CsaV3_7G028470 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GCACCTTCTTCCGGAAAGATTAATAAATTTTTCTTTAAAGCACAATTTACTATTAAGATTTGTTATTAGAGATCACGCCATAGACGAGGCGAAATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGGTACGCCGGAAACTCTATTCTCTTCCTCCAATTTATTCTTTATATCCTACATGGTTTCCTCTTTATCGGATTCATTCAATAATTTCAATTATCTCTCATTTGCGTTCTGGGGAACTGTAACCCTTAAATTCTGAAGATTGGAAAATACGGCCTAAGTAAATTGATGCTGTTTGGAGCTGGTTACGCCTTTGTTTTCCTCGTTTAGCGAGTACTGCGAAGTTTCACGGTGCATAGGGAAAATTTATTGAATGTGGCTATAATCAAGGGTGCGTAATTATCGGTTACATTGAAGCAGTCTCCTGCAATAATTTCTTGGAAATAGGAAAGTTGAATGGGGAGATAATTAGTTGAGTTTTGCTTAATTATGGAAAAAGGAGGTTTAATTGAACTTGATATTGGTTTGTAGGTCCATCTGTTGTGTGAGAATTAATGCTCATTTAAACATAATCTTAAAGAAATTCATCAAAGTTCAAGTTCGTTAAAATATTTGTTGGCAGTGGCTGTGGGGAAGTTATTATGAAATTCAACGTCAGCTATTCTGGGACACTCATTTTTATTATAGTTTCTTGAAGTTTTAAAGTGAAACTCAGAGGTTCGATGCTTCTTTGTGGGCATTGGTCACTAGGAATTTTTGTAATTATGTCATTGATCTTGTTAGTTTGGGCTCGAGAACATTTTGTAGTTAGTGGAGGACACATACTTCTTTACGGCTTATTCTTTATATTGTTCTTGTATTCTTTATTTGTTTTACTCAAACAGAAGTGAAAGTTAGAGATGGAAGTGAATTTCTGAGTCTCATGTGTTTACCGATTGGATTTCTTTAAGTGTAACTCTTACAACTTTTCATTTAATACTTGAAAGGATCTTCTTTTATTGTCGCGTTGATTGTTCCAACTATAAAAAAGAAGTCCATCTAAGTTATTAGAAGCCTCTTTTGGTGTAATCTAAGGTGTTATTGGTTTCTGTTTACAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGAAAATCACTAGGGATTTGCTCGTAGCATTCTATTGTTGATCTTAACCCTTGTGAATGATTTGATATTGTGCCGAAAGATGTAGAATGATGATTCTCCACTATTGTTTGTACCATTTTCTTGTTCACTTATGAGGAGAGTTGGGGTATATGGTATCATATTGCCATGTTTGATGACTGTCTGAAGATTGTTGGACTGAGTGAATTTGGTGACAGCAATGAGCAGTGACAAATATCTAGGAAAAATAATCCATTTTATCCCATAAACATAGTAAATGGTAGGTAAGAATGGAGGATGATTAGGTGCGACATCTCATGAAAATTCCTCGTTAGTTTACTTGGTTGCTCTTTTTCTAACTCTGTGTATTGAACATTTATTATTTTAGATTATTTTTAAATATAGCAAAATGATCCAAATTTATCTATAATAGATCAAGTATGTCTATTTGTATTTATCACAAATAAATTTTGATATTTTGTTATAGATCGTAAATATTTTCAAAA ATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGA ATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGA MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE
BLAST of CsaV3_7G028470 vs. NCBI nr
Match: XP_004148873.1 (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis sativus] >KGN44852.1 hypothetical protein Csa_7G391290 [Cucumis sativus]) HSP 1 Score: 366.7 bits (940), Expect = 4.6e-98 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. NCBI nr
Match: XP_008451407.1 (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo]) HSP 1 Score: 340.1 bits (871), Expect = 4.6e-90 Identity = 166/179 (92.74%), Postives = 173/179 (96.65%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. NCBI nr
Match: XP_022953528.1 (methyl-CpG-binding domain-containing protein 4-like [Cucurbita moschata]) HSP 1 Score: 306.6 bits (784), Expect = 5.6e-80 Identity = 145/178 (81.46%), Postives = 165/178 (92.70%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. NCBI nr
Match: XP_023547930.1 (methyl-CpG-binding domain-containing protein 4-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 305.1 bits (780), Expect = 1.6e-79 Identity = 144/178 (80.90%), Postives = 164/178 (92.13%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. NCBI nr
Match: XP_022150154.1 (methyl-CpG-binding domain-containing protein 4-like [Momordica charantia]) HSP 1 Score: 301.2 bits (770), Expect = 2.4e-78 Identity = 145/178 (81.46%), Postives = 161/178 (90.45%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. TAIR10
Match: AT3G63030.1 (methyl-CPG-binding domain 4) HSP 1 Score: 192.6 bits (488), Expect = 2.1e-49 Identity = 86/151 (56.95%), Postives = 114/151 (75.50%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. TAIR10
Match: AT4G22745.1 (methyl-CPG-binding domain 1) HSP 1 Score: 184.1 bits (466), Expect = 7.6e-47 Identity = 84/158 (53.16%), Postives = 113/158 (71.52%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. TAIR10
Match: AT5G35330.1 (methyl-CPG-binding domain protein 02) HSP 1 Score: 122.5 bits (306), Expect = 2.7e-28 Identity = 62/140 (44.29%), Postives = 89/140 (63.57%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. TAIR10
Match: AT4G00416.1 (methyl-CPG-binding domain 3) HSP 1 Score: 103.6 bits (257), Expect = 1.3e-22 Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. TAIR10
Match: AT5G35338.2 (methyl-CPG-binding domain 12) HSP 1 Score: 85.9 bits (211), Expect = 2.8e-17 Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. Swiss-Prot
Match: sp|Q9LYB9|MBD4_ARATH (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=MBD4 PE=1 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 3.9e-48 Identity = 86/151 (56.95%), Postives = 114/151 (75.50%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. Swiss-Prot
Match: sp|Q5XEN5|MBD1_ARATH (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=MBD1 PE=1 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 1.4e-45 Identity = 84/158 (53.16%), Postives = 113/158 (71.52%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. Swiss-Prot
Match: sp|Q8LA53|MBD2_ARATH (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=MBD2 PE=1 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 4.9e-27 Identity = 62/140 (44.29%), Postives = 89/140 (63.57%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. Swiss-Prot
Match: sp|Q4PSK1|MBD3_ARATH (Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=MBD3 PE=2 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 2.4e-21 Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. Swiss-Prot
Match: sp|Q9FZP6|MBD12_ARATH (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN=MBD12 PE=3 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 5.1e-16 Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. TrEMBL
Match: tr|A0A0A0K900|A0A0A0K900_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G391290 PE=4 SV=1) HSP 1 Score: 366.7 bits (940), Expect = 3.0e-98 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. TrEMBL
Match: tr|A0A1S3BRE2|A0A1S3BRE2_CUCME (methyl-CpG-binding domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103492710 PE=4 SV=1) HSP 1 Score: 340.1 bits (871), Expect = 3.0e-90 Identity = 166/179 (92.74%), Postives = 173/179 (96.65%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. TrEMBL
Match: tr|V4U041|V4U041_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022348mg PE=4 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 2.4e-50 Identity = 97/171 (56.73%), Postives = 126/171 (73.68%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. TrEMBL
Match: tr|A0A2H5NL49|A0A2H5NL49_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_054540 PE=4 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 2.4e-50 Identity = 97/171 (56.73%), Postives = 126/171 (73.68%), Query Frame = 0
BLAST of CsaV3_7G028470 vs. TrEMBL
Match: tr|A0A0K9S4A0|A0A0K9S4A0_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_001680 PE=4 SV=1) HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50 Identity = 99/171 (57.89%), Postives = 131/171 (76.61%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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