CmaCh17G009210 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G009210
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_27
Location	Cma_Chr17 : 6930169 .. 6930579 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCATAAACGCCATTATGACATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATCCAAGATGAGATTCAAACCGGCACATTGAACAATGACGATCAATACGAGAAGTTTGGCACGAAAGGGTTCGAGAACAACGATCATAAAAGCTTAAAACAACTCATCAATGGGGAAGGGAAAACAGAAATAGGGTCGGACGAGAGGAACCGAGATAGGAACTCGCTCGGGAAACACTTTAGTGAGGAAGAGATCAACGGTCTTCAAATTGTGAAGAAACAACATGAAGATGGACTACAAGGAGTGAAGCTGAAAAAAGTGGTCGGAAAATTTTTGAGAAATTTGATCAAAGGTGGTAGTGATCAACACCAGCTAATGAAGAAGGCAACTAGAAAAAAGAGTTTCCCCTAA

mRNA sequence

ATGTCTCATAAACGCCATTATGACATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATCCAAGATGAGATTCAAACCGGCACATTGAACAATGACGATCAATACGAGAAGTTTGGCACGAAAGGGTTCGAGAACAACGATCATAAAAGCTTAAAACAACTCATCAATGGGGAAGGGAAAACAGAAATAGGGTCGGACGAGAGGAACCGAGATAGGAACTCGCTCGGGAAACACTTTAGTGAGGAAGAGATCAACGGTCTTCAAATTGTGAAGAAACAACATGAAGATGGACTACAAGGAGTGAAGCTGAAAAAAGTGGTCGGAAAATTTTTGAGAAATTTGATCAAAGGTGGTAGTGATCAACACCAGCTAATGAAGAAGGCAACTAGAAAAAAGAGTTTCCCCTAA

Coding sequence (CDS)

ATGTCTCATAAACGCCATTATGACATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATCCAAGATGAGATTCAAACCGGCACATTGAACAATGACGATCAATACGAGAAGTTTGGCACGAAAGGGTTCGAGAACAACGATCATAAAAGCTTAAAACAACTCATCAATGGGGAAGGGAAAACAGAAATAGGGTCGGACGAGAGGAACCGAGATAGGAACTCGCTCGGGAAACACTTTAGTGAGGAAGAGATCAACGGTCTTCAAATTGTGAAGAAACAACATGAAGATGGACTACAAGGAGTGAAGCTGAAAAAAGTGGTCGGAAAATTTTTGAGAAATTTGATCAAAGGTGGTAGTGATCAACACCAGCTAATGAAGAAGGCAACTAGAAAAAAGAGTTTCCCCTAA

Protein sequence

MSHKRHYDISMSKRTRKPAKIQDEIQTGTLNNDDQYEKFGTKGFENNDHKSLKQLINGEGKTEIGSDERNRDRNSLGKHFSEEEINGLQIVKKQHEDGLQGVKLKKVVGKFLRNLIKGGSDQHQLMKKATRKKSFP

Homology

[Close]

BLAST of CmaCh17G009210 vs. TrEMBL
Match: A0A0A0KBK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430160 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.7e-45
Identity = 105/138 (76.09%), Postives = 115/138 (83.33%), Query Frame = 1


Query: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTLNNDDQYE-KFGTKGFENNDHKSLKQLINGE 60
           +SHK+HYDISMSKRTRKPAKIQDE+Q    N+DD      G +   NNDHKSLKQLI+GE
Sbjct: 6   ISHKQHYDISMSKRTRKPAKIQDELQILPTNDDDLIIIGKGDQSEINNDHKSLKQLISGE 65

Query: 61  GKTEIGSDERNRDRNSLGKHFSEEEINGLQIVKKQHEDGLQGVKLKKVVGKFLRNLIKGG 120
           GK EI SDE NR+RNSLG+HFS+EEIN LQIVKKQH+DGLQGVKLKKVVGKFLRNLIKGG
Sbjct: 66  GKAEIRSDEGNRERNSLGQHFSKEEINNLQIVKKQHQDGLQGVKLKKVVGKFLRNLIKGG 125

Query: 121 SD--QHQLMKKATRKKSF 136
            D  QHQLMKK  RKKSF
Sbjct: 126 GDHHQHQLMKKPIRKKSF 143

[Close]

BLAST of CmaCh17G009210 vs. TrEMBL
Match: A2Q3C1_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g062280 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 61/136 (44.85%), Postives = 79/136 (58.09%), Query Frame = 1


Query: 2   SHKRHYDISMSKRTRKPAKIQDEIQTGTLNNDDQYEKFGT-----KGFENN-DHKSLKQL 61
           S KRHYDI+MS+RTRK   + +E     +          T     +G ENN DHKSLKQL
Sbjct: 6   SAKRHYDITMSRRTRKQQSLANEKPISKVETPKDVSLETTIPEVKEGNENNIDHKSLKQL 65

Query: 62  INGEGKTEI----GSDE-RNRDRNSLGKHFSEEEINGLQIVKKQHEDGLQGVKLKKVV-- 121
           I GE K        SDE  ++ RNSLG+HF+EEE   LQ+V+ Q +D LQG+K KK+V  
Sbjct: 66  IVGEEKESTKKCSSSDEGESKGRNSLGEHFTEEE-KQLQLVRMQQKDNLQGLKFKKLVRR 125

Query: 122 -GKFLRNLIKGGSDQH 124
             K L +++K   D H
Sbjct: 126 YAKVLGHMMKSKRDPH 140

[Close]

BLAST of CmaCh17G009210 vs. TrEMBL
Match: A0A067JCA4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05256 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.1e-12
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 4   KRHYDISMSKRTRKPAKIQDEIQTGTLNNDDQYEKFGTKGFENNDHKSLKQLINGEGKT- 63
           K  YDI+MSKRTRKP K         L  +D           + D KSLKQLING     
Sbjct: 9   KHRYDITMSKRTRKPLKSNMPQAHADLRGEDNL-----LAKVDEDRKSLKQLINGIANNV 68

Query: 64  -EIGSDERNRDRNSLGKHFSEEEINGLQIVKKQHEDGLQGVKLKKVVGKFLRNL 116
            E   D  NR RNSLG+HFSEEE   LQ++++Q++ GLQ VKLK ++G++++ L
Sbjct: 69  EETKEDSENRGRNSLGQHFSEEE-KQLQLMRRQNQQGLQAVKLKGIMGRYVKVL 116

[Close]

BLAST of CmaCh17G009210 vs. TrEMBL
Match: A0A059ATJ1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02808 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 61/146 (41.78%), Postives = 82/146 (56.16%), Query Frame = 1


Query: 5   RHYDISMSKRTRKPAKIQDEIQ----TGTLNNDD-----QYEKFGTKGFENNDHKSLKQL 64
           R YD++MSKRTRKP K+++ I     TG   +         EK  T     +D +SLKQL
Sbjct: 10  RSYDLAMSKRTRKPLKLEETISDISVTGFARSQGSEAFLDQEKGITVEELASDRQSLKQL 69

Query: 65  INGEGKTEIGSDERNRDRNSLGKHFSEEEINGLQIVK---KQHEDGLQGVKLKKVV---G 124
           IN EGK  + S E  R R+SLG HF+EE +  LQ+V+   KQ + G +G+KLK +V    
Sbjct: 70  INSEGKPPLESGEERR-RSSLGHHFTEEAVTQLQVVRVRAKQRQGGAEGMKLKGMVSRCA 129

Query: 125 KFLRNLIKG-----GSDQHQLMKKAT 131
           K L  LIKG     G  + QL+ + T
Sbjct: 130 KVLSQLIKGHPPPAGGSKKQLILRLT 154

[Close]

BLAST of CmaCh17G009210 vs. TrEMBL
Match: V7BT09_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G042700g PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 1


Query: 2   SHKRHYDISMSKRTRK---PAKIQDEIQTG---TLNNDDQYEKFGT-----KGFENNDHK 61
           S KR YDI+MS+RTRK   P +  ++ ++        DD+ +   T     K    NDHK
Sbjct: 7   SVKRPYDITMSRRTRKHQFPVQGNEKSKSAMGDAAPKDDKLKVQATTIGEVKQGGENDHK 66

Query: 62  SLKQLINGEGKTEI---GSDERNR-DRNSLGKHFSEEEINGLQIVKKQHEDGLQGVKLKK 121
           SLKQLI G+   E     SDER +  RNSLG+HF+EEE   LQ+V+ Q ++ LQG+K KK
Sbjct: 67  SLKQLIIGDDDKEAMKGNSDERGKGSRNSLGEHFTEEEKQHLQLVRMQQKENLQGLKFKK 126

Query: 122 VVGKF---LRNLIKGGSDQH 124
           +V ++   L +L+K   D H
Sbjct: 127 LVSRYAKVLGHLLKAKRDPH 146

[Close]

BLAST of CmaCh17G009210 vs. NCBI nr
Match: gi|778728804|ref|XP_011659480.1| (PREDICTED: uncharacterized protein LOC105436185 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 3.8e-45
Identity = 105/138 (76.09%), Postives = 115/138 (83.33%), Query Frame = 1


Query: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTLNNDDQYE-KFGTKGFENNDHKSLKQLINGE 60
           +SHK+HYDISMSKRTRKPAKIQDE+Q    N+DD      G +   NNDHKSLKQLI+GE
Sbjct: 6   ISHKQHYDISMSKRTRKPAKIQDELQILPTNDDDLIIIGKGDQSEINNDHKSLKQLISGE 65

Query: 61  GKTEIGSDERNRDRNSLGKHFSEEEINGLQIVKKQHEDGLQGVKLKKVVGKFLRNLIKGG 120
           GK EI SDE NR+RNSLG+HFS+EEIN LQIVKKQH+DGLQGVKLKKVVGKFLRNLIKGG
Sbjct: 66  GKAEIRSDEGNRERNSLGQHFSKEEINNLQIVKKQHQDGLQGVKLKKVVGKFLRNLIKGG 125

Query: 121 SD--QHQLMKKATRKKSF 136
            D  QHQLMKK  RKKSF
Sbjct: 126 GDHHQHQLMKKPIRKKSF 143

[Close]

BLAST of CmaCh17G009210 vs. NCBI nr
Match: gi|659122589|ref|XP_008461224.1| (PREDICTED: uncharacterized protein LOC103499874 [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 8.6e-45
Identity = 103/137 (75.18%), Postives = 113/137 (82.48%), Query Frame = 1


Query: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTLNNDD-QYEKFGTKGFENNDHKSLKQLINGE 60
           +SHK+HYDISMSKRTRKPAKIQDE+Q  T  +D       G +   NNDHKSLKQLI+GE
Sbjct: 6   ISHKQHYDISMSKRTRKPAKIQDELQNFTSKDDGLSIIDKGDRSESNNDHKSLKQLISGE 65

Query: 61  GKTEIGSDERNRDRNSLGKHFSEEEINGLQIVKKQHEDGLQGVKLKKVVGKFLRNLIKGG 120
           GK E   DE NR+RNSLG+HFS+EEIN LQIVKKQH+DGLQGVKLKKVVGKFLRNLIKGG
Sbjct: 66  GKAETRLDEGNRERNSLGQHFSKEEINNLQIVKKQHQDGLQGVKLKKVVGKFLRNLIKGG 125

Query: 121 SD-QHQLMKKATRKKSF 136
            D QHQLMKK TRKKSF
Sbjct: 126 GDHQHQLMKKPTRKKSF 142

[Close]

BLAST of CmaCh17G009210 vs. NCBI nr
Match: gi|1009105988|ref|XP_015901462.1| (PREDICTED: uncharacterized protein LOC107434481 [Ziziphus jujuba])

HSP 1 Score: 86.3 bits (212), Expect = 4.6e-14
Identity = 61/133 (45.86%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 4   KRHYDISMSKRTRKPAKIQDEIQ-----TGTLNNDDQ--YEKFGTKGFENNDHKSLKQLI 63
           K HYDISMSKRTRKP   +D  +      G LN  ++    +  +   E N HKSLKQLI
Sbjct: 10  KLHYDISMSKRTRKPLNTRDANRKYSPPEGDLNGGEEGGGRRESSLDGEENGHKSLKQLI 69

Query: 64  NGEGKTEI-----GSDERNRD----RNSLGKHFSEEEINGLQIVKKQHEDGLQGVKLKKV 118
           NG+GK  +     G D+R+ +    R+SLG+HF+EEE N LQ++  Q ++GLQG KLKK+
Sbjct: 70  NGDGKAVVVIKSGGGDDRHEEISKGRSSLGQHFTEEEKN-LQLITTQQKEGLQGRKLKKM 129

[Close]

BLAST of CmaCh17G009210 vs. NCBI nr
Match: gi|922386512|ref|XP_003595828.2| (hypothetical protein MTR_2g062280 [Medicago truncatula])

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12
Identity = 61/136 (44.85%), Postives = 79/136 (58.09%), Query Frame = 1


Query: 2   SHKRHYDISMSKRTRKPAKIQDEIQTGTLNNDDQYEKFGT-----KGFENN-DHKSLKQL 61
           S KRHYDI+MS+RTRK   + +E     +          T     +G ENN DHKSLKQL
Sbjct: 6   SAKRHYDITMSRRTRKQQSLANEKPISKVETPKDVSLETTIPEVKEGNENNIDHKSLKQL 65

Query: 62  INGEGKTEI----GSDE-RNRDRNSLGKHFSEEEINGLQIVKKQHEDGLQGVKLKKVV-- 121
           I GE K        SDE  ++ RNSLG+HF+EEE   LQ+V+ Q +D LQG+K KK+V  
Sbjct: 66  IVGEEKESTKKCSSSDEGESKGRNSLGEHFTEEE-KQLQLVRMQQKDNLQGLKFKKLVRR 125

Query: 122 -GKFLRNLIKGGSDQH 124
             K L +++K   D H
Sbjct: 126 YAKVLGHMMKSKRDPH 140

[Close]

BLAST of CmaCh17G009210 vs. NCBI nr
Match: gi|802795909|ref|XP_012092626.1| (PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas])

HSP 1 Score: 79.0 bits (193), Expect = 7.3e-12
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 4   KRHYDISMSKRTRKPAKIQDEIQTGTLNNDDQYEKFGTKGFENNDHKSLKQLINGEGKT- 63
           K  YDI+MSKRTRKP K         L  +D           + D KSLKQLING     
Sbjct: 9   KHRYDITMSKRTRKPLKSNMPQAHADLRGEDNL-----LAKVDEDRKSLKQLINGIANNV 68

Query: 64  -EIGSDERNRDRNSLGKHFSEEEINGLQIVKKQHEDGLQGVKLKKVVGKFLRNL 116
            E   D  NR RNSLG+HFSEEE   LQ++++Q++ GLQ VKLK ++G++++ L
Sbjct: 69  EETKEDSENRGRNSLGQHFSEEE-KQLQLMRRQNQQGLQAVKLKGIMGRYVKVL 116

The following BLAST results are available for this feature:

BLAST of CmaCh17G009210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G009210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBK8_CUCSA	2.7e-45	76.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430160 PE=4 SV=1	[more]
A2Q3C1_MEDTR	1.8e-12	44.85	Uncharacterized protein OS=Medicago truncatula GN=MTR_2g062280 PE=4 SV=1	[more]
A0A067JCA4_JATCU	5.1e-12	45.61	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05256 PE=4 SV=1	[more]
A0A059ATJ1_EUCGR	1.9e-11	41.78	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02808 PE=4 SV=1	[more]
V7BT09_PHAVU	1.9e-11	42.14	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G042700g PE=4 SV=1	[more]

BLAST of CmaCh17G009210 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh17G009210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778728804\|ref\|XP_011659480.1\|	3.8e-45	76.09	PREDICTED: uncharacterized protein LOC105436185 [Cucumis sativus]	[more]
gi\|659122589\|ref\|XP_008461224.1\|	8.6e-45	75.18	PREDICTED: uncharacterized protein LOC103499874 [Cucumis melo]	[more]
gi\|1009105988\|ref\|XP_015901462.1\|	4.6e-14	45.86	PREDICTED: uncharacterized protein LOC107434481 [Ziziphus jujuba]	[more]
gi\|922386512\|ref\|XP_003595828.2\|	2.5e-12	44.85	hypothetical protein MTR_2g062280 [Medicago truncatula]	[more]
gi\|802795909\|ref\|XP_012092626.1\|	7.3e-12	45.61	PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G009210.1	CmaCh17G009210.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G009210	Cucsa.049890	Cucumber (Gy14) v1	cgycmaB0050
CmaCh17G009210	Cla015289	Watermelon (97103) v1	cmawmB328
CmaCh17G009210	Csa7G430160	Cucumber (Chinese Long) v2	cmacuB388
CmaCh17G009210	MELO3C023500	Melon (DHL92) v3.5.1	cmameB326
CmaCh17G009210	ClCG09G003640	Watermelon (Charleston Gray)	cmawcgB306
CmaCh17G009210	CSPI07G19730	Wild cucumber (PI 183967)	cmacpiB392
CmaCh17G009210	CmoCh17G008920	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G009210	CmoCh08G005570	Cucurbita moschata (Rifu)	cmacmoB374
CmaCh17G009210	Lsi02G026280	Bottle gourd (USVL1VR-Ls)	cmalsiB348
CmaCh17G009210	Cp4.1LG12g07080	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G009210	Cp4.1LG17g08400	Cucurbita pepo (Zucchini)	cmacpeB376
CmaCh17G009210	MELO3C023500.2	Melon (DHL92) v3.6.1	cmamedB379
CmaCh17G009210	CsaV3_7G031540	Cucumber (Chinese Long) v3	cmacucB0462
CmaCh17G009210	Cla97C09G165900	Watermelon (97103) v2	cmawmbB387
CmaCh17G009210	Bhi09G000469	Wax gourd	cmawgoB0487
CmaCh17G009210	Carg18714	Silver-seed gourd	carcmaB0497
CmaCh17G009210	Carg13480	Silver-seed gourd	carcmaB0625

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh17G009210	CmaCh08G005650	Cucurbita maxima (Rimu)	cmacmaB382

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G009210	Silver-seed gourd	carcmaB1133
CmaCh17G009210	Watermelon (97103) v2	cmawmbB360
CmaCh17G009210	Cucurbita maxima (Rimu)	cmacmaB250
CmaCh17G009210	Cucurbita maxima (Rimu)	cmacmaB360
CmaCh17G009210	Cucurbita moschata (Rifu)	cmacmoB351
CmaCh17G009210	Cucurbita moschata (Rifu)	cmacmoB354
CmaCh17G009210	Wild cucumber (PI 183967)	cmacpiB365
CmaCh17G009210	Cucumber (Chinese Long) v2	cmacuB361
CmaCh17G009210	Melon (DHL92) v3.5.1	cmameB333
CmaCh17G009210	Watermelon (Charleston Gray)	cmawcgB314
CmaCh17G009210	Watermelon (97103) v1	cmawmB336
CmaCh17G009210	Cucurbita pepo (Zucchini)	cmacpeB399
CmaCh17G009210	Cucurbita pepo (Zucchini)	cmacpeB404
CmaCh17G009210	Bottle gourd (USVL1VR-Ls)	cmalsiB351
CmaCh17G009210	Cucumber (Gy14) v2	cgybcmaB925