Cucsa.084840.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCGAAATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGGTACGCCGGAAACTCTATTCTCTTCCTCCAATTTATTCTTTATATCCTACATGGTTTCCTCTTTATCGGATTCATTCAATAATTTCAATTATCTCTCATTTGCGTTCTGGGGAACTGTAACCCTTAAATTCTGAAGATTGGAAAATACGGCCTAAGTAAATTGATGCTGTTTGGAGCTGGTTACGCCTTTGTTTTCCTCGTTTAGCGAGTACTGCGAAGTTTCACGGTGCATAGGGAAAATTTATTGAATGTGGCTATAATCAAGGGTGCGTAATTATCGGTTACATTGAAGCAGTCTCCTGCAATAATTTCTTGGAAATAGGAAAGTTGAATGGGGAGATAATTAGTTGAGTTTTGCTTAATTATGGAAAAaGGAGGTTTAATTGAACTTGATATTGGTTTGTAGGTCCATCTGTTGTGTGAGAATTAATGCTCATTTAAACATAATCTTAAAGAAATTCATCAAAGTTCAAGTTCGTTAAAATATTTGTTGGCAGTGGCTGTGGGGAAGTTATTATGAAATTCAACGTCAGCTATTCTGGGACACTCATTTTTATTATAGTTTCTTGAAGTTTTAAAGTGAAACTCAGAGGTTCGATGCTTCTTTGTGGGCATTGGTCACTAGGAATTTTTGTAATTATGTCATTGATCTTGTTAGTTTGGGCTCGAGAACATTTTGTAGTTAGTGGAGGACACATACTTCTTTACGGCTTATTCTTTATATTGTTCTTGTATTCTTTATTTGTTTTACTCAAACAGAAGTGAAAGTTAGAGATGGAAGTGAATTTCTGAGTCTCATGTGTTTACCGATTGGATTTCTTTAAGTGTAACTCTTACAACTTTTCATTTAATACTTGAAAGGATCTTCTTTTATTGTCGCGTTGATTGTTCCAACTATAAAAAaGAAGTCCATCTAAGTTATTAGAAGCCTCTTTTGGTGTAATCTAAGGTGTTATTGGTTTCTGTTTACAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGAAAATCACTAGGGATTTGCTCGTAGCATTCTATTGTTGATCTTAACCCTTGTGAATGATTTGATATTGTGCCGAAAGATGTAGAATGATGATTCTCCACTATTGTTTGTACCATTTTCTTGTTCACTTATGAGGAGAGTTGGGGTATATGGTATCATATTGCCATGTTTGATGACTGTCTGAAGATTGTTGGACTGAGTGAATTTGGTGACAGCAATGAGCAGTGACAAATATCTAGGAAAAAT GCGAAATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGAAAATCACTAGGGATTTGCTCGTAGCATTCTATTGTTGATCTTAACCCTTGTGAATGATTTGATATTGTGCCGAAAGATGTAGAATGATGATTCTCCACTATTGTTTGTACCATTTTCTTGTTCACTTATGAGGAGAGTTGGGGTATATGGTATCATATTGCCATGTTTGATGACTGTCTGAAGATTGTTGGACTGAGTGAATTTGGTGACAGCAATGAGCAGTGACAAATATCTAGGAAAAAT ATGGCCGCCGCCGCCGACAGGCCTCCCAAAACGCCGACAAAGTCAACACGACTCCCAGTGGGTTTATTTGCTGCCCAGTGTGAGGAATGCTTCAAATGGAGGTTAATAAGTACCCAAGAGGAGTATGAAGGTATTAGAAGCAAAATTATAGAAGAACCTTTCACTTGCCAAAGGAAAACCGATACTTCTTGTGAAGATCCTCCCGATATTGACTATGATACAACTCGAACATGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTGCTGAGAAAGAACTTCACTAAATTCGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCAACAGAGGTGTTAGCTTTTGTAGAAGCAAATCCTCAATACAAAGATATAGCTCTTTCAAACTTCAGTTTTGCTGTCCCAAAAATTATGGAAGAAACTGTTCCTGAAAGCATCTTGAAAGAGGGTTTAAATAGCAGCAGTGCCAAAAGAATTAAGAAAACAAAGAATGAATCTGCCCATACTGAATGA MAAAADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTSCEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEVLAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKKTKNESAHTE*
BLAST of Cucsa.084840.1 vs. Swiss-Prot
Match: MBD4_ARATH (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 PE=2 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 1.3e-48 Identity = 86/151 (56.95%), Postives = 114/151 (75.50%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. Swiss-Prot
Match: MBD1_ARATH (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=MBD1 PE=2 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 4.7e-46 Identity = 84/158 (53.16%), Postives = 113/158 (71.52%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. Swiss-Prot
Match: MBD2_ARATH (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 PE=1 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 2.8e-27 Identity = 62/140 (44.29%), Postives = 89/140 (63.57%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. Swiss-Prot
Match: MBD3_ARATH (Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=MBD3 PE=2 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.0e-21 Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. Swiss-Prot
Match: MBD12_ARATH (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana GN=MBD12 PE=3 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.7e-16 Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. TrEMBL
Match: A0A0A0K900_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G391290 PE=4 SV=1) HSP 1 Score: 370.5 bits (950), Expect = 1.1e-99 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. TrEMBL
Match: A0A0K9S4A0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_001680 PE=4 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 1.5e-51 Identity = 99/171 (57.89%), Postives = 131/171 (76.61%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. TrEMBL
Match: V4U041_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022348mg PE=4 SV=1) HSP 1 Score: 209.9 bits (533), Expect = 2.6e-51 Identity = 97/171 (56.73%), Postives = 126/171 (73.68%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. TrEMBL
Match: D7TP90_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00770 PE=4 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 5.7e-51 Identity = 94/166 (56.63%), Postives = 123/166 (74.10%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. TrEMBL
Match: A5ADK3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015457 PE=4 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 5.7e-51 Identity = 94/166 (56.63%), Postives = 123/166 (74.10%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. TAIR10
Match: AT3G63030.1 (AT3G63030.1 methyl-CPG-binding domain 4) HSP 1 Score: 194.1 bits (492), Expect = 7.4e-50 Identity = 86/151 (56.95%), Postives = 114/151 (75.50%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. TAIR10
Match: AT4G22745.1 (AT4G22745.1 methyl-CPG-binding domain 1) HSP 1 Score: 185.7 bits (470), Expect = 2.6e-47 Identity = 84/158 (53.16%), Postives = 113/158 (71.52%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. TAIR10
Match: AT5G35330.1 (AT5G35330.1 methyl-CPG-binding domain protein 02) HSP 1 Score: 123.2 bits (308), Expect = 1.6e-28 Identity = 62/140 (44.29%), Postives = 89/140 (63.57%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. TAIR10
Match: AT4G00416.1 (AT4G00416.1 methyl-CPG-binding domain 3) HSP 1 Score: 104.8 bits (260), Expect = 5.9e-23 Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. TAIR10
Match: AT5G35338.2 (AT5G35338.2 methyl-CPG-binding domain 12) HSP 1 Score: 87.4 bits (215), Expect = 9.7e-18 Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. NCBI nr
Match: gi|449462288|ref|XP_004148873.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis sativus]) HSP 1 Score: 370.5 bits (950), Expect = 1.6e-99 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. NCBI nr
Match: gi|659101067|ref|XP_008451407.1| (PREDICTED: methyl-CpG-binding domain-containing protein 4 [Cucumis melo]) HSP 1 Score: 344.0 bits (881), Expect = 1.6e-91 Identity = 166/179 (92.74%), Postives = 173/179 (96.65%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. NCBI nr
Match: gi|902240303|gb|KNA25962.1| (hypothetical protein SOVF_001680 [Spinacia oleracea]) HSP 1 Score: 210.7 bits (535), Expect = 2.2e-51 Identity = 99/171 (57.89%), Postives = 131/171 (76.61%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. NCBI nr
Match: gi|567903344|ref|XP_006444160.1| (hypothetical protein CICLE_v10022348mg [Citrus clementina]) HSP 1 Score: 209.9 bits (533), Expect = 3.7e-51 Identity = 97/171 (56.73%), Postives = 126/171 (73.68%), Query Frame = 1
BLAST of Cucsa.084840.1 vs. NCBI nr
Match: gi|147788831|emb|CAN77824.1| (hypothetical protein VITISV_015457 [Vitis vinifera]) HSP 1 Score: 208.8 bits (530), Expect = 8.2e-51 Identity = 94/166 (56.63%), Postives = 123/166 (74.10%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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