD 174
            E+ AFI ANP++KDV L+ F+FT P++M++T+PE ++++   S++  + K  KD
Sbjct: 126 NEIAAFIEANPKYKDVNLSAFNFTSPKVMEDTIPEDAVRKVPSSANGNKKKALKD 180

[Close]

BLAST of CmaCh17G011500.1 vs. TrEMBL
Match: A0A067H8Z3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029175mg PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.3e-49
Identity = 90/153 (58.82%), Postives = 118/153 (77.12%), Query Frame = 1


Query: 18  VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKDPPDIEYNATRTWG 77
           +  YAAQCE+CFKWR+I++ EEYE+IR K+ E PF C RK   SC+DP DIEY+A+R W 
Sbjct: 24  IDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGVSCEDPADIEYDASRVWV 83

Query: 78  IDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEMQAFIGANPRHKDVPLT 137
           ID+P IPKTP GF R LVLRK+FSK DAYY+TPTGK +R+  E+  F+ ANP + DV L+
Sbjct: 84  IDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNEVAGFLAANPEYSDVSLS 143

Query: 138 DFSFTIPRLMDETVPESSLKEGLDSSSAKRFKK 171
           DF+F++P++MD+T+PE  +K+G  SS AKR  K
Sbjct: 144 DFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPK 176

[Close]

BLAST of CmaCh17G011500.1 vs. TAIR10
Match: AT3G63030.1 (AT3G63030.1 methyl-CPG-binding domain 4)

HSP 1 Score: 187.6 bits (475), Expect = 6.8e-48
Identity = 86/177 (48.59%), Postives = 124/177 (70.06%), Query Frame = 1


Query: 5   RPTRTPMKSTRLP---VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTS 64
           +P +   K    P   +  YAAQC+ C KWR+I +QEEYEDIRSK++E+PF C +K   S
Sbjct: 9   KPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMS 68

Query: 65  CKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEM 124
           C++P DI+Y+++RTW IDKP +PKTP+GF R LVLRK++SK D YY TPTGK +RS  E+
Sbjct: 69  CEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEI 128

Query: 125 QAFIGANPRHKDVPLTDFSFTIPRLMDETV-PESSLKEGLDSSSAKRFKKAKDEFAH 178
            AF+ ANP  ++ PL DF+FT+P++M++TV P+  L     S++    +K+  + +H
Sbjct: 129 AAFVEANPEFRNAPLGDFNFTVPKVMEDTVPPDPKLGSPFPSTTTTTSEKSSVKQSH 185

[Close]

BLAST of CmaCh17G011500.1 vs. TAIR10
Match: AT4G22745.1 (AT4G22745.1 methyl-CPG-binding domain 1)

HSP 1 Score: 175.6 bits (444), Expect = 2.7e-44
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 1


Query: 18  VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKDPPDIEYNATRTWG 77
           + ++A QCE+C KWR I TQ+EYEDIRS++ E+PF C  K   SC+D  D+ Y+++RTW 
Sbjct: 52  IDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNYDSSRTWV 111

Query: 78  IDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEMQAFIGANPRHKDVPLT 137
           IDKP +P+TP GF R L+LRK++SK DAYY+TPTGK ++S  E+ AFI AN  +K   L 
Sbjct: 112 IDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQDYKYALLG 171

Query: 138 DFSFTIPRLMDETVPESSLKEGLDSSSAK 167
           DF+FT+P++M+ETVP   L +     S K
Sbjct: 172 DFNFTVPKVMEETVPSGILSDRTPKPSRK 200

[Close]

BLAST of CmaCh17G011500.1 vs. TAIR10
Match: AT5G35330.1 (AT5G35330.1 methyl-CPG-binding domain protein 02)

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-27
Identity = 70/175 (40.00%), Postives = 106/175 (60.57%), Query Frame = 1


Query: 10  PMKS-TRLP-VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHR----KTDTSCK 69
           P+ S T+ P +G +  QC  CFKWRL+ + ++YE+IR +L+E PF C      K D SC 
Sbjct: 46  PLSSRTQCPSIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCD 105

Query: 70  DPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLR-KNFSKF-DAYYVTPTGKTVRSPTEM 129
            P DI  + TR W IDKPNI + P G+ R L +R +  ++F D YYV P+GK +RS  E+
Sbjct: 106 VPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEV 165

Query: 130 QAFIGANPRH--KDVPLTDFSFTIPR-LMDETVPE--SSLKEGLDSSSAKRFKKA 172
           Q ++  N  +  + V L+ FSF IP+ L D+ V +  + L + +D+++    K+A
Sbjct: 166 QKYLNDNSEYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSIDNTNTPVAKEA 220

[Close]

BLAST of CmaCh17G011500.1 vs. TAIR10
Match: AT4G00416.1 (AT4G00416.1 methyl-CPG-binding domain 3)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-20
Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = 1


Query: 21  YAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKDPPDIEYN---ATRTWG 80
           YAAQC +C K R I +QE+YE+IRSK +E+ F C R     C++P D+  N    T  W 
Sbjct: 12  YAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWF 71

Query: 81  IDKPNIPKTPEGFTRHLVLRKNFSKFDAYY--VTPTGKTVRSPTEMQAFIGANPRHKDVP 140
            D+ +IPKTP+G  R LV+R N  K D YY  + P  K  +S  E+  FI      KD+ 
Sbjct: 72  QDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMT 131

Query: 141 LTDFSFTIPRLMDETVPESSLKEGLDSSSAKR 168
           L + SF  P+ +         K+ +DS S+ R
Sbjct: 132 LEEVSFAAPKRL------KLKKKPVDSHSSSR 152

[Close]

BLAST of CmaCh17G011500.1 vs. TAIR10
Match: AT5G35338.2 (AT5G35338.2 methyl-CPG-binding domain 12)

HSP 1 Score: 82.0 bits (201), Expect = 4.0e-16
Identity = 51/157 (32.48%), Postives = 81/157 (51.59%), Query Frame = 1


Query: 24  QCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKT----DTSCKDPPDIEYNATRTWGID 83
           QC +C KWRLI + + Y  I+   ++ PF C   +    + SC  P D       TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW--- 62

Query: 84  KPNIPKTPEGFTRHLVLRKNFSKF-DAYYVTPTGKTVRSPTEMQAFIGANPRH--KDVPL 143
            P+IP  P G++R + +R   +KF D YY  P+G+ +RS  E+Q+F+  +P +  + V  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 144 TDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKD 174
           + FSF IP+ +D+   +   +        KR K +KD
Sbjct: 123 SQFSFQIPKPLDDNYVKKRTR------PVKRRKSSKD 147

[Close]

BLAST of CmaCh17G011500.1 vs. NCBI nr
Match: gi|449462288|ref|XP_004148873.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 9.1e-79
Identity = 141/178 (79.21%), Postives = 162/178 (91.01%), Query Frame = 1


Query: 2   AAARPTRTPMKSTRLPVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTS 61
           AA RP +TP KSTRLPVGL+AAQCEECFKWRLISTQEEYE IRSK+IEEPFTC RKTDTS
Sbjct: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63

Query: 62  CKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEM 121
           C+DPPDI+Y+ TRTWGIDKPNIPKTPEGFTR LVLRKNF+KFDAYYVTPTGKTVRS TE+
Sbjct: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123

Query: 122 QAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKDEFAHTD 180
            AF+ ANP++KD+ L++FSF +P++M+ETVPES LKEGL+SSSAKR KK K+E AHT+
Sbjct: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE 181

[Close]

BLAST of CmaCh17G011500.1 vs. NCBI nr
Match: gi|659101067|ref|XP_008451407.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 1.2e-78
Identity = 139/178 (78.09%), Postives = 163/178 (91.57%), Query Frame = 1


Query: 2   AAARPTRTPMKSTRLPVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTS 61
           AAARP +TP+KSTR+PV L+A QCEECFKWRLISTQEEYEDIRS++IEEPFTC RKTDTS
Sbjct: 3   AAARPPKTPIKSTRVPVSLFAVQCEECFKWRLISTQEEYEDIRSRMIEEPFTCQRKTDTS 62

Query: 62  CKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEM 121
           C+DPPDI Y+ TRTWGIDKPNIPKTPEGFTR LVLRKNF+KFDAYYVTPTGKTVRSPTE+
Sbjct: 63  CEDPPDINYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSPTEI 122

Query: 122 QAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKDEFAHTD 180
            AF+ ANP++KD+ L++FSF +P++M+ETVPES LKEGL+SSSAKR KK K+E A+T+
Sbjct: 123 LAFVQANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAYTE 180

[Close]

BLAST of CmaCh17G011500.1 vs. NCBI nr
Match: gi|224128656|ref|XP_002320386.1| (methyl-CpG-binding domain-containing family protein [Populus trichocarpa])

HSP 1 Score: 210.3 bits (534), Expect = 2.8e-51
Identity = 97/175 (55.43%), Postives = 130/175 (74.29%), Query Frame = 1


Query: 5   RPTRTPMKSTRLP------VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKT 64
           R   TP  S++ P      +  YAAQC++C KWR+I+T+EEYE+IRSK+ E PF C+RK 
Sbjct: 6   RSPETPKTSSKNPRVAVRSIDTYAAQCDKCLKWRVIATEEEYEEIRSKMEESPFVCNRKP 65

Query: 65  DTSCKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSP 124
             SC DP DIEYNATRTW ID+P IPKTPEGF R LVLR++FSK DAYY+TPTGK +R+ 
Sbjct: 66  GVSCDDPADIEYNATRTWVIDRPGIPKTPEGFKRSLVLRRDFSKMDAYYITPTGKKLRTR 125

Query: 125 TEMQAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKD 174
            E+ AFI ANP++KDV L+DF+FT P++M++T+PE ++++   S +  + K  KD
Sbjct: 126 NEIAAFIDANPKYKDVNLSDFNFTSPKVMEDTIPEDAVRKVSSSGNGNKRKALKD 180

[Close]

BLAST of CmaCh17G011500.1 vs. NCBI nr
Match: gi|743870769|ref|XP_011033668.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Populus euphratica])

HSP 1 Score: 209.5 bits (532), Expect = 4.7e-51
Identity = 98/176 (55.68%), Postives = 130/176 (73.86%), Query Frame = 1


Query: 5   RPTRTPMKSTRLP------VGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKT 64
           R   TP  S++ P      +  YAAQC++C KWR+I+T+EEYE+IRSK+ E PF C+RK 
Sbjct: 6   RSPGTPKTSSKNPRVAVRSIDTYAAQCDKCLKWRVIATEEEYEEIRSKMEESPFVCNRKP 65

Query: 65  DTSCKDPPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSP 124
             SC +P DIEYNATRTW IDKP IPKTP+GF R LVLR++FSK DAYY+TPTGK +R+ 
Sbjct: 66  GVSCDEPADIEYNATRTWVIDKPGIPKTPKGFKRSLVLRRDFSKMDAYYITPTGKKLRTR 125

Query: 125 TEMQAFIGANPRHKDVPLTDFSFTIPRLMDETVPESSLKEGLDSSSAKRFKKAKDE 175
            EM AFI ANP++KDV L+DF+FT P++M++T+PE + ++   S +  + K  KDE
Sbjct: 126 NEMAAFIEANPKYKDVNLSDFNFTSPKVMEDTIPEDAARKVSSSGNGNKRKALKDE 181

[Close]

BLAST of CmaCh17G011500.1 vs. NCBI nr
Match: gi|802794189|ref|XP_012092313.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Jatropha curcas])

HSP 1 Score: 206.1 bits (523), Expect = 5.2e-50
Identity = 99/170 (58.24%), Postives = 124/170 (72.94%), Query Frame = 1


Query: 8   RTPMKSTRLPV---GLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTSCKD 67
           +T  K+ R+ V     YAAQCE C KWR+I TQEEYE+IRSK+ E PF C RK   SC+D
Sbjct: 12  KTSSKNPRVAVRSVDTYAAQCETCLKWRVIPTQEEYEEIRSKIAENPFVCDRKPGVSCED 71

Query: 68  PPDIEYNATRTWGIDKPNIPKTPEGFTRHLVLRKNFSKFDAYYVTPTGKTVRSPTEMQAF 127
           P DIEYNATRTW IDKP +PKTP GF R LVLR++FSK DAYY+TPTGK +R+  E+ AF
Sbjct: 72  PADIEYNATRTWVIDKPGLPKTPNGFKRSLVLRRDFSKMDAYYITPTGKKLRTRNEISAF 131

Query: 128 IGANPRHKDVPLTDFSFTIPRLMDETVPESSLK-EGLDSSSAKRFKKAKD 174
           + ANP++KDV L DF+FT P++M++T+PE + K      SS K+ K  KD
Sbjct: 132 LEANPKYKDVSLEDFNFTSPKVMEDTIPEDAKKINATVGSSGKKAKALKD 181

The following BLAST results are available for this feature:

BLAST of CmaCh17G011500.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MBD4_ARATH	1.2e-46	48.59	Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 P...	[more]
MBD1_ARATH	4.7e-43	52.35	Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=MBD1 P...	[more]
MBD2_ARATH	5.3e-26	40.00	Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 P...	[more]
MBD3_ARATH	2.1e-19	39.47	Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=MBD3 P...	[more]
MBD12_ARATH	7.1e-15	32.48	Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana GN=MBD12 P...	[more]

BLAST of CmaCh17G011500.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K900_CUCSA	6.4e-79	79.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G391290 PE=4 SV=1	[more]
A9PE20_POPTR	1.9e-51	55.43	Methyl-CpG-binding domain-containing family protein OS=Populus trichocarpa GN=PO...	[more]
A0A067JNC8_JATCU	3.6e-50	58.24	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21991 PE=4 SV=1	[more]
B9N926_POPTR	3.1e-49	53.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s22900g PE=4 SV=1	[more]
A0A067H8Z3_CITSI	5.3e-49	58.82	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029175mg PE=4 SV=1	[more]

BLAST of CmaCh17G011500.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G63030.1	6.8e-48	48.59	methyl-CPG-binding domain 4	[more]
AT4G22745.1	2.7e-44	52.35	methyl-CPG-binding domain 1	[more]
AT5G35330.1	3.0e-27	40.00	methyl-CPG-binding domain protein 02	[more]
AT4G00416.1	1.2e-20	39.47	methyl-CPG-binding domain 3	[more]
AT5G35338.2	4.0e-16	32.48	methyl-CPG-binding domain 12	[more]

BLAST of CmaCh17G011500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462288\|ref\|XP_004148873.1\|	9.1e-79	79.21	PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis sativus]	[more]
gi\|659101067\|ref\|XP_008451407.1\|	1.2e-78	78.09	PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo]	[more]
gi\|224128656\|ref\|XP_002320386.1\|	2.8e-51	55.43	methyl-CpG-binding domain-containing family protein [Populus trichocarpa]	[more]
gi\|743870769\|ref\|XP_011033668.1\|	4.7e-51	55.68	PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Populus euphrati...	[more]
gi\|802794189\|ref\|XP_012092313.1\|	5.2e-50	58.24	PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001739	Methyl_CpG_DNA-bd
IPR011124	Znf_CW
IPR016177	DNA-bd_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0008270	zinc ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh17G011500	CmaCh17G011500	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh17G011500.1	CmaCh17G011500.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G011500.1.exon.2	CmaCh17G011500.1.exon.2	exon
CmaCh17G011500.1.exon.1	CmaCh17G011500.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G011500.1.five_prime_UTR.1	CmaCh17G011500.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G011500.1.CDS.1	CmaCh17G011500.1.CDS.1	CDS
CmaCh17G011500.1.CDS.2	CmaCh17G011500.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G011500.1.three_prime_UTR.1	CmaCh17G011500.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	GENE3D	G3DSA:3.30.890.10		coord: 51..166 score: 5.6
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 85..145 score: 1.7
IPR001739	Methyl-CpG DNA binding	SMART	SM00391	TAM_2	coord: 78..151 score: 3.7
IPR001739	Methyl-CpG DNA binding	PROFILE	PS50982	MBD	coord: 76..146 score: 13
IPR011124	Zinc finger, CW-type	PFAM	PF07496	zf-CW	coord: 21..67 score: 8.4
IPR011124	Zinc finger, CW-type	PROFILE	PS51050	ZF_CW	coord: 15..70 score: 11
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 58..155 score: 4.58
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 18..176 score: 3.4