Cucsa.084840 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.084840
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Methyl-CpG-binding domain-containing family protein
Location	scaffold00862 : 493436 .. 495201 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGAAATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGGTACGCCGGAAACTCTATTCTCTTCCTCCAATTTATTCTTTATATCCTACATGGTTTCCTCTTTATCGGATTCATTCAATAATTTCAATTATCTCTCATTTGCGTTCTGGGGAACTGTAACCCTTAAATTCTGAAGATTGGAAAATACGGCCTAAGTAAATTGATGCTGTTTGGAGCTGGTTACGCCTTTGTTTTCCTCGTTTAGCGAGTACTGCGAAGTTTCACGGTGCATAGGGAAAATTTATTGAATGTGGCTATAATCAAGGGTGCGTAATTATCGGTTACATTGAAGCAGTCTCCTGCAATAATTTCTTGGAAATAGGAAAGTTGAATGGGGAGATAATTAGTTGAGTTTTGCTTAATTATGGAAAAaGGAGGTTTAATTGAACTTGATATTGGTTTGTAGGTCCATCTGTTGTGTGAGAATTAATGCTCATTTAAACATAATCTTAAAGAAATTCATCAAAGTTCAAGTTCGTTAAAATATTTGTTGGCAGTGGCTGTGGGGAAGTTATTATGAAATTCAACGTCAGCTATTCTGGGACACTCATTTTTATTATAGTTTCTTGAAGTTTTAAAGTGAAACTCAGAGGTTCGATGCTTCTTTGTGGGCATTGGTCACTAGGAATTTTTGTAATTATGTCATTGATCTTGTTAGTTTGGGCTCGAGAACATTTTGTAGTTAGTGGAGGACACATACTTCTTTACGGCTTATTCTTTATATTGTTCTTGTATTCTTTATTTGTTTTACTCAAACAGAAGTGAAAGTTAGAGATGGAAGTGAATTTCTGAGTCTCATGTGTTTACCGATTGGATTTCTTTAAGTGTAACTCTTACAACTTTTCATTTAATACTTGAAAGGATCTTCTTTTATTGTCGCGTTGATTGTTCCAACTATAAAAAaGAAGTCCATCTAAGTTATTAGAAGCCTCTTTTGGTGTAATCTAAGGTGTTATTGGTTTCTGTTTACAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGAAAATCACTAGGGATTTGCTCGTAGCATTCTATTGTTGATCTTAACCCTTGTGAATGATTTGATATTGTGCCGAAAGATGTAGAATGATGATTCTCCACTATTGTTTGTACCATTTTCTTGTTCACTTATGAGGAGAGTTGGGGTATATGGTATCATATTGCCATGTTTGATGACTGTCTGAAGATTGTTGGACTGAGTGAATTTGGTGACAGCAATGAGCAGTGACAAATATCTAGGAAAAAT

mRNA sequence

GCGAAATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGAAAATCACTAGGGATTTGCTCGTAGCATTCTATTGTTGATCTTAACCCTTGTGAATGATTTGATATTGTGCCGAAAGATGTAGAATGATGATTCTCCACTATTGTTTGTACCATTTTCTTGTTCACTTATGAGGAGAGTTGGGGTATATGGTATCATATTGCCATGTTTGATGACTGTCTGAAGATTGTTGGACTGAGTGAATTTGGTGACAGCAATGAGCAGTGACAAATATCTAGGAAAAAT

Coding sequence (CDS)

ATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGA

Protein sequence

MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE*

Homology

[Close]

BLAST of Cucsa.084840 vs. Swiss-Prot
Match: MBD4_ARATH (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-48
Identity = 86/151 (56.95%), Postives = 114/151 (75.50%), Query Frame = 1


Query: 7   RPPKTPTKSTRLP---VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 66
           +P K   K    P   +  +AAQC+ C KWR+I +QEEYE IRSK++E+PF CQ+K   S
Sbjct: 9   KPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMS 68

Query: 67  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 126
           CE+P DIDYD++RTW IDKP +PKTP+GF R LVLRK+++K D YY TPTGK +RS  E+
Sbjct: 69  CEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEI 128

Query: 127 LAFVEANPQYKDIALSNFSFAVPKIMEETVP 155
            AFVEANP++++  L +F+F VPK+ME+TVP
Sbjct: 129 AAFVEANPEFRNAPLGDFNFTVPKVMEDTVP 159

[Close]

BLAST of Cucsa.084840 vs. Swiss-Prot
Match: MBD1_ARATH (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=MBD1 PE=2 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.7e-46
Identity = 84/158 (53.16%), Postives = 113/158 (71.52%), Query Frame = 1


Query: 11  TPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPDI 70
           TP +S    + +FA QCE+C KWR I TQ+EYE IRS++ E+PF C+ K   SCED  D+
Sbjct: 47  TPGRS----IDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDL 106

Query: 71  DYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEAN 130
           +YD++RTW IDKP +P+TP GF R L+LRK+++K DAYY+TPTGK ++S  E+ AF++AN
Sbjct: 107 NYDSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDAN 166

Query: 131 PQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAK 169
             YK   L +F+F VPK+MEETVP  IL +     S K
Sbjct: 167 QDYKYALLGDFNFTVPKVMEETVPSGILSDRTPKPSRK 200

[Close]

BLAST of Cucsa.084840 vs. Swiss-Prot
Match: MBD2_ARATH (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.8e-27
Identity = 62/140 (44.29%), Postives = 89/140 (63.57%), Query Frame = 1


Query: 20  VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTC----QRKTDTSCEDPPDIDYDTT 79
           +G F  QC  CFKWRL+ + ++YE IR +++E PF C    + K D SC+ P DI  D T
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 80  RTWGIDKPNIPKTPEGFTRRLVLR-KNFTKF-DAYYVTPTGKTVRSSTEVLAFVEANPQY 139
           R W IDKPNI + P G+ R L +R +  T+F D YYV P+GK +RS+ EV  ++  N +Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 140 --KDIALSNFSFAVPKIMEE 152
             + + LS FSF +PK +++
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

[Close]

BLAST of Cucsa.084840 vs. Swiss-Prot
Match: MBD3_ARATH (Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=MBD3 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-21
Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 1


Query: 23  FAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPD--IDYDT-TRTWG 82
           +AAQC +C K R I +QE+YE IRSK +E+ F C+R     CE+P D  +++D+ T  W 
Sbjct: 12  YAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWF 71

Query: 83  IDKPNIPKTPEGFTRRLVLRKNFTKFDAYY--VTPTGKTVRSSTEVLAFVEANPQYKDIA 142
            D+ +IPKTP+G  R LV+R N  K D YY  + P  K  +S  EV  F+E   ++KD+ 
Sbjct: 72  QDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMT 131

Query: 143 LSNFSFAVPKIMEETVPESILKEGLNSSSAKR 170
           L   SFA PK ++      + K+ ++S S+ R
Sbjct: 132 LEEVSFAAPKRLK------LKKKPVDSHSSSR 152

[Close]

BLAST of Cucsa.084840 vs. Swiss-Prot
Match: MBD12_ARATH (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana GN=MBD12 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-16
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 1


Query: 26  QCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT----DTSCEDPPDIDYDTTRTWGID 85
           QC +C KWRLI + + Y  I+   ++ PF C   +    + SC  P D    T  TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW--- 62

Query: 86  KPNIPKTPEGFTRRLVLRKNFTKF-DAYYVTPTGKTVRSSTEVLAFVEANPQY--KDIAL 145
            P+IP  P G++R + +R   TKF D YY  P+G+ +RSS EV +F++ +P+Y  + +  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 146 SNFSFAVPKIMEE 152
           S FSF +PK +++
Sbjct: 123 SQFSFQIPKPLDD 129

[Close]

BLAST of Cucsa.084840 vs. TrEMBL
Match: A0A0A0K900_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G391290 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.1e-99
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1


Query: 1   MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT 60
           MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT
Sbjct: 1   MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT 60

Query: 61  DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS 120
           DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS
Sbjct: 61  DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS 120

Query: 121 TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT 180
           TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT
Sbjct: 121 TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of Cucsa.084840 vs. TrEMBL
Match: A0A0K9S4A0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_001680 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-51
Identity = 99/171 (57.89%), Postives = 131/171 (76.61%), Query Frame = 1


Query: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63
           A+ + P+T T +    +GL+A QC ECFKWRLIS +EEYE IRSK++EEPFTC +K D S
Sbjct: 31  ASSKKPQTGTNT----IGLYAVQCGECFKWRLISNEEEYEVIRSKLLEEPFTCSKKPDAS 90

Query: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123
           C DP DI+ D TRTW IDKPNIP+TP GF R+LVLR++F+K DA+YVTPTGK VRSSTEV
Sbjct: 91  CNDPADIEKDATRTWVIDKPNIPRTPVGFKRKLVLRRDFSKLDAHYVTPTGKKVRSSTEV 150

Query: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTK 175
             ++E NP+ K ++++ FSF VPK++EET+P+ I ++     SAK+ K +K
Sbjct: 151 AKYLEENPEVKGVSVNEFSFTVPKVVEETIPKDIERK----PSAKKAKDSK 193

[Close]

BLAST of Cucsa.084840 vs. TrEMBL
Match: V4U041_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022348mg PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.6e-51
Identity = 97/171 (56.73%), Postives = 126/171 (73.68%), Query Frame = 1


Query: 9   PKTPTKSTR------LPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDT 68
           PKT +K  R        +  +AAQCE+CFKWR+I++ EEYE IR KI E PF C RK   
Sbjct: 8   PKTASKKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGV 67

Query: 69  SCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTE 128
           SCEDP DI+YD +R W ID+P IPKTP GF R LVLRK+F+K DAYY+TPTGK +R+  E
Sbjct: 68  SCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNE 127

Query: 129 VLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKT 174
           V  F+ ANP+Y D++LS+F+F+VPK+M++T+PE ++K+G  SS AKR  KT
Sbjct: 128 VAGFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKT 178

[Close]

BLAST of Cucsa.084840 vs. TrEMBL
Match: D7TP90_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00770 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.7e-51
Identity = 94/166 (56.63%), Postives = 123/166 (74.10%), Query Frame = 1


Query: 10  KTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPD 69
           K  +   R  +G +A QCE C KWRLI T+EEYE IRS+ IEEPF C +K D SCEDP D
Sbjct: 8   KRKSALVRSSIGAYAVQCEACLKWRLIDTEEEYEEIRSRFIEEPFVCSKKADVSCEDPTD 67

Query: 70  IDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEA 129
           I+YD TRTW  DKPN+PKTP+GF R LVLRK+F+K DAYY+TPTGK VR+ +E+ A++ +
Sbjct: 68  IEYDATRTWAADKPNVPKTPKGFQRDLVLRKDFSKMDAYYITPTGKKVRALSEIAAYLSS 127

Query: 130 NPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKN 176
           NP  KD++ S+F+F VPKIM +T+P  I ++   S S K+ KK++N
Sbjct: 128 NPDCKDLSPSDFNFMVPKIMADTIPAHIERKVSTSGSNKKRKKSEN 173

[Close]

BLAST of Cucsa.084840 vs. TrEMBL
Match: A5ADK3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015457 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.7e-51
Identity = 94/166 (56.63%), Postives = 123/166 (74.10%), Query Frame = 1


Query: 10  KTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPD 69
           K  +   R  +G +A QCE C KWRLI T+EEYE IRS+ IEEPF C +K D SCEDP D
Sbjct: 32  KRKSALVRSSIGAYAVQCEACLKWRLIDTEEEYEEIRSRFIEEPFVCSKKADVSCEDPTD 91

Query: 70  IDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEA 129
           I+YD TRTW  DKPN+PKTP+GF R LVLRK+F+K DAYY+TPTGK VR+ +E+ A++ +
Sbjct: 92  IEYDATRTWAADKPNVPKTPKGFQRDLVLRKDFSKMDAYYITPTGKKVRALSEIAAYLSS 151

Query: 130 NPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKN 176
           NP  KD++ S+F+F VPKIM +T+P  I ++   S S K+ KK++N
Sbjct: 152 NPDCKDLSPSDFNFMVPKIMADTIPAHIERKVSTSGSNKKRKKSEN 197

[Close]

BLAST of Cucsa.084840 vs. TAIR10
Match: AT3G63030.1 (AT3G63030.1 methyl-CPG-binding domain 4)

HSP 1 Score: 194.1 bits (492), Expect = 7.4e-50
Identity = 86/151 (56.95%), Postives = 114/151 (75.50%), Query Frame = 1


Query: 7   RPPKTPTKSTRLP---VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 66
           +P K   K    P   +  +AAQC+ C KWR+I +QEEYE IRSK++E+PF CQ+K   S
Sbjct: 9   KPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMS 68

Query: 67  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 126
           CE+P DIDYD++RTW IDKP +PKTP+GF R LVLRK+++K D YY TPTGK +RS  E+
Sbjct: 69  CEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEI 128

Query: 127 LAFVEANPQYKDIALSNFSFAVPKIMEETVP 155
            AFVEANP++++  L +F+F VPK+ME+TVP
Sbjct: 129 AAFVEANPEFRNAPLGDFNFTVPKVMEDTVP 159

[Close]

BLAST of Cucsa.084840 vs. TAIR10
Match: AT4G22745.1 (AT4G22745.1 methyl-CPG-binding domain 1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-47
Identity = 84/158 (53.16%), Postives = 113/158 (71.52%), Query Frame = 1


Query: 11  TPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPDI 70
           TP +S    + +FA QCE+C KWR I TQ+EYE IRS++ E+PF C+ K   SCED  D+
Sbjct: 47  TPGRS----IDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDL 106

Query: 71  DYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEAN 130
           +YD++RTW IDKP +P+TP GF R L+LRK+++K DAYY+TPTGK ++S  E+ AF++AN
Sbjct: 107 NYDSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDAN 166

Query: 131 PQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAK 169
             YK   L +F+F VPK+MEETVP  IL +     S K
Sbjct: 167 QDYKYALLGDFNFTVPKVMEETVPSGILSDRTPKPSRK 200

[Close]

BLAST of Cucsa.084840 vs. TAIR10
Match: AT5G35330.1 (AT5G35330.1 methyl-CPG-binding domain protein 02)

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-28
Identity = 62/140 (44.29%), Postives = 89/140 (63.57%), Query Frame = 1


Query: 20  VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTC----QRKTDTSCEDPPDIDYDTT 79
           +G F  QC  CFKWRL+ + ++YE IR +++E PF C    + K D SC+ P DI  D T
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 80  RTWGIDKPNIPKTPEGFTRRLVLR-KNFTKF-DAYYVTPTGKTVRSSTEVLAFVEANPQY 139
           R W IDKPNI + P G+ R L +R +  T+F D YYV P+GK +RS+ EV  ++  N +Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 140 --KDIALSNFSFAVPKIMEE 152
             + + LS FSF +PK +++
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

[Close]

BLAST of Cucsa.084840 vs. TAIR10
Match: AT4G00416.1 (AT4G00416.1 methyl-CPG-binding domain 3)

HSP 1 Score: 104.8 bits (260), Expect = 5.9e-23
Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 1


Query: 23  FAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPD--IDYDT-TRTWG 82
           +AAQC +C K R I +QE+YE IRSK +E+ F C+R     CE+P D  +++D+ T  W 
Sbjct: 12  YAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWF 71

Query: 83  IDKPNIPKTPEGFTRRLVLRKNFTKFDAYY--VTPTGKTVRSSTEVLAFVEANPQYKDIA 142
            D+ +IPKTP+G  R LV+R N  K D YY  + P  K  +S  EV  F+E   ++KD+ 
Sbjct: 72  QDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMT 131

Query: 143 LSNFSFAVPKIMEETVPESILKEGLNSSSAKR 170
           L   SFA PK ++      + K+ ++S S+ R
Sbjct: 132 LEEVSFAAPKRLK------LKKKPVDSHSSSR 152

[Close]

BLAST of Cucsa.084840 vs. TAIR10
Match: AT5G35338.2 (AT5G35338.2 methyl-CPG-binding domain 12)

HSP 1 Score: 87.4 bits (215), Expect = 9.7e-18
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 1


Query: 26  QCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT----DTSCEDPPDIDYDTTRTWGID 85
           QC +C KWRLI + + Y  I+   ++ PF C   +    + SC  P D    T  TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW--- 62

Query: 86  KPNIPKTPEGFTRRLVLRKNFTKF-DAYYVTPTGKTVRSSTEVLAFVEANPQY--KDIAL 145
            P+IP  P G++R + +R   TKF D YY  P+G+ +RSS EV +F++ +P+Y  + +  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 146 SNFSFAVPKIMEE 152
           S FSF +PK +++
Sbjct: 123 SQFSFQIPKPLDD 129

[Close]

BLAST of Cucsa.084840 vs. NCBI nr
Match: gi|449462288|ref|XP_004148873.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis sativus])

HSP 1 Score: 370.5 bits (950), Expect = 1.6e-99
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1


Query: 1   MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT 60
           MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT
Sbjct: 1   MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT 60

Query: 61  DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS 120
           DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS
Sbjct: 61  DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS 120

Query: 121 TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT 180
           TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT
Sbjct: 121 TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of Cucsa.084840 vs. NCBI nr
Match: gi|659101067|ref|XP_008451407.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 344.0 bits (881), Expect = 1.6e-91
Identity = 166/179 (92.74%), Postives = 173/179 (96.65%), Query Frame = 1


Query: 3   AAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDT 62
           AAA RPPKTP KSTR+PV LFA QCEECFKWRLISTQEEYE IRS++IEEPFTCQRKTDT
Sbjct: 2   AAAARPPKTPIKSTRVPVSLFAVQCEECFKWRLISTQEEYEDIRSRMIEEPFTCQRKTDT 61

Query: 63  SCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTE 122
           SCEDPPDI+YDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRS TE
Sbjct: 62  SCEDPPDINYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSPTE 121

Query: 123 VLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE 182
           +LAFV+ANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESA+TE
Sbjct: 122 ILAFVQANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAYTE 180

[Close]

BLAST of Cucsa.084840 vs. NCBI nr
Match: gi|902240303|gb|KNA25962.1| (hypothetical protein SOVF_001680 [Spinacia oleracea])

HSP 1 Score: 210.7 bits (535), Expect = 2.2e-51
Identity = 99/171 (57.89%), Postives = 131/171 (76.61%), Query Frame = 1


Query: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63
           A+ + P+T T +    +GL+A QC ECFKWRLIS +EEYE IRSK++EEPFTC +K D S
Sbjct: 31  ASSKKPQTGTNT----IGLYAVQCGECFKWRLISNEEEYEVIRSKLLEEPFTCSKKPDAS 90

Query: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123
           C DP DI+ D TRTW IDKPNIP+TP GF R+LVLR++F+K DA+YVTPTGK VRSSTEV
Sbjct: 91  CNDPADIEKDATRTWVIDKPNIPRTPVGFKRKLVLRRDFSKLDAHYVTPTGKKVRSSTEV 150

Query: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTK 175
             ++E NP+ K ++++ FSF VPK++EET+P+ I ++     SAK+ K +K
Sbjct: 151 AKYLEENPEVKGVSVNEFSFTVPKVVEETIPKDIERK----PSAKKAKDSK 193

[Close]

BLAST of Cucsa.084840 vs. NCBI nr
Match: gi|567903344|ref|XP_006444160.1| (hypothetical protein CICLE_v10022348mg [Citrus clementina])

HSP 1 Score: 209.9 bits (533), Expect = 3.7e-51
Identity = 97/171 (56.73%), Postives = 126/171 (73.68%), Query Frame = 1


Query: 9   PKTPTKSTR------LPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDT 68
           PKT +K  R        +  +AAQCE+CFKWR+I++ EEYE IR KI E PF C RK   
Sbjct: 8   PKTASKKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGV 67

Query: 69  SCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTE 128
           SCEDP DI+YD +R W ID+P IPKTP GF R LVLRK+F+K DAYY+TPTGK +R+  E
Sbjct: 68  SCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNE 127

Query: 129 VLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKT 174
           V  F+ ANP+Y D++LS+F+F+VPK+M++T+PE ++K+G  SS AKR  KT
Sbjct: 128 VAGFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKT 178

[Close]

BLAST of Cucsa.084840 vs. NCBI nr
Match: gi|147788831|emb|CAN77824.1| (hypothetical protein VITISV_015457 [Vitis vinifera])

HSP 1 Score: 208.8 bits (530), Expect = 8.2e-51
Identity = 94/166 (56.63%), Postives = 123/166 (74.10%), Query Frame = 1


Query: 10  KTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPD 69
           K  +   R  +G +A QCE C KWRLI T+EEYE IRS+ IEEPF C +K D SCEDP D
Sbjct: 32  KRKSALVRSSIGAYAVQCEACLKWRLIDTEEEYEEIRSRFIEEPFVCSKKADVSCEDPTD 91

Query: 70  IDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEA 129
           I+YD TRTW  DKPN+PKTP+GF R LVLRK+F+K DAYY+TPTGK VR+ +E+ A++ +
Sbjct: 92  IEYDATRTWAADKPNVPKTPKGFQRDLVLRKDFSKMDAYYITPTGKKVRALSEIAAYLSS 151

Query: 130 NPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKN 176
           NP  KD++ S+F+F VPKIM +T+P  I ++   S S K+ KK++N
Sbjct: 152 NPDCKDLSPSDFNFMVPKIMADTIPAHIERKVSTSGSNKKRKKSEN 197

The following BLAST results are available for this feature:

BLAST of Cucsa.084840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MBD4_ARATH	1.3e-48	56.95	Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 P...	[more]
MBD1_ARATH	4.7e-46	53.16	Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=MBD1 P...	[more]
MBD2_ARATH	2.8e-27	44.29	Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 P...	[more]
MBD3_ARATH	1.0e-21	40.79	Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=MBD3 P...	[more]
MBD12_ARATH	1.7e-16	36.84	Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana GN=MBD12 P...	[more]

BLAST of Cucsa.084840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K900_CUCSA	1.1e-99	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G391290 PE=4 SV=1	[more]
A0A0K9S4A0_SPIOL	1.5e-51	57.89	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_001680 PE=4 SV=1	[more]
V4U041_9ROSI	2.6e-51	56.73	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022348mg PE=4 SV=1	[more]
D7TP90_VITVI	5.7e-51	56.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00770 PE=4 SV=...	[more]
A5ADK3_VITVI	5.7e-51	56.63	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015457 PE=4 SV=1	[more]

BLAST of Cucsa.084840 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G63030.1	7.4e-50	56.95	methyl-CPG-binding domain 4	[more]
AT4G22745.1	2.6e-47	53.16	methyl-CPG-binding domain 1	[more]
AT5G35330.1	1.6e-28	44.29	methyl-CPG-binding domain protein 02	[more]
AT4G00416.1	5.9e-23	40.79	methyl-CPG-binding domain 3	[more]
AT5G35338.2	9.7e-18	36.84	methyl-CPG-binding domain 12	[more]

BLAST of Cucsa.084840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462288\|ref\|XP_004148873.1\|	1.6e-99	100.00	PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis sativus]	[more]
gi\|659101067\|ref\|XP_008451407.1\|	1.6e-91	92.74	PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo]	[more]
gi\|902240303\|gb\|KNA25962.1\|	2.2e-51	57.89	hypothetical protein SOVF_001680 [Spinacia oleracea]	[more]
gi\|567903344\|ref\|XP_006444160.1\|	3.7e-51	56.73	hypothetical protein CICLE_v10022348mg [Citrus clementina]	[more]
gi\|147788831\|emb\|CAN77824.1\|	8.2e-51	56.63	hypothetical protein VITISV_015457 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001739	Methyl_CpG_DNA-bd
IPR011124	Znf_CW
IPR016177	DNA-bd_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0008270	zinc ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.084840.1	Cucsa.084840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	GENE3D	G3DSA:3.30.890.10		coord: 53..173 score: 1.9
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 87..149 score: 1.5
IPR001739	Methyl-CpG DNA binding	SMART	SM00391	TAM_2	coord: 80..153 score: 6.
IPR001739	Methyl-CpG DNA binding	PROFILE	PS50982	MBD	coord: 78..148 score: 13
IPR011124	Zinc finger, CW-type	PFAM	PF07496	zf-CW	coord: 24..69 score: 3.3
IPR011124	Zinc finger, CW-type	PROFILE	PS51050	ZF_CW	coord: 17..72 score: 11
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 60..153 score: 1.18
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 20..172 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.084840	Cla014729	Watermelon (97103) v1	cgywmB092
Cucsa.084840	Csa7G391290	Cucumber (Chinese Long) v2	cgycuB085
Cucsa.084840	MELO3C015875	Melon (DHL92) v3.5.1	cgymeB094
Cucsa.084840	ClCG09G006740	Watermelon (Charleston Gray)	cgywcgB090
Cucsa.084840	CSPI07G16700	Wild cucumber (PI 183967)	cgycpiB088
Cucsa.084840	CmaCh17G011500	Cucurbita maxima (Rimu)	cgycmaB0156
Cucsa.084840	CmaCh08G003710	Cucurbita maxima (Rimu)	cgycmaB0159
Cucsa.084840	CmoCh08G003660	Cucurbita moschata (Rifu)	cgycmoB0154
Cucsa.084840	CmoCh17G011260	Cucurbita moschata (Rifu)	cgycmoB0151
Cucsa.084840	Lsi02G023260	Bottle gourd (USVL1VR-Ls)	cgylsiB090
Cucsa.084840	Cp4.1LG17g06780	Cucurbita pepo (Zucchini)	cgycpeB0152
Cucsa.084840	Cp4.1LG12g11910	Cucurbita pepo (Zucchini)	cgycpeB0150
Cucsa.084840	MELO3C015875.2	Melon (DHL92) v3.6.1	cgymedB092
Cucsa.084840	CsaV3_7G028470	Cucumber (Chinese Long) v3	cgycucB087
Cucsa.084840	Cla97C09G169310	Watermelon (97103) v2	cgywmbB088
Cucsa.084840	Bhi09G000828	Wax gourd	cgywgoB103
Cucsa.084840	Carg22180	Silver-seed gourd	carcgyB0980

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.084840	Melon (DHL92) v3.5.1	cgymeB093
Cucsa.084840	Bottle gourd (USVL1VR-Ls)	cgylsiB091
Cucsa.084840	Silver-seed gourd	carcgyB0128