CsaV3_7G028470 (gene) Cucumber (Chinese Long) v3

NameCsaV3_7G028470
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionmethyl-CpG-binding domain-containing protein 4
Locationchr7 : 17959166 .. 17961276 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACCTTCTTCCGGAAAGATTAATAAATTTTTCTTTAAAGCACAATTTACTATTAAGATTTGTTATTAGAGATCACGCCATAGACGAGGCGAAATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGGTACGCCGGAAACTCTATTCTCTTCCTCCAATTTATTCTTTATATCCTACATGGTTTCCTCTTTATCGGATTCATTCAATAATTTCAATTATCTCTCATTTGCGTTCTGGGGAACTGTAACCCTTAAATTCTGAAGATTGGAAAATACGGCCTAAGTAAATTGATGCTGTTTGGAGCTGGTTACGCCTTTGTTTTCCTCGTTTAGCGAGTACTGCGAAGTTTCACGGTGCATAGGGAAAATTTATTGAATGTGGCTATAATCAAGGGTGCGTAATTATCGGTTACATTGAAGCAGTCTCCTGCAATAATTTCTTGGAAATAGGAAAGTTGAATGGGGAGATAATTAGTTGAGTTTTGCTTAATTATGGAAAAAGGAGGTTTAATTGAACTTGATATTGGTTTGTAGGTCCATCTGTTGTGTGAGAATTAATGCTCATTTAAACATAATCTTAAAGAAATTCATCAAAGTTCAAGTTCGTTAAAATATTTGTTGGCAGTGGCTGTGGGGAAGTTATTATGAAATTCAACGTCAGCTATTCTGGGACACTCATTTTTATTATAGTTTCTTGAAGTTTTAAAGTGAAACTCAGAGGTTCGATGCTTCTTTGTGGGCATTGGTCACTAGGAATTTTTGTAATTATGTCATTGATCTTGTTAGTTTGGGCTCGAGAACATTTTGTAGTTAGTGGAGGACACATACTTCTTTACGGCTTATTCTTTATATTGTTCTTGTATTCTTTATTTGTTTTACTCAAACAGAAGTGAAAGTTAGAGATGGAAGTGAATTTCTGAGTCTCATGTGTTTACCGATTGGATTTCTTTAAGTGTAACTCTTACAACTTTTCATTTAATACTTGAAAGGATCTTCTTTTATTGTCGCGTTGATTGTTCCAACTATAAAAAAGAAGTCCATCTAAGTTATTAGAAGCCTCTTTTGGTGTAATCTAAGGTGTTATTGGTTTCTGTTTACAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGAAAATCACTAGGGATTTGCTCGTAGCATTCTATTGTTGATCTTAACCCTTGTGAATGATTTGATATTGTGCCGAAAGATGTAGAATGATGATTCTCCACTATTGTTTGTACCATTTTCTTGTTCACTTATGAGGAGAGTTGGGGTATATGGTATCATATTGCCATGTTTGATGACTGTCTGAAGATTGTTGGACTGAGTGAATTTGGTGACAGCAATGAGCAGTGACAAATATCTAGGAAAAATAATCCATTTTATCCCATAAACATAGTAAATGGTAGGTAAGAATGGAGGATGATTAGGTGCGACATCTCATGAAAATTCCTCGTTAGTTTACTTGGTTGCTCTTTTTCTAACTCTGTGTATTGAACATTTATTATTTTAGATTATTTTTAAATATAGCAAAATGATCCAAATTTATCTATAATAGATCAAGTATGTCTATTTGTATTTATCACAAATAAATTTTGATATTTTGTTATAGATCGTAAATATTTTCAAAA

mRNA sequence

ATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGA

Coding sequence (CDS)

ATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGA

Protein sequence

MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE
BLAST of CsaV3_7G028470 vs. NCBI nr
Match: XP_004148873.1 (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis sativus] >KGN44852.1 hypothetical protein Csa_7G391290 [Cucumis sativus])

HSP 1 Score: 366.7 bits (940), Expect = 4.6e-98
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0

Query: 1   MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT 60
           MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT
Sbjct: 1   MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT 60

Query: 61  DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS 120
           DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS
Sbjct: 61  DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS 120

Query: 121 TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT 180
           TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT
Sbjct: 121 TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT 180

Query: 181 E 182
           E
Sbjct: 181 E 181

BLAST of CsaV3_7G028470 vs. NCBI nr
Match: XP_008451407.1 (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 340.1 bits (871), Expect = 4.6e-90
Identity = 166/179 (92.74%), Postives = 173/179 (96.65%), Query Frame = 0

Query: 3   AAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDT 62
           AAA RPPKTP KSTR+PV LFA QCEECFKWRLISTQEEYE IRS++IEEPFTCQRKTDT
Sbjct: 2   AAAARPPKTPIKSTRVPVSLFAVQCEECFKWRLISTQEEYEDIRSRMIEEPFTCQRKTDT 61

Query: 63  SCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTE 122
           SCEDPPDI+YDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRS TE
Sbjct: 62  SCEDPPDINYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSPTE 121

Query: 123 VLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE 182
           +LAFV+ANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESA+TE
Sbjct: 122 ILAFVQANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAYTE 180

BLAST of CsaV3_7G028470 vs. NCBI nr
Match: XP_022953528.1 (methyl-CpG-binding domain-containing protein 4-like [Cucurbita moschata])

HSP 1 Score: 306.6 bits (784), Expect = 5.6e-80
Identity = 145/178 (81.46%), Postives = 165/178 (92.70%), Query Frame = 0

Query: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63
           AA RP +TP KSTRLPVGL+AAQCEECFKWRLISTQEEYE IRSK+IEEPFTC RKTDTS
Sbjct: 2   AAARPTRTPMKSTRLPVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTS 61

Query: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123
           C+DPPDI+YD TRTWGIDKPNIPKTPEGFTR LV+RKNF+KFDAYYVTPTGKTVRS TE+
Sbjct: 62  CKDPPDIEYDATRTWGIDKPNIPKTPEGFTRHLVVRKNFSKFDAYYVTPTGKTVRSPTEM 121

Query: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE 182
            AF+ ANP++KD+ L++FSF +P++MEETVPESILKEGL+SSSAKRIKKTK+E AHT+
Sbjct: 122 QAFLGANPRHKDVPLTDFSFTIPRLMEETVPESILKEGLDSSSAKRIKKTKDEFAHTD 179

BLAST of CsaV3_7G028470 vs. NCBI nr
Match: XP_023547930.1 (methyl-CpG-binding domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 1.6e-79
Identity = 144/178 (80.90%), Postives = 164/178 (92.13%), Query Frame = 0

Query: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63
           AA RP +TP KSTRLPVGL+AAQCEECFKWRLISTQEEYE IRSK+IEEPFTC RKTDTS
Sbjct: 2   AAARPTRTPMKSTRLPVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCHRKTDTS 61

Query: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123
           C+DPPDI+YD TRTWGIDKPNIPKTPEGFTR LV+RKNF+KFDAYYVTPTGKTVRS TE+
Sbjct: 62  CKDPPDIEYDATRTWGIDKPNIPKTPEGFTRHLVVRKNFSKFDAYYVTPTGKTVRSPTEM 121

Query: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE 182
            AF+ ANP++KD+ L++FSF +P++MEETVPESILKEGL+SSSAKR KKTK+E AHT+
Sbjct: 122 QAFLGANPRHKDVPLTDFSFTIPRLMEETVPESILKEGLDSSSAKRFKKTKDEFAHTD 179

BLAST of CsaV3_7G028470 vs. NCBI nr
Match: XP_022150154.1 (methyl-CpG-binding domain-containing protein 4-like [Momordica charantia])

HSP 1 Score: 301.2 bits (770), Expect = 2.4e-78
Identity = 145/178 (81.46%), Postives = 161/178 (90.45%), Query Frame = 0

Query: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63
           A  RPP+ P KS RLPV L+AAQCEECFKWRLISTQEEYE IRSK+IEEPFTC RKTDTS
Sbjct: 27  AGARPPRKPVKSKRLPVDLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCNRKTDTS 86

Query: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123
           CED  DIDYD TRTW IDKPNIPKTPEGF RRLVLRK+F+KFDAYY+TPTGKTVRSSTE+
Sbjct: 87  CEDASDIDYDATRTWVIDKPNIPKTPEGFKRRLVLRKDFSKFDAYYITPTGKTVRSSTEM 146

Query: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE 182
           L+F+EANP+YKDI LS FSFAVPK+MEETVPESIL+E L+SSSAKRIKK K++SAHT+
Sbjct: 147 LSFIEANPKYKDIPLSKFSFAVPKVMEETVPESILREDLSSSSAKRIKKVKDKSAHTD 204

BLAST of CsaV3_7G028470 vs. TAIR10
Match: AT3G63030.1 (methyl-CPG-binding domain 4)

HSP 1 Score: 192.6 bits (488), Expect = 2.1e-49
Identity = 86/151 (56.95%), Postives = 114/151 (75.50%), Query Frame = 0

Query: 7   RPPKTPTKSTRLP---VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 66
           +P K   K    P   +  +AAQC+ C KWR+I +QEEYE IRSK++E+PF CQ+K   S
Sbjct: 9   KPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMS 68

Query: 67  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 126
           CE+P DIDYD++RTW IDKP +PKTP+GF R LVLRK+++K D YY TPTGK +RS  E+
Sbjct: 69  CEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEI 128

Query: 127 LAFVEANPQYKDIALSNFSFAVPKIMEETVP 155
            AFVEANP++++  L +F+F VPK+ME+TVP
Sbjct: 129 AAFVEANPEFRNAPLGDFNFTVPKVMEDTVP 159

BLAST of CsaV3_7G028470 vs. TAIR10
Match: AT4G22745.1 (methyl-CPG-binding domain 1)

HSP 1 Score: 184.1 bits (466), Expect = 7.6e-47
Identity = 84/158 (53.16%), Postives = 113/158 (71.52%), Query Frame = 0

Query: 11  TPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPDI 70
           TP +S    + +FA QCE+C KWR I TQ+EYE IRS++ E+PF C+ K   SCED  D+
Sbjct: 47  TPGRS----IDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDL 106

Query: 71  DYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEAN 130
           +YD++RTW IDKP +P+TP GF R L+LRK+++K DAYY+TPTGK ++S  E+ AF++AN
Sbjct: 107 NYDSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDAN 166

Query: 131 PQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAK 169
             YK   L +F+F VPK+MEETVP  IL +     S K
Sbjct: 167 QDYKYALLGDFNFTVPKVMEETVPSGILSDRTPKPSRK 200

BLAST of CsaV3_7G028470 vs. TAIR10
Match: AT5G35330.1 (methyl-CPG-binding domain protein 02)

HSP 1 Score: 122.5 bits (306), Expect = 2.7e-28
Identity = 62/140 (44.29%), Postives = 89/140 (63.57%), Query Frame = 0

Query: 20  VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTC----QRKTDTSCEDPPDIDYDTT 79
           +G F  QC  CFKWRL+ + ++YE IR +++E PF C    + K D SC+ P DI  D T
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 80  RTWGIDKPNIPKTPEGFTRRLVLR-KNFTKF-DAYYVTPTGKTVRSSTEVLAFVEANPQY 139
           R W IDKPNI + P G+ R L +R +  T+F D YYV P+GK +RS+ EV  ++  N +Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 140 --KDIALSNFSFAVPKIMEE 152
             + + LS FSF +PK +++
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

BLAST of CsaV3_7G028470 vs. TAIR10
Match: AT4G00416.1 (methyl-CPG-binding domain 3)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-22
Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 0

Query: 23  FAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPD--IDYDT-TRTWG 82
           +AAQC +C K R I +QE+YE IRSK +E+ F C+R     CE+P D  +++D+ T  W 
Sbjct: 12  YAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWF 71

Query: 83  IDKPNIPKTPEGFTRRLVLRKNFTKFDAYY--VTPTGKTVRSSTEVLAFVEANPQYKDIA 142
            D+ +IPKTP+G  R LV+R N  K D YY  + P  K  +S  EV  F+E   ++KD+ 
Sbjct: 72  QDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMT 131

Query: 143 LSNFSFAVPKIMEETVPESILKEGLNSSSAKR 170
           L   SFA PK ++      + K+ ++S S+ R
Sbjct: 132 LEEVSFAAPKRLK------LKKKPVDSHSSSR 152

BLAST of CsaV3_7G028470 vs. TAIR10
Match: AT5G35338.2 (methyl-CPG-binding domain 12)

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-17
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 0

Query: 26  QCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT----DTSCEDPPDIDYDTTRTWGID 85
           QC +C KWRLI + + Y  I+   ++ PF C   +    + SC  P   D  T  TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQ--DGTTCDTW--- 62

Query: 86  KPNIPKTPEGFTRRLVLRKNFTKF-DAYYVTPTGKTVRSSTEVLAFVEANPQY--KDIAL 145
            P+IP  P G++R + +R   TKF D YY  P+G+ +RSS EV +F++ +P+Y  + +  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 146 SNFSFAVPKIMEE 152
           S FSF +PK +++
Sbjct: 123 SQFSFQIPKPLDD 129

BLAST of CsaV3_7G028470 vs. Swiss-Prot
Match: sp|Q9LYB9|MBD4_ARATH (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=MBD4 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.9e-48
Identity = 86/151 (56.95%), Postives = 114/151 (75.50%), Query Frame = 0

Query: 7   RPPKTPTKSTRLP---VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 66
           +P K   K    P   +  +AAQC+ C KWR+I +QEEYE IRSK++E+PF CQ+K   S
Sbjct: 9   KPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMS 68

Query: 67  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 126
           CE+P DIDYD++RTW IDKP +PKTP+GF R LVLRK+++K D YY TPTGK +RS  E+
Sbjct: 69  CEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEI 128

Query: 127 LAFVEANPQYKDIALSNFSFAVPKIMEETVP 155
            AFVEANP++++  L +F+F VPK+ME+TVP
Sbjct: 129 AAFVEANPEFRNAPLGDFNFTVPKVMEDTVP 159

BLAST of CsaV3_7G028470 vs. Swiss-Prot
Match: sp|Q5XEN5|MBD1_ARATH (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=MBD1 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-45
Identity = 84/158 (53.16%), Postives = 113/158 (71.52%), Query Frame = 0

Query: 11  TPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPDI 70
           TP +S    + +FA QCE+C KWR I TQ+EYE IRS++ E+PF C+ K   SCED  D+
Sbjct: 47  TPGRS----IDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDL 106

Query: 71  DYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEAN 130
           +YD++RTW IDKP +P+TP GF R L+LRK+++K DAYY+TPTGK ++S  E+ AF++AN
Sbjct: 107 NYDSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDAN 166

Query: 131 PQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAK 169
             YK   L +F+F VPK+MEETVP  IL +     S K
Sbjct: 167 QDYKYALLGDFNFTVPKVMEETVPSGILSDRTPKPSRK 200

BLAST of CsaV3_7G028470 vs. Swiss-Prot
Match: sp|Q8LA53|MBD2_ARATH (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=MBD2 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.9e-27
Identity = 62/140 (44.29%), Postives = 89/140 (63.57%), Query Frame = 0

Query: 20  VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTC----QRKTDTSCEDPPDIDYDTT 79
           +G F  QC  CFKWRL+ + ++YE IR +++E PF C    + K D SC+ P DI  D T
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 80  RTWGIDKPNIPKTPEGFTRRLVLR-KNFTKF-DAYYVTPTGKTVRSSTEVLAFVEANPQY 139
           R W IDKPNI + P G+ R L +R +  T+F D YYV P+GK +RS+ EV  ++  N +Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 140 --KDIALSNFSFAVPKIMEE 152
             + + LS FSF +PK +++
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

BLAST of CsaV3_7G028470 vs. Swiss-Prot
Match: sp|Q4PSK1|MBD3_ARATH (Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=MBD3 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-21
Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 0

Query: 23  FAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPD--IDYDT-TRTWG 82
           +AAQC +C K R I +QE+YE IRSK +E+ F C+R     CE+P D  +++D+ T  W 
Sbjct: 12  YAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWF 71

Query: 83  IDKPNIPKTPEGFTRRLVLRKNFTKFDAYY--VTPTGKTVRSSTEVLAFVEANPQYKDIA 142
            D+ +IPKTP+G  R LV+R N  K D YY  + P  K  +S  EV  F+E   ++KD+ 
Sbjct: 72  QDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMT 131

Query: 143 LSNFSFAVPKIMEETVPESILKEGLNSSSAKR 170
           L   SFA PK ++      + K+ ++S S+ R
Sbjct: 132 LEEVSFAAPKRLK------LKKKPVDSHSSSR 152

BLAST of CsaV3_7G028470 vs. Swiss-Prot
Match: sp|Q9FZP6|MBD12_ARATH (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN=MBD12 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.1e-16
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 0

Query: 26  QCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT----DTSCEDPPDIDYDTTRTWGID 85
           QC +C KWRLI + + Y  I+   ++ PF C   +    + SC  P   D  T  TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQ--DGTTCDTW--- 62

Query: 86  KPNIPKTPEGFTRRLVLRKNFTKF-DAYYVTPTGKTVRSSTEVLAFVEANPQY--KDIAL 145
            P+IP  P G++R + +R   TKF D YY  P+G+ +RSS EV +F++ +P+Y  + +  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 146 SNFSFAVPKIMEE 152
           S FSF +PK +++
Sbjct: 123 SQFSFQIPKPLDD 129

BLAST of CsaV3_7G028470 vs. TrEMBL
Match: tr|A0A0A0K900|A0A0A0K900_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G391290 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 3.0e-98
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0

Query: 1   MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT 60
           MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT
Sbjct: 1   MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT 60

Query: 61  DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS 120
           DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS
Sbjct: 61  DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS 120

Query: 121 TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT 180
           TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT
Sbjct: 121 TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT 180

Query: 181 E 182
           E
Sbjct: 181 E 181

BLAST of CsaV3_7G028470 vs. TrEMBL
Match: tr|A0A1S3BRE2|A0A1S3BRE2_CUCME (methyl-CpG-binding domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103492710 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 3.0e-90
Identity = 166/179 (92.74%), Postives = 173/179 (96.65%), Query Frame = 0

Query: 3   AAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDT 62
           AAA RPPKTP KSTR+PV LFA QCEECFKWRLISTQEEYE IRS++IEEPFTCQRKTDT
Sbjct: 2   AAAARPPKTPIKSTRVPVSLFAVQCEECFKWRLISTQEEYEDIRSRMIEEPFTCQRKTDT 61

Query: 63  SCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTE 122
           SCEDPPDI+YDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRS TE
Sbjct: 62  SCEDPPDINYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSPTE 121

Query: 123 VLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE 182
           +LAFV+ANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESA+TE
Sbjct: 122 ILAFVQANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAYTE 180

BLAST of CsaV3_7G028470 vs. TrEMBL
Match: tr|V4U041|V4U041_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022348mg PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.4e-50
Identity = 97/171 (56.73%), Postives = 126/171 (73.68%), Query Frame = 0

Query: 9   PKTPTKSTR------LPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDT 68
           PKT +K  R        +  +AAQCE+CFKWR+I++ EEYE IR KI E PF C RK   
Sbjct: 8   PKTASKKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGV 67

Query: 69  SCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTE 128
           SCEDP DI+YD +R W ID+P IPKTP GF R LVLRK+F+K DAYY+TPTGK +R+  E
Sbjct: 68  SCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNE 127

Query: 129 VLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKT 174
           V  F+ ANP+Y D++LS+F+F+VPK+M++T+PE ++K+G  SS AKR  KT
Sbjct: 128 VAGFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKT 178

BLAST of CsaV3_7G028470 vs. TrEMBL
Match: tr|A0A2H5NL49|A0A2H5NL49_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_054540 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.4e-50
Identity = 97/171 (56.73%), Postives = 126/171 (73.68%), Query Frame = 0

Query: 9   PKTPTKSTR------LPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDT 68
           PKT +K  R        +  +AAQCE+CFKWR+I++ EEYE IR KI E PF C RK   
Sbjct: 8   PKTASKKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGV 67

Query: 69  SCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTE 128
           SCEDP DI+YD +R W ID+P IPKTP GF R LVLRK+F+K DAYY+TPTGK +R+  E
Sbjct: 68  SCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNE 127

Query: 129 VLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKT 174
           V  F+ ANP+Y D++LS+F+F+VPK+M++T+PE ++K+G  SS AKR  KT
Sbjct: 128 VAGFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKT 178

BLAST of CsaV3_7G028470 vs. TrEMBL
Match: tr|A0A0K9S4A0|A0A0K9S4A0_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_001680 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50
Identity = 99/171 (57.89%), Postives = 131/171 (76.61%), Query Frame = 0

Query: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63
           A+ + P+T T +    +GL+A QC ECFKWRLIS +EEYE IRSK++EEPFTC +K D S
Sbjct: 31  ASSKKPQTGTNT----IGLYAVQCGECFKWRLISNEEEYEVIRSKLLEEPFTCSKKPDAS 90

Query: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123
           C DP DI+ D TRTW IDKPNIP+TP GF R+LVLR++F+K DA+YVTPTGK VRSSTEV
Sbjct: 91  CNDPADIEKDATRTWVIDKPNIPRTPVGFKRKLVLRRDFSKLDAHYVTPTGKKVRSSTEV 150

Query: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTK 175
             ++E NP+ K ++++ FSF VPK++EET+P+ I ++     SAK+ K +K
Sbjct: 151 AKYLEENPEVKGVSVNEFSFTVPKVVEETIPKDIERK----PSAKKAKDSK 193

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004148873.14.6e-98100.00PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis sativus] >KGN... [more]
XP_008451407.14.6e-9092.74PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo][more]
XP_022953528.15.6e-8081.46methyl-CpG-binding domain-containing protein 4-like [Cucurbita moschata][more]
XP_023547930.11.6e-7980.90methyl-CpG-binding domain-containing protein 4-like [Cucurbita pepo subsp. pepo][more]
XP_022150154.12.4e-7881.46methyl-CpG-binding domain-containing protein 4-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT3G63030.12.1e-4956.95methyl-CPG-binding domain 4[more]
AT4G22745.17.6e-4753.16methyl-CPG-binding domain 1[more]
AT5G35330.12.7e-2844.29methyl-CPG-binding domain protein 02[more]
AT4G00416.11.3e-2240.79methyl-CPG-binding domain 3[more]
AT5G35338.22.8e-1736.84methyl-CPG-binding domain 12[more]
Match NameE-valueIdentityDescription
sp|Q9LYB9|MBD4_ARATH3.9e-4856.95Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q5XEN5|MBD1_ARATH1.4e-4553.16Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q8LA53|MBD2_ARATH4.9e-2744.29Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q4PSK1|MBD3_ARATH2.4e-2140.79Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q9FZP6|MBD12_ARATH5.1e-1636.84Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0K900|A0A0A0K900_CUCSA3.0e-98100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G391290 PE=4 SV=1[more]
tr|A0A1S3BRE2|A0A1S3BRE2_CUCME3.0e-9092.74methyl-CpG-binding domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|V4U041|V4U041_9ROSI2.4e-5056.73Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022348mg PE=4 ... [more]
tr|A0A2H5NL49|A0A2H5NL49_CITUN2.4e-5056.73Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_054540 PE=4 SV=1[more]
tr|A0A0K9S4A0|A0A0K9S4A0_SPIOL3.1e-5057.89Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_001680 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom_sf
IPR011124Znf_CW
IPR001739Methyl_CpG_DNA-bd
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008327 methyl-CpG binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G028470.1CsaV3_7G028470.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001739Methyl-CpG DNA bindingSMARTSM00391TAM_2coord: 80..153
e-value: 6.6E-9
score: 45.6
IPR001739Methyl-CpG DNA bindingPFAMPF01429MBDcoord: 87..149
e-value: 1.5E-12
score: 46.9
IPR001739Methyl-CpG DNA bindingPROSITEPS50982MBDcoord: 78..148
score: 13.887
NoneNo IPR availableGENE3DG3DSA:3.30.890.10coord: 56..180
e-value: 1.1E-11
score: 46.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..181
NoneNo IPR availablePANTHERPTHR12396:SF7METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 2-RELATEDcoord: 25..150
NoneNo IPR availablePANTHERPTHR12396METHYL-CPG BINDING PROTEIN, MBDcoord: 25..150
NoneNo IPR availableCDDcd01396MeCP2_MBDcoord: 82..154
e-value: 6.35421E-20
score: 79.3389
IPR011124Zinc finger, CW-typePFAMPF07496zf-CWcoord: 24..69
e-value: 3.2E-10
score: 39.8
IPR011124Zinc finger, CW-typePROSITEPS51050ZF_CWcoord: 17..72
score: 11.638
IPR016177DNA-binding domain superfamilySUPERFAMILYSSF54171DNA-binding domaincoord: 60..153

The following gene(s) are paralogous to this gene:

None