Csa7G391290 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G391290
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionMethyl binding domain protein; contains IPR011124 (Zinc finger, CW-type), IPR016177 (DNA-binding, integrase-type)
LocationChr7 : 14749516 .. 14751516 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTTTCTTTAAAGCACAATTTACTATTAAGATTTGTTATTAGAGATCACGCCATAGACGAGGCGAAATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGGTACGCCGGAAACTCTATTCTCTTCCTCCAATTTATTCTTTATATCCTACATGGTTTCCTCTTTATCGGATTCATTCAATAATTTCAATTATCTCTCATTTGCGTTCTGGGGAACTGTAACCCTTAAATTCTGAAGATTGGAAAATACGGCCTAAGTAAATTGATGCTGTTTGGAGCTGGTTACGCCTTTGTTTTCCTCGTTTAGCGAGTACTGCGAAGTTTCACGGTGCATAGGGAAAATTTATTGAATGTGGCTATAATCAAGGGTGCGTAATTATCGGTTACATTGAAGCAGTCTCCTGCAATAATTTCTTGGAAATAGGAAAGTTGAATGGGGAGATAATTAGTTGAGTTTTGCTTAATTATGGAAAAAGGAGGTTTAATTGAACTTGATATTGGTTTGTAGGTCCATCTGTTGTGTGAGAATTAATGCTCATTTAAACATAATCTTAAAGAAATTCATCAAAGTTCAAGTTCGTTAAAATATTTGTTGGCAGTGGCTGTGGGGAAGTTATTATGAAATTCAACGTCAGCTATTCTGGGACACTCATTTTTATTATAGTTTCTTGAAGTTTTAAAGTGAAACTCAGAGGTTCGATGCTTCTTTGTGGGCATTGGTCACTAGGAATTTTTGTAATTATGTCATTGATCTTGTTAGTTTGGGCTCGAGAACATTTTGTAGTTAGTGGAGGACACATACTTCTTTACGGCTTATTCTTTATATTGTTCTTGTATTCTTTATTTGTTTTACTCAAACAGAAGTGAAAGTTAGAGATGGAAGTGAATTTCTGAGTCTCATGTGTTTACCGATTGGATTTCTTTAAGTGTAACTCTTACAACTTTTCATTTAATACTTGAAAGGATCTTCTTTTATTGTCGCGTTGATTGTTCCAACTATAAAAAAGAAGTCCATCTAAGTTATTAGAAGCCTCTTTTGGTGTAATCTAAGGTGTTATTGGTTTCTGTTTACAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGAAAATCACTAGGGATTTGCTCGTAGCATTCTATTGTTGATCTTAACCCTTGTGAATGATTTGATATTGTGCCGAAAGATGTAGAATGATGATTCTCCACTATTGTTTGTACCATTTTCTTGTTCACTTATGAGGAGAGTTGGGGTATATGGTATCATATTGCCATGTTTGATGACTGTCTGAAGATTGTTGGACTGAGTGAATTTGGTGACAGCAATGAGCAGTGACAAATATCTAGGAAAAATAATCCATTTTATCCCATAAACATAGTAAATGGTAGGTAAGAATGGAGGATGATTAGGTGCGACATCTCATGAAAATTCCTCGTTAGTTTACTTGGTTGCTCTTTTTCTAACTCTGTGTATTGAACATTTATTATTTTAGATTATTTTTAAATATAGCAAAATGATCCAAATT

mRNA sequence

ATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGA

Coding sequence (CDS)

ATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGA

Protein sequence

MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE*
Homology
[Close]
BLAST of Csa7G391290 vs. Swiss-Prot
Match: MBD4_ARATH (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-48
Identity = 86/151 (56.95%), Postives = 112/151 (74.17%), Query Frame = 1 

Query: 7   RPPKTPTKSTRLP---VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 66
           +P K   K    P   +  +AAQC+ C KWR+I +QEEYE IRSK++E+PF CQ+K   S
Sbjct: 9   KPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMS 68

Query: 67  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 126
           CE+P DIDYD++RTW IDKP +PKTP+GF R LVLRK+++K D YY TPTGK +RS  E+
Sbjct: 69  CEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEI 128

Query: 127 LAFVEANPQYKDIALSNFSFAVPKIMEETVP 155
            AFVEANP++++  L +F+F VPK+ME+TVP
Sbjct: 129 AAFVEANPEFRNAPLGDFNFTVPKVMEDTVP 159

[Close]
BLAST of Csa7G391290 vs. Swiss-Prot
Match: MBD1_ARATH (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=MBD1 PE=2 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.7e-46
Identity = 84/158 (53.16%), Postives = 111/158 (70.25%), Query Frame = 1 

Query: 11  TPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPDI 70
           TP +S    + +FA QCE+C KWR I TQ+EYE IRS++ E+PF C+ K   SCED  D+
Sbjct: 47  TPGRS----IDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDL 106

Query: 71  DYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEAN 130
           +YD++RTW IDKP +P+TP GF R L+LRK+++K DAYY+TPTGK ++S  E+ AF++AN
Sbjct: 107 NYDSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDAN 166

Query: 131 PQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAK 169
             YK   L +F+F VPK+MEETVP  IL +     S K
Sbjct: 167 QDYKYALLGDFNFTVPKVMEETVPSGILSDRTPKPSRK 200

[Close]
BLAST of Csa7G391290 vs. Swiss-Prot
Match: MBD2_ARATH (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.8e-27
Identity = 62/140 (44.29%), Postives = 87/140 (62.14%), Query Frame = 1 

Query: 20  VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTC----QRKTDTSCEDPPDIDYDTT 79
           +G F  QC  CFKWRL+ + ++YE IR +++E PF C    + K D SC+ P DI  D T
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 80  RTWGIDKPNIPKTPEGFTRRLVLR-KNFTKF-DAYYVTPTGKTVRSSTEVLAFVEANPQY 139
           R W IDKPNI + P G+ R L +R +  T+F D YYV P+GK +RS+ EV  ++  N +Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 140 --KDIALSNFSFAVPKIMEE 152
             + + LS FSF +PK +++
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

[Close]
BLAST of Csa7G391290 vs. Swiss-Prot
Match: MBD3_ARATH (Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=MBD3 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-21
Identity = 62/152 (40.79%), Postives = 89/152 (58.55%), Query Frame = 1 

Query: 23  FAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPD--IDYDT-TRTWG 82
           +AAQC +C K R I +QE+YE IRSK +E+ F C+R     CE+P D  +++D+ T  W 
Sbjct: 12  YAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWF 71

Query: 83  IDKPNIPKTPEGFTRRLVLRKNFTKFDAYY--VTPTGKTVRSSTEVLAFVEANPQYKDIA 142
            D+ +IPKTP+G  R LV+R N  K D YY  + P  K  +S  EV  F+E   ++KD+ 
Sbjct: 72  QDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMT 131

Query: 143 LSNFSFAVPKIMEETVPESILKEGLNSSSAKR 170
           L   SFA PK ++      + K+ ++S S+ R
Sbjct: 132 LEEVSFAAPKRLK------LKKKPVDSHSSSR 152

[Close]
BLAST of Csa7G391290 vs. Swiss-Prot
Match: MBD12_ARATH (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana GN=MBD12 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-16
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 1 

Query: 26  QCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT----DTSCEDPPDIDYDTTRTWGID 85
           QC +C KWRLI + + Y  I+   ++ PF C   +    + SC  P D    T  TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW--- 62

Query: 86  KPNIPKTPEGFTRRLVLRKNFTKF-DAYYVTPTGKTVRSSTEVLAFVEANPQY--KDIAL 145
            P+IP  P G++R + +R   TKF D YY  P+G+ +RSS EV +F++ +P+Y  + +  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 146 SNFSFAVPKIMEE 152
           S FSF +PK +++
Sbjct: 123 SQFSFQIPKPLDD 129

[Close]
BLAST of Csa7G391290 vs. TrEMBL
Match: A0A0A0K900_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G391290 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.1e-99
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1 

Query: 1   MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT 60
           MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT
Sbjct: 1   MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT 60

Query: 61  DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS 120
           DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS
Sbjct: 61  DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS 120

Query: 121 TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT 180
           TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT
Sbjct: 121 TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]
BLAST of Csa7G391290 vs. TrEMBL
Match: A0A0K9S4A0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_001680 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-51
Identity = 99/171 (57.89%), Postives = 131/171 (76.61%), Query Frame = 1 

Query: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63
           A+ + P+T T +    +GL+A QC ECFKWRLIS +EEYE IRSK++EEPFTC +K D S
Sbjct: 31  ASSKKPQTGTNT----IGLYAVQCGECFKWRLISNEEEYEVIRSKLLEEPFTCSKKPDAS 90

Query: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123
           C DP DI+ D TRTW IDKPNIP+TP GF R+LVLR++F+K DA+YVTPTGK VRSSTEV
Sbjct: 91  CNDPADIEKDATRTWVIDKPNIPRTPVGFKRKLVLRRDFSKLDAHYVTPTGKKVRSSTEV 150

Query: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTK 175
             ++E NP+ K ++++ FSF VPK++EET+P+ I ++     SAK+ K +K
Sbjct: 151 AKYLEENPEVKGVSVNEFSFTVPKVVEETIPKDIERK----PSAKKAKDSK 193

[Close]
BLAST of Csa7G391290 vs. TrEMBL
Match: V4U041_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022348mg PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.6e-51
Identity = 97/171 (56.73%), Postives = 126/171 (73.68%), Query Frame = 1 

Query: 9   PKTPTKSTR------LPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDT 68
           PKT +K  R        +  +AAQCE+CFKWR+I++ EEYE IR KI E PF C RK   
Sbjct: 8   PKTASKKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGV 67

Query: 69  SCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTE 128
           SCEDP DI+YD +R W ID+P IPKTP GF R LVLRK+F+K DAYY+TPTGK +R+  E
Sbjct: 68  SCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNE 127

Query: 129 VLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKT 174
           V  F+ ANP+Y D++LS+F+F+VPK+M++T+PE ++K+G  SS AKR  KT
Sbjct: 128 VAGFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKT 178

[Close]
BLAST of Csa7G391290 vs. TrEMBL
Match: A9PE20_POPTR (Methyl-CpG-binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s13300g PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.7e-51
Identity = 93/179 (51.96%), Postives = 132/179 (73.74%), Query Frame = 1 

Query: 3   AAADRPPKTPTKSTRLP------VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTC 62
           A  +R P+TP  S++ P      +  +AAQC++C KWR+I+T+EEYE IRSK+ E PF C
Sbjct: 2   ALKERSPETPKTSSKNPRVAVRSIDTYAAQCDKCLKWRVIATEEEYEEIRSKMEESPFVC 61

Query: 63  QRKTDTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKT 122
            RK   SC+DP DI+Y+ TRTW ID+P IPKTPEGF R LVLR++F+K DAYY+TPTGK 
Sbjct: 62  NRKPGVSCDDPADIEYNATRTWVIDRPGIPKTPEGFKRSLVLRRDFSKMDAYYITPTGKK 121

Query: 123 VRSSTEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKN 176
           +R+  E+ AF++ANP+YKD+ LS+F+F  PK+ME+T+PE  +++  +S +  + K  K+
Sbjct: 122 LRTRNEIAAFIDANPKYKDVNLSDFNFTSPKVMEDTIPEDAVRKVSSSGNGNKRKALKD 180

[Close]
BLAST of Csa7G391290 vs. TrEMBL
Match: A5ADK3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015457 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.7e-51
Identity = 94/166 (56.63%), Postives = 123/166 (74.10%), Query Frame = 1 

Query: 10  KTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPD 69
           K  +   R  +G +A QCE C KWRLI T+EEYE IRS+ IEEPF C +K D SCEDP D
Sbjct: 32  KRKSALVRSSIGAYAVQCEACLKWRLIDTEEEYEEIRSRFIEEPFVCSKKADVSCEDPTD 91

Query: 70  IDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEA 129
           I+YD TRTW  DKPN+PKTP+GF R LVLRK+F+K DAYY+TPTGK VR+ +E+ A++ +
Sbjct: 92  IEYDATRTWAADKPNVPKTPKGFQRDLVLRKDFSKMDAYYITPTGKKVRALSEIAAYLSS 151

Query: 130 NPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKN 176
           NP  KD++ S+F+F VPKIM +T+P  I ++   S S K+ KK++N
Sbjct: 152 NPDCKDLSPSDFNFMVPKIMADTIPAHIERKVSTSGSNKKRKKSEN 197

[Close]
BLAST of Csa7G391290 vs. TAIR10
Match: AT3G63030.1 (AT3G63030.1 methyl-CPG-binding domain 4)

HSP 1 Score: 194.1 bits (492), Expect = 7.4e-50
Identity = 86/151 (56.95%), Postives = 112/151 (74.17%), Query Frame = 1 

Query: 7   RPPKTPTKSTRLP---VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 66
           +P K   K    P   +  +AAQC+ C KWR+I +QEEYE IRSK++E+PF CQ+K   S
Sbjct: 9   KPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMS 68

Query: 67  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 126
           CE+P DIDYD++RTW IDKP +PKTP+GF R LVLRK+++K D YY TPTGK +RS  E+
Sbjct: 69  CEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEI 128

Query: 127 LAFVEANPQYKDIALSNFSFAVPKIMEETVP 155
            AFVEANP++++  L +F+F VPK+ME+TVP
Sbjct: 129 AAFVEANPEFRNAPLGDFNFTVPKVMEDTVP 159

[Close]
BLAST of Csa7G391290 vs. TAIR10
Match: AT4G22745.1 (AT4G22745.1 methyl-CPG-binding domain 1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-47
Identity = 84/158 (53.16%), Postives = 111/158 (70.25%), Query Frame = 1 

Query: 11  TPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPDI 70
           TP +S    + +FA QCE+C KWR I TQ+EYE IRS++ E+PF C+ K   SCED  D+
Sbjct: 47  TPGRS----IDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDL 106

Query: 71  DYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEAN 130
           +YD++RTW IDKP +P+TP GF R L+LRK+++K DAYY+TPTGK ++S  E+ AF++AN
Sbjct: 107 NYDSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDAN 166

Query: 131 PQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAK 169
             YK   L +F+F VPK+MEETVP  IL +     S K
Sbjct: 167 QDYKYALLGDFNFTVPKVMEETVPSGILSDRTPKPSRK 200

[Close]
BLAST of Csa7G391290 vs. TAIR10
Match: AT5G35330.1 (AT5G35330.1 methyl-CPG-binding domain protein 02)

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-28
Identity = 62/140 (44.29%), Postives = 87/140 (62.14%), Query Frame = 1 

Query: 20  VGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTC----QRKTDTSCEDPPDIDYDTT 79
           +G F  QC  CFKWRL+ + ++YE IR +++E PF C    + K D SC+ P DI  D T
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 80  RTWGIDKPNIPKTPEGFTRRLVLR-KNFTKF-DAYYVTPTGKTVRSSTEVLAFVEANPQY 139
           R W IDKPNI + P G+ R L +R +  T+F D YYV P+GK +RS+ EV  ++  N +Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 140 --KDIALSNFSFAVPKIMEE 152
             + + LS FSF +PK +++
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

[Close]
BLAST of Csa7G391290 vs. TAIR10
Match: AT4G00416.1 (AT4G00416.1 methyl-CPG-binding domain 3)

HSP 1 Score: 104.8 bits (260), Expect = 5.9e-23
Identity = 62/152 (40.79%), Postives = 89/152 (58.55%), Query Frame = 1 

Query: 23  FAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPD--IDYDT-TRTWG 82
           +AAQC +C K R I +QE+YE IRSK +E+ F C+R     CE+P D  +++D+ T  W 
Sbjct: 12  YAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWF 71

Query: 83  IDKPNIPKTPEGFTRRLVLRKNFTKFDAYY--VTPTGKTVRSSTEVLAFVEANPQYKDIA 142
            D+ +IPKTP+G  R LV+R N  K D YY  + P  K  +S  EV  F+E   ++KD+ 
Sbjct: 72  QDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMT 131

Query: 143 LSNFSFAVPKIMEETVPESILKEGLNSSSAKR 170
           L   SFA PK ++      + K+ ++S S+ R
Sbjct: 132 LEEVSFAAPKRLK------LKKKPVDSHSSSR 152

[Close]
BLAST of Csa7G391290 vs. TAIR10
Match: AT5G35338.2 (AT5G35338.2 methyl-CPG-binding domain 12)

HSP 1 Score: 87.4 bits (215), Expect = 9.7e-18
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 1 

Query: 26  QCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT----DTSCEDPPDIDYDTTRTWGID 85
           QC +C KWRLI + + Y  I+   ++ PF C   +    + SC  P D    T  TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW--- 62

Query: 86  KPNIPKTPEGFTRRLVLRKNFTKF-DAYYVTPTGKTVRSSTEVLAFVEANPQY--KDIAL 145
            P+IP  P G++R + +R   TKF D YY  P+G+ +RSS EV +F++ +P+Y  + +  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 146 SNFSFAVPKIMEE 152
           S FSF +PK +++
Sbjct: 123 SQFSFQIPKPLDD 129

[Close]
BLAST of Csa7G391290 vs. NCBI nr
Match: gi|449462288|ref|XP_004148873.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis sativus])

HSP 1 Score: 370.5 bits (950), Expect = 1.6e-99
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1 

Query: 1   MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT 60
           MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT
Sbjct: 1   MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKT 60

Query: 61  DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS 120
           DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS
Sbjct: 61  DTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSS 120

Query: 121 TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT 180
           TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT
Sbjct: 121 TEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHT 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]
BLAST of Csa7G391290 vs. NCBI nr
Match: gi|659101067|ref|XP_008451407.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 344.0 bits (881), Expect = 1.6e-91
Identity = 166/179 (92.74%), Postives = 173/179 (96.65%), Query Frame = 1 

Query: 3   AAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDT 62
           AAA RPPKTP KSTR+PV LFA QCEECFKWRLISTQEEYE IRS++IEEPFTCQRKTDT
Sbjct: 2   AAAARPPKTPIKSTRVPVSLFAVQCEECFKWRLISTQEEYEDIRSRMIEEPFTCQRKTDT 61

Query: 63  SCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTE 122
           SCEDPPDI+YDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRS TE
Sbjct: 62  SCEDPPDINYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSPTE 121

Query: 123 VLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE 182
           +LAFV+ANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESA+TE
Sbjct: 122 ILAFVQANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAYTE 180

[Close]
BLAST of Csa7G391290 vs. NCBI nr
Match: gi|902240303|gb|KNA25962.1| (hypothetical protein SOVF_001680 [Spinacia oleracea])

HSP 1 Score: 210.7 bits (535), Expect = 2.2e-51
Identity = 99/171 (57.89%), Postives = 131/171 (76.61%), Query Frame = 1 

Query: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63
           A+ + P+T T +    +GL+A QC ECFKWRLIS +EEYE IRSK++EEPFTC +K D S
Sbjct: 31  ASSKKPQTGTNT----IGLYAVQCGECFKWRLISNEEEYEVIRSKLLEEPFTCSKKPDAS 90

Query: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123
           C DP DI+ D TRTW IDKPNIP+TP GF R+LVLR++F+K DA+YVTPTGK VRSSTEV
Sbjct: 91  CNDPADIEKDATRTWVIDKPNIPRTPVGFKRKLVLRRDFSKLDAHYVTPTGKKVRSSTEV 150

Query: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTK 175
             ++E NP+ K ++++ FSF VPK++EET+P+ I ++     SAK+ K +K
Sbjct: 151 AKYLEENPEVKGVSVNEFSFTVPKVVEETIPKDIERK----PSAKKAKDSK 193

[Close]
BLAST of Csa7G391290 vs. NCBI nr
Match: gi|567903344|ref|XP_006444160.1| (hypothetical protein CICLE_v10022348mg [Citrus clementina])

HSP 1 Score: 209.9 bits (533), Expect = 3.7e-51
Identity = 97/171 (56.73%), Postives = 126/171 (73.68%), Query Frame = 1 

Query: 9   PKTPTKSTR------LPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDT 68
           PKT +K  R        +  +AAQCE+CFKWR+I++ EEYE IR KI E PF C RK   
Sbjct: 8   PKTASKKPRGGGEPIRSIDTYAAQCEKCFKWRVINSSEEYEEIRCKIAEIPFVCDRKPGV 67

Query: 69  SCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTE 128
           SCEDP DI+YD +R W ID+P IPKTP GF R LVLRK+F+K DAYY+TPTGK +R+  E
Sbjct: 68  SCEDPADIEYDASRVWVIDRPGIPKTPGGFKRSLVLRKDFSKMDAYYITPTGKKLRTLNE 127

Query: 129 VLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKT 174
           V  F+ ANP+Y D++LS+F+F+VPK+M++T+PE ++K+G  SS AKR  KT
Sbjct: 128 VAGFLAANPEYSDVSLSDFTFSVPKVMDDTIPEDVVKKGSASSDAKRKPKT 178

[Close]
BLAST of Csa7G391290 vs. NCBI nr
Match: gi|147788831|emb|CAN77824.1| (hypothetical protein VITISV_015457 [Vitis vinifera])

HSP 1 Score: 208.8 bits (530), Expect = 8.2e-51
Identity = 94/166 (56.63%), Postives = 123/166 (74.10%), Query Frame = 1 

Query: 10  KTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPD 69
           K  +   R  +G +A QCE C KWRLI T+EEYE IRS+ IEEPF C +K D SCEDP D
Sbjct: 32  KRKSALVRSSIGAYAVQCEACLKWRLIDTEEEYEEIRSRFIEEPFVCSKKADVSCEDPTD 91

Query: 70  IDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEA 129
           I+YD TRTW  DKPN+PKTP+GF R LVLRK+F+K DAYY+TPTGK VR+ +E+ A++ +
Sbjct: 92  IEYDATRTWAADKPNVPKTPKGFQRDLVLRKDFSKMDAYYITPTGKKVRALSEIAAYLSS 151

Query: 130 NPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKN 176
           NP  KD++ S+F+F VPKIM +T+P  I ++   S S K+ KK++N
Sbjct: 152 NPDCKDLSPSDFNFMVPKIMADTIPAHIERKVSTSGSNKKRKKSEN 197

The following BLAST results are available for this feature:
BLAST of Csa7G391290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MBD4_ARATH1.3e-4856.95Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 P... [more]
MBD1_ARATH4.7e-4653.16Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=MBD1 P... [more]
MBD2_ARATH2.8e-2744.29Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 P... [more]
MBD3_ARATH1.0e-2140.79Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=MBD3 P... [more]
MBD12_ARATH1.7e-1636.84Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana GN=MBD12 P... [more]
BLAST of Csa7G391290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K900_CUCSA1.1e-99100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G391290 PE=4 SV=1[more]
A0A0K9S4A0_SPIOL1.5e-5157.89Uncharacterized protein OS=Spinacia oleracea GN=SOVF_001680 PE=4 SV=1[more]
V4U041_9ROSI2.6e-5156.73Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022348mg PE=4 SV=1[more]
A9PE20_POPTR5.7e-5151.96Methyl-CpG-binding domain-containing family protein OS=Populus trichocarpa GN=PO... [more]
A5ADK3_VITVI5.7e-5156.63Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015457 PE=4 SV=1[more]
BLAST of Csa7G391290 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G63030.17.4e-5056.95 methyl-CPG-binding domain 4[more]
AT4G22745.12.6e-4753.16 methyl-CPG-binding domain 1[more]
AT5G35330.11.6e-2844.29 methyl-CPG-binding domain protein 02[more]
AT4G00416.15.9e-2340.79 methyl-CPG-binding domain 3[more]
AT5G35338.29.7e-1836.84 methyl-CPG-binding domain 12[more]
BLAST of Csa7G391290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462288|ref|XP_004148873.1|1.6e-99100.00PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis sativus][more]
gi|659101067|ref|XP_008451407.1|1.6e-9192.74PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo][more]
gi|902240303|gb|KNA25962.1|2.2e-5157.89hypothetical protein SOVF_001680 [Spinacia oleracea][more]
gi|567903344|ref|XP_006444160.1|3.7e-5156.73hypothetical protein CICLE_v10022348mg [Citrus clementina][more]
gi|147788831|emb|CAN77824.1|8.2e-5156.63hypothetical protein VITISV_015457 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001739Methyl_CpG_DNA-bd
IPR011124Znf_CW
IPR016177DNA-bd_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008327 methyl-CpG binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU108952cucumber EST collection version 3.0transcribed_cluster
CU126327cucumber EST collection version 3.0transcribed_cluster
CU129393cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G391290.1Csa7G391290.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU126327CU126327transcribed_cluster
CU129393CU129393transcribed_cluster
CU108952CU108952transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001739Methyl-CpG DNA bindingGENE3DG3DSA:3.30.890.10coord: 53..173
score: 1.9
IPR001739Methyl-CpG DNA bindingPFAMPF01429MBDcoord: 87..149
score: 1.5
IPR001739Methyl-CpG DNA bindingSMARTSM00391TAM_2coord: 80..153
score: 6.
IPR001739Methyl-CpG DNA bindingPROFILEPS50982MBDcoord: 78..148
score: 13
IPR011124Zinc finger, CW-typePFAMPF07496zf-CWcoord: 24..69
score: 3.3
IPR011124Zinc finger, CW-typePROFILEPS51050ZF_CWcoord: 17..72
score: 11
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 60..153
score: 1.18
NoneNo IPR availablePANTHERPTHR12396METHYL-CPG BINDING PROTEIN, MBDcoord: 20..172
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G391290Cla014729Watermelon (97103) v1cuwmB553
Csa7G391290MELO3C015875Melon (DHL92) v3.5.1cumeB535
Csa7G391290ClCG09G006740Watermelon (Charleston Gray)cuwcgB517
Csa7G391290Lsi02G023260Bottle gourd (USVL1VR-Ls)culsiB509
Csa7G391290MELO3C015875.2Melon (DHL92) v3.6.1cumedB514
Csa7G391290Cla97C09G169310Watermelon (97103) v2cuwmbB560
Csa7G391290Bhi09G000828Wax gourdcuwgoB693
Csa7G391290CSPI07G16700Wild cucumber (PI 183967)cpicuB354
Csa7G391290Cucsa.084840Cucumber (Gy14) v1cgycuB085
Csa7G391290CmaCh08G003710Cucurbita maxima (Rimu)cmacuB920
Csa7G391290CmaCh17G011500Cucurbita maxima (Rimu)cmacuB388
Csa7G391290CmoCh08G003660Cucurbita moschata (Rifu)cmocuB907
Csa7G391290CmoCh17G011260Cucurbita moschata (Rifu)cmocuB378
Csa7G391290Cp4.1LG17g06780Cucurbita pepo (Zucchini)cpecuB339
Csa7G391290Cp4.1LG12g11910Cucurbita pepo (Zucchini)cpecuB158
Csa7G391290CsGy7G015180Cucumber (Gy14) v2cgybcuB323
Csa7G391290Carg22180Silver-seed gourdcarcuB0875
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G391290Cucurbita maxima (Rimu)cmacuB385
Csa7G391290Cucurbita maxima (Rimu)cmacuB914
Csa7G391290Cucurbita moschata (Rifu)cmocuB375
Csa7G391290Cucurbita moschata (Rifu)cmocuB900
Csa7G391290Melon (DHL92) v3.5.1cumeB522
Csa7G391290Cucurbita pepo (Zucchini)cpecuB161
Csa7G391290Bottle gourd (USVL1VR-Ls)culsiB503
Csa7G391290Melon (DHL92) v3.6.1cumedB507
Csa7G391290Silver-seed gourdcarcuB0117