Carg18714 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18714
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein phosphatase Slingshot 1 like
Location	Cucurbita_argyrosperma_scaffold_139 : 272131 .. 273007 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCATAAACGCCATTATGATATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATCCAAGATGAGATTCAAACCGGCACATCGAACAATGACGATCAATACGAGAGGTTTGGCACAAAAGAGTTCGAGAACAACGACCATAAAAGCTTAAAACAGCTCATCAATGGGGAAGGAAAAACGGAAATAGGGTCGGACGAGAGGAACGGAGAAAGGAACTCGCTCGGAAAACACTTTAGTGAGGAAGAGATCAACGGTCTTCAAATTGTGAAGAAACAACATGAAGATGGACTACATGGAGTGAAGCTCAAAAAAGTTGTCGGAAAATTTTTGAGAAATTTGATCAAAGGTGATGGTGATCGACACCAGCTGATGAAGAAGGCAATTATAAAAAAATCTTTCCCCTAAACACATTATTTCTTAATGATTGTATATGAAACTATATAATATTGTATAAAGTTTATTGTTCGAGTTCTCTTTTTATATCATACATTTTAAACCTAACTTATTTATGTTTAAATTGTTTATAATATATAAAAGACGTTAAAATACATAGTCAAATTCAATAATTATGCCAACCAATGGTGTATTTATTTTAGAAATAAAAATATTTAAATATTTAAAATTAATTGAAAGATTTTCATTTAAAAAATGTAGTGTCCTGTAATCTCTTTTCGATTGGTAAGGTGCGAGCATGGGTTGGGAGGCAACGCTACAACGTCCTGAGCCCGTGTTTAATGAGGTTCGTGCTGGTCTCCGCCCAACCGAAGTGTACGGGGGAGAGCGCACGGGTTGGGATGCAATTTTGGGCCAATTCACGACAAAGAAAGGCCCATATTATCATCACAAGAAGCCCAAAAGGCTATCTATCTAA

mRNA sequence

ATGTCTCATAAACGCCATTATGATATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATCCAAGATGAGATTCAAACCGGCACATCGAACAATGACGATCAATACGAGAGGTTTGGCACAAAAGAGTTCGAGAACAACGACCATAAAAGCTTAAAACAGCTCATCAATGGGGAAGGAAAAACGGAAATAGGGTCGGACGAGAGGAACGGAGAAAGGAACTCGCTCGGAAAACACTTTAGTGAGGAAGAGATCAACGGTCTTCAAATTGTGAAGAAACAACATGAAGATGGACTACATGGAGTGAAGCTCAAAAAAGTTGTCGGAAAATTTTTGAGAAATTTGATCAAAGGTGATGGTGCGAGCATGGGTTGGGAGGCAACGCTACAACGTCCTGAGCCCGTGTTTAATGAGGTTCGTGCTGGTCTCCGCCCAACCGAAGTGTACGGGGGAGAGCGCACGGGTTGGGATGCAATTTTGGGCCAATTCACGACAAAGAAAGGCCCATATTATCATCACAAGAAGCCCAAAAGGCTATCTATCTAA

Coding sequence (CDS)

ATGTCTCATAAACGCCATTATGATATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATCCAAGATGAGATTCAAACCGGCACATCGAACAATGACGATCAATACGAGAGGTTTGGCACAAAAGAGTTCGAGAACAACGACCATAAAAGCTTAAAACAGCTCATCAATGGGGAAGGAAAAACGGAAATAGGGTCGGACGAGAGGAACGGAGAAAGGAACTCGCTCGGAAAACACTTTAGTGAGGAAGAGATCAACGGTCTTCAAATTGTGAAGAAACAACATGAAGATGGACTACATGGAGTGAAGCTCAAAAAAGTTGTCGGAAAATTTTTGAGAAATTTGATCAAAGGTGATGGTGCGAGCATGGGTTGGGAGGCAACGCTACAACGTCCTGAGCCCGTGTTTAATGAGGTTCGTGCTGGTCTCCGCCCAACCGAAGTGTACGGGGGAGAGCGCACGGGTTGGGATGCAATTTTGGGCCAATTCACGACAAAGAAAGGCCCATATTATCATCACAAGAAGCCCAAAAGGCTATCTATCTAA

Protein sequence

MSHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDDQYERFGTKEFENNDHKSLKQLINGEGKTEIGSDERNGERNSLGKHFSEEEINGLQIVKKQHEDGLHGVKLKKVVGKFLRNLIKGDGASMGWEATLQRPEPVFNEVRAGLRPTEVYGGERTGWDAILGQFTTKKGPYYHHKKPKRLSI

Homology

[Close]

BLAST of Carg18714 vs. NCBI nr
Match: XP_022953919.1 (uncharacterized protein LOC111456324 [Cucurbita moschata])

HSP 1 Score: 235.3 bits (599), Expect = 1.6e-58
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDDQYERFGTKEFENNDHKSLKQLINGEG 60
           MSHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDDQYERFGTKEFENNDHKSLKQLINGEG
Sbjct: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDDQYERFGTKEFENNDHKSLKQLINGEG 60

Query: 61  KTEIGSDERNGERNSLGKHFSEEEINGLQIVKKQHEDGLHGVKLKKVVGKFLRNLIKGDG 120
           KTEIGSDERNGERNSLGKHFSEEEIN LQIVKKQHEDGLHGVKLKKVVGKFLRNLIKGDG
Sbjct: 61  KTEIGSDERNGERNSLGKHFSEEEINSLQIVKKQHEDGLHGVKLKKVVGKFLRNLIKGDG 120

[Close]

BLAST of Carg18714 vs. NCBI nr
Match: XP_023549383.1 (uncharacterized protein LOC111807744 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.8 bits (569), Expect = 4.8e-55
Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDDQYERFGTKEFENNDHKSLKQLINGEG 60
           MSHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDDQYERFGTK FENNDHKSLKQLINGEG
Sbjct: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDDQYERFGTKGFENNDHKSLKQLINGEG 60

Query: 61  KTEIGSDERNGERNSLGKHFSEEEINGLQIVKKQHEDGLHGVKLKKVVGKFLRNLIKGDG 120
           K EIGSDERNGERNSLGKHFSEEEIN LQIVKKQHEDGL GVKLKK+VGKFLRNLIKG G
Sbjct: 61  KAEIGSDERNGERNSLGKHFSEEEINALQIVKKQHEDGLQGVKLKKMVGKFLRNLIKGGG 120

[Close]

BLAST of Carg18714 vs. NCBI nr
Match: XP_022991938.1 (uncharacterized protein LOC111488430 [Cucurbita maxima])

HSP 1 Score: 219.5 bits (558), Expect = 9.0e-54
Identity = 112/118 (94.92%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDDQYERFGTKEFENNDHKSLKQLINGEG 60
           MSHKRHYDISMSKRTRKPAKIQDEIQTGT NNDDQYE+FGTK FENNDHKSLKQLINGEG
Sbjct: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTLNNDDQYEKFGTKGFENNDHKSLKQLINGEG 60

Query: 61  KTEIGSDERNGERNSLGKHFSEEEINGLQIVKKQHEDGLHGVKLKKVVGKFLRNLIKG 119
           KTEIGSDERN +RNSLGKHFSEEEINGLQIVKKQHEDGL GVKLKKVVGKFLRNLIKG
Sbjct: 61  KTEIGSDERNRDRNSLGKHFSEEEINGLQIVKKQHEDGLQGVKLKKVVGKFLRNLIKG 118

[Close]

BLAST of Carg18714 vs. NCBI nr
Match: XP_011659480.1 (PREDICTED: uncharacterized protein LOC105436185 [Cucumis sativus] >KGN45181.1 hypothetical protein Csa_7G430160 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 2.0e-37
Identity = 91/121 (75.21%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDDQ-YERFGTKEFENNDHKSLKQLINGE 60
           +SHK+HYDISMSKRTRKPAKIQDE+Q   +N+DD      G +   NNDHKSLKQLI+GE
Sbjct: 6   ISHKQHYDISMSKRTRKPAKIQDELQILPTNDDDLIIIGKGDQSEINNDHKSLKQLISGE 65

Query: 61  GKTEIGSDERNGERNSLGKHFSEEEINGLQIVKKQHEDGLHGVKLKKVVGKFLRNLIKGD 120
           GK EI SDE N ERNSLG+HFS+EEIN LQIVKKQH+DGL GVKLKKVVGKFLRNLIKG 
Sbjct: 66  GKAEIRSDEGNRERNSLGQHFSKEEINNLQIVKKQHQDGLQGVKLKKVVGKFLRNLIKGG 125

[Close]

BLAST of Carg18714 vs. NCBI nr
Match: XP_008461224.1 (PREDICTED: uncharacterized protein LOC103499874 [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 1.3e-36
Identity = 89/121 (73.55%), Postives = 98/121 (80.99%), Query Frame = 0


Query: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDD-QYERFGTKEFENNDHKSLKQLINGE 60
           +SHK+HYDISMSKRTRKPAKIQDE+Q  TS +D       G +   NNDHKSLKQLI+GE
Sbjct: 6   ISHKQHYDISMSKRTRKPAKIQDELQNFTSKDDGLSIIDKGDRSESNNDHKSLKQLISGE 65

Query: 61  GKTEIGSDERNGERNSLGKHFSEEEINGLQIVKKQHEDGLHGVKLKKVVGKFLRNLIKGD 120
           GK E   DE N ERNSLG+HFS+EEIN LQIVKKQH+DGL GVKLKKVVGKFLRNLIKG 
Sbjct: 66  GKAETRLDEGNRERNSLGQHFSKEEINNLQIVKKQHQDGLQGVKLKKVVGKFLRNLIKGG 125

[Close]

BLAST of Carg18714 vs. TrEMBL
Match: tr|A0A0A0KBK8|A0A0A0KBK8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430160 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-37
Identity = 91/121 (75.21%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDDQ-YERFGTKEFENNDHKSLKQLINGE 60
           +SHK+HYDISMSKRTRKPAKIQDE+Q   +N+DD      G +   NNDHKSLKQLI+GE
Sbjct: 6   ISHKQHYDISMSKRTRKPAKIQDELQILPTNDDDLIIIGKGDQSEINNDHKSLKQLISGE 65

Query: 61  GKTEIGSDERNGERNSLGKHFSEEEINGLQIVKKQHEDGLHGVKLKKVVGKFLRNLIKGD 120
           GK EI SDE N ERNSLG+HFS+EEIN LQIVKKQH+DGL GVKLKKVVGKFLRNLIKG 
Sbjct: 66  GKAEIRSDEGNRERNSLGQHFSKEEINNLQIVKKQHQDGLQGVKLKKVVGKFLRNLIKGG 125

[Close]

BLAST of Carg18714 vs. TrEMBL
Match: tr|A0A1S3CFF2|A0A1S3CFF2_CUCME (uncharacterized protein LOC103499874 OS=Cucumis melo OX=3656 GN=LOC103499874 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 8.6e-37
Identity = 89/121 (73.55%), Postives = 98/121 (80.99%), Query Frame = 0


Query: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDD-QYERFGTKEFENNDHKSLKQLINGE 60
           +SHK+HYDISMSKRTRKPAKIQDE+Q  TS +D       G +   NNDHKSLKQLI+GE
Sbjct: 6   ISHKQHYDISMSKRTRKPAKIQDELQNFTSKDDGLSIIDKGDRSESNNDHKSLKQLISGE 65

Query: 61  GKTEIGSDERNGERNSLGKHFSEEEINGLQIVKKQHEDGLHGVKLKKVVGKFLRNLIKGD 120
           GK E   DE N ERNSLG+HFS+EEIN LQIVKKQH+DGL GVKLKKVVGKFLRNLIKG 
Sbjct: 66  GKAETRLDEGNRERNSLGQHFSKEEINNLQIVKKQHQDGLQGVKLKKVVGKFLRNLIKGG 125

[Close]

BLAST of Carg18714 vs. TrEMBL
Match: tr|A0A2P5BLH2|A0A2P5BLH2_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_228850 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 55/117 (47.01%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 2   SHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDDQYERFGTKEFENNDHKSLKQLINGEGK 61
           S+KRHYDI+MS+RTR+P K++D+     S  D   +  G  E E ND KSLKQLI+G+G 
Sbjct: 3   SNKRHYDITMSRRTRRPLKVRDDSGDDHSLKDSPPKGAG-DEGEENDRKSLKQLIDGDGN 62

Query: 62  TE-IGSDE--RNGERNSLGKHFSEEEINGLQIVKKQHEDGLHGVKLKKVVGKFLRNL 116
            + + SDE  +   R+SLG+H S+ E   LQ+V  Q   GLHG+KLKK+V ++ + L
Sbjct: 63  AKAVPSDEVGKGVIRSSLGEHLSDGENKQLQLVGVQQNKGLHGLKLKKMVSRYAKIL 118

[Close]

BLAST of Carg18714 vs. TrEMBL
Match: tr|A0A2P5AWR4|A0A2P5AWR4_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_339100 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.9e-13
Identity = 54/117 (46.15%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 2   SHKRHYDISMSKRTRKPAKIQDEIQTGTSNNDDQYERFGTKEFENNDHKSLKQLINGEGK 61
           S+KRHYDI+MS+RTR+P K++D      S  D    +    E E ND KSLKQLI+G+G 
Sbjct: 3   SNKRHYDITMSRRTRRPLKVRDNNGDDHSPKDSSPPKGAGDEGEENDRKSLKQLIDGDGN 62

Query: 62  TE-IGSDE--RNGERNSLGKHFSEEEINGLQIVKKQHEDGLHGVKLKKVVGKFLRNL 116
            + + SDE  +   R+SLG+H S+ E   LQ+V  Q + GLHG+KLKK+V ++ + L
Sbjct: 63  AKAVPSDEVGKGVTRSSLGEHLSDGENKQLQLVGVQ-QKGLHGLKLKKMVSRYAKIL 118

[Close]

BLAST of Carg18714 vs. TrEMBL
Match: tr|W9RIE8|W9RIE8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002670 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 53/114 (46.49%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 4   KRHYDISMSKRTRKPAKIQDEIQTGTSNNDDQYERFGTKEFENNDHKSLKQLINGEGKTE 63
           KR YDI+MS+RTR+P K++D      ++  D   R    E E ND KSLK+LI+G+ KT+
Sbjct: 5   KRPYDITMSRRTRRPPKVRD---ANENSPWDCPPRDVAHESEENDRKSLKELIDGDEKTK 64

Query: 64  I--GSDERNGERNSLGKHFSEEEINGLQIVKKQHEDGLHGVKLKKVVGKFLRNL 116
              G DE    R+SLG+HF+E E   LQIV  Q ++ LHG+KLKK+V ++ + L
Sbjct: 65  AVSGGDEGGKGRSSLGQHFTEGE-KQLQIVGVQQKESLHGLKLKKMVSRYAKVL 114

The following BLAST results are available for this feature:

BLAST of Carg18714 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953919.1	1.6e-58	99.17	uncharacterized protein LOC111456324 [Cucurbita moschata]	[more]
XP_023549383.1	4.8e-55	95.00	uncharacterized protein LOC111807744 [Cucurbita pepo subsp. pepo]	[more]
XP_022991938.1	9.0e-54	94.92	uncharacterized protein LOC111488430 [Cucurbita maxima]	[more]
XP_011659480.1	2.0e-37	75.21	PREDICTED: uncharacterized protein LOC105436185 [Cucumis sativus] >KGN45181.1 hy...	[more]
XP_008461224.1	1.3e-36	73.55	PREDICTED: uncharacterized protein LOC103499874 [Cucumis melo]	[more]

BLAST of Carg18714 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg18714 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18714 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBK8\|A0A0A0KBK8_CUCSA	1.3e-37	75.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430160 PE=4 SV=1	[more]
tr\|A0A1S3CFF2\|A0A1S3CFF2_CUCME	8.6e-37	73.55	uncharacterized protein LOC103499874 OS=Cucumis melo OX=3656 GN=LOC103499874 PE=...	[more]
tr\|A0A2P5BLH2\|A0A2P5BLH2_PARAD	1.3e-13	47.01	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_228850 PE...	[more]
tr\|A0A2P5AWR4\|A0A2P5AWR4_9ROSA	3.9e-13	46.15	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_339100 PE=4 S...	[more]
tr\|W9RIE8\|W9RIE8_9ROSA	1.3e-11	46.49	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002670 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18714-RA	Carg18714-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..80

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18714	Cla015289	Watermelon (97103) v1	carwmB0345
Carg18714	Csa7G430160	Cucumber (Chinese Long) v2	carcuB0387
Carg18714	MELO3C023500	Melon (DHL92) v3.5.1	carmeB0359
Carg18714	ClCG09G003640	Watermelon (Charleston Gray)	carwcgB0346
Carg18714	CSPI07G19730	Wild cucumber (PI 183967)	carcpiB0391
Carg18714	Cucsa.049890	Cucumber (Gy14) v1	carcgyB0413
Carg18714	CmaCh08G005650	Cucurbita maxima (Rimu)	carcmaB0499
Carg18714	CmaCh17G009210	Cucurbita maxima (Rimu)	carcmaB0497
Carg18714	CmoCh17G008920	Cucurbita moschata (Rifu)	carcmoB0480
Carg18714	CmoCh08G005570	Cucurbita moschata (Rifu)	carcmoB0482
Carg18714	Lsi02G026280	Bottle gourd (USVL1VR-Ls)	carlsiB321
Carg18714	Cp4.1LG17g08400	Cucurbita pepo (Zucchini)	carcpeB0494
Carg18714	Cp4.1LG12g07080	Cucurbita pepo (Zucchini)	carcpeB0493
Carg18714	MELO3C023500.2	Melon (DHL92) v3.6.1	carmedB0364
Carg18714	CsaV3_7G031540	Cucumber (Chinese Long) v3	carcucB0390
Carg18714	Cla97C09G165900	Watermelon (97103) v2	carwmbB0371
Carg18714	Bhi09G000469	Wax gourd	carwgoB0439

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18714	Carg13480	Silver-seed gourd	carcarB379

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18714	Silver-seed gourd	carcarB383
Carg18714	Cucumber (Gy14) v2	carcgybB0365
Carg18714	Cucumber (Gy14) v2	carcgybB0366
Carg18714	Cucurbita maxima (Rimu)	carcmaB0496
Carg18714	Cucurbita maxima (Rimu)	carcmaB0498
Carg18714	Cucurbita moschata (Rifu)	carcmoB0479
Carg18714	Cucurbita moschata (Rifu)	carcmoB0481
Carg18714	Cucurbita pepo (Zucchini)	carcpeB0495
Carg18714	Wild cucumber (PI 183967)	carcpiB0390
Carg18714	Cucumber (Chinese Long) v2	carcuB0386
Carg18714	Cucumber (Chinese Long) v3	carcucB0389
Carg18714	Bottle gourd (USVL1VR-Ls)	carlsiB322
Carg18714	Melon (DHL92) v3.5.1	carmeB0360
Carg18714	Watermelon (Charleston Gray)	carwcgB0347
Carg18714	Watermelon (97103) v1	carwmB0346
Carg18714	Watermelon (97103) v2	carwmbB0369
Carg18714	Wax gourd	carwgoB0437