Carg13480 (gene) Silver-seed gourd

NameCarg13480
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_049 : 676027 .. 676503 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTATGGCCTTTCCATTTCTGAGGCAATGGAGAGAGAGAGCATTTCTCATAAACACTATTATGATATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATTCAGGATGAGCTTCAAAATCTCACACCGAATAACGAAGATCTTAATGTTGATAATAGAGATCGATTTGGGAGTCCTACAACAAAAGGGTTCGAGAACAATGAACATAAAAGCTTGAAGCAACTCATGAATGAAGAAGAGAAAGCAGAGACGAGGTTGGGAGAAGACGAGGGCGGCCGACGAAGGAACTCACTTGGCCAACACTTTAGTAAAGAAGAGATGAACAAAAATCTTCAAATTGTGAAGAAACAACATCGAGATGGACTACAAGGAGTGAAGCTGAAAAAAGTGGTCGGAATTTTTTTGAGAAGTTTGATAAAAGGCGGCGATAAACACCAGCTGAAGAAGCCAACAAAAAAATCATTTCTATAA

mRNA sequence

ATGGCCTATGGCCTTTCCATTTCTGAGGCAATGGAGAGAGAGAGCATTTCTCATAAACACTATTATGATATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATTCAGGATGAGCTTCAAAATCTCACACCGAATAACGAAGATCTTAATGTTGATAATAGAGATCGATTTGGGAGTCCTACAACAAAAGGGTTCGAGAACAATGAACATAAAAGCTTGAAGCAACTCATGAATGAAGAAGAGAAAGCAGAGACGAGGTTGGGAGAAGACGAGGGCGGCCGACGAAGGAACTCACTTGGCCAACACTTTAGTAAAGAAGAGATGAACAAAAATCTTCAAATTGTGAAGAAACAACATCGAGATGGACTACAAGGAGTGAAGCTGAAAAAAGTGGTCGGAATTTTTTTGAGAAGTTTGATAAAAGGCGGCGATAAACACCAGCTGAAGAAGCCAACAAAAAAATCATTTCTATAA

Coding sequence (CDS)

ATGGCCTATGGCCTTTCCATTTCTGAGGCAATGGAGAGAGAGAGCATTTCTCATAAACACTATTATGATATCTCCATGTCAAAGAGAACAAGAAAGCCAGCCAAAATTCAGGATGAGCTTCAAAATCTCACACCGAATAACGAAGATCTTAATGTTGATAATAGAGATCGATTTGGGAGTCCTACAACAAAAGGGTTCGAGAACAATGAACATAAAAGCTTGAAGCAACTCATGAATGAAGAAGAGAAAGCAGAGACGAGGTTGGGAGAAGACGAGGGCGGCCGACGAAGGAACTCACTTGGCCAACACTTTAGTAAAGAAGAGATGAACAAAAATCTTCAAATTGTGAAGAAACAACATCGAGATGGACTACAAGGAGTGAAGCTGAAAAAAGTGGTCGGAATTTTTTTGAGAAGTTTGATAAAAGGCGGCGATAAACACCAGCTGAAGAAGCCAACAAAAAAATCATTTCTATAA

Protein sequence

MAYGLSISEAMERESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNEHKSLKQLMNEEEKAETRLGEDEGGRRRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLKKVVGIFLRSLIKGGDKHQLKKPTKKSFL
BLAST of Carg13480 vs. NCBI nr
Match: XP_022959694.1 (uncharacterized protein LOC111460691 [Cucurbita moschata])

HSP 1 Score: 293.5 bits (750), Expect = 4.3e-76
Identity = 152/157 (96.82%), Postives = 152/157 (96.82%), Query Frame = 0

Query: 1   MAYGLSISEAMERESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGS 60
           MAYGLSISEAME ESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGS
Sbjct: 1   MAYGLSISEAMESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGS 60

Query: 61  PTTKGFENNEHKSLKQLMNEEEKAETRLGEDEGGRRRNSLGQHFSKEEMNKNLQIVKKQH 120
           PTTKGFENNEHKSLKQLMNEEEKAETRLGEDEGGR RNSLGQHFSKEEMNKNLQIVKKQH
Sbjct: 61  PTTKGFENNEHKSLKQLMNEEEKAETRLGEDEGGRGRNSLGQHFSKEEMNKNLQIVKKQH 120

Query: 121 RDGLQGVKLKKVVGIFLRSLIKGGDKHQLKKPTKKSF 158
           RDGLQGVKLKKVVG FLRSLIKGGDKHQLKKPTK  F
Sbjct: 121 RDGLQGVKLKKVVGNFLRSLIKGGDKHQLKKPTKNHF 157

BLAST of Carg13480 vs. NCBI nr
Match: XP_023004344.1 (uncharacterized protein LOC111497689 [Cucurbita maxima])

HSP 1 Score: 290.8 bits (743), Expect = 2.8e-75
Identity = 151/158 (95.57%), Postives = 152/158 (96.20%), Query Frame = 0

Query: 1   MAYGLSISEAMERESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGS 60
           M YGLSI EAME ESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRD+FGS
Sbjct: 1   MDYGLSICEAMESESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDQFGS 60

Query: 61  PTTKGFENNEHKSLKQLMNEEEKAETRLGEDEGGRRRNSLGQHFSKEEMNKNLQIVKKQH 120
           PTTKGFENNEHKSLKQLMNEEEKAETRLGEDEG R RNSLGQHFSKEEMNKNLQIVKKQH
Sbjct: 61  PTTKGFENNEHKSLKQLMNEEEKAETRLGEDEGSRGRNSLGQHFSKEEMNKNLQIVKKQH 120

Query: 121 RDGLQGVKLKKVVGIFLRSLIKGGDKHQLKKPTKKSFL 159
           RDGLQGVKLKKVVG FLRSLIKGGDKHQLKKPTKKSFL
Sbjct: 121 RDGLQGVKLKKVVGNFLRSLIKGGDKHQLKKPTKKSFL 158

BLAST of Carg13480 vs. NCBI nr
Match: XP_008461224.1 (PREDICTED: uncharacterized protein LOC103499874 [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 2.9e-40
Identity = 108/153 (70.59%), Postives = 120/153 (78.43%), Query Frame = 0

Query: 11  MERESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLN-VDNRDRFGSPTTKGFENN 70
           M  ESISHK +YDISMSKRTRKPAKIQDELQN T  ++ L+ +D  DR  S       NN
Sbjct: 1   MGSESISHKQHYDISMSKRTRKPAKIQDELQNFTSKDDGLSIIDKGDRSES-------NN 60

Query: 71  EHKSLKQLMNEEEKAETRLGEDEGGRRRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKL 130
           +HKSLKQL++ E KAETRL  DEG R RNSLGQHFSKEE+N NLQIVKKQH+DGLQGVKL
Sbjct: 61  DHKSLKQLISGEGKAETRL--DEGNRERNSLGQHFSKEEIN-NLQIVKKQHQDGLQGVKL 120

Query: 131 KKVVGIFLRSLIKGGDKHQ---LKKPT-KKSFL 159
           KKVVG FLR+LIKGG  HQ   +KKPT KKSFL
Sbjct: 121 KKVVGKFLRNLIKGGGDHQHQLMKKPTRKKSFL 143

BLAST of Carg13480 vs. NCBI nr
Match: XP_022152235.1 (uncharacterized protein LOC111020003 [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 6.4e-40
Identity = 100/149 (67.11%), Postives = 119/149 (79.87%), Query Frame = 0

Query: 11  MERESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 70
           M  ESISH+ +YDISMSKRTRKPAKI+DELQNL+ N +DL   +  +  SP TKGFENN+
Sbjct: 1   MGSESISHQRHYDISMSKRTRKPAKIRDELQNLSLNKDDLLPSH--QVESPPTKGFENND 60

Query: 71  HKSLKQLMNEEEKAETRLGEDEGGRRRNSLGQHFSKEEMNKNLQIVK-KQHRDGLQGVKL 130
           HKSLKQL+  E KAET+ G DEGGR R+SLGQHF++++   NLQ+V+ KQ  DGLQ VKL
Sbjct: 61  HKSLKQLITGEGKAETKSGADEGGRGRSSLGQHFNEDK--NNLQMVRSKQQPDGLQRVKL 120

Query: 131 KKVVGIFLRSLIKGGDKHQLKKPTKKSFL 159
           KKVVG FLR+LIKGGD+H LKKP KKS L
Sbjct: 121 KKVVGKFLRNLIKGGDQHHLKKPRKKSLL 145

BLAST of Carg13480 vs. NCBI nr
Match: XP_022991938.1 (uncharacterized protein LOC111488430 [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 1.9e-36
Identity = 101/145 (69.66%), Postives = 115/145 (79.31%), Query Frame = 0

Query: 16  ISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNEHKSLK 75
           +SHK +YDISMSKRTRKPAKIQDE+Q  T NN+    D  ++FG   TKGFENN+HKSLK
Sbjct: 1   MSHKRHYDISMSKRTRKPAKIQDEIQTGTLNND----DQYEKFG---TKGFENNDHKSLK 60

Query: 76  QLMNEEEKAETRLGEDEGGRRRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLKKVVGI 135
           QL+N E K  T +G DE  R RNSLG+HFS+EE+N  LQIVKKQH DGLQGVKLKKVVG 
Sbjct: 61  QLINGEGK--TEIGSDERNRDRNSLGKHFSEEEIN-GLQIVKKQHEDGLQGVKLKKVVGK 120

Query: 136 FLRSLIKGG-DKHQL-KKPT-KKSF 158
           FLR+LIKGG D+HQL KK T KKSF
Sbjct: 121 FLRNLIKGGSDQHQLMKKATRKKSF 135

BLAST of Carg13480 vs. TrEMBL
Match: tr|A0A1S3CFF2|A0A1S3CFF2_CUCME (uncharacterized protein LOC103499874 OS=Cucumis melo OX=3656 GN=LOC103499874 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.9e-40
Identity = 108/153 (70.59%), Postives = 120/153 (78.43%), Query Frame = 0

Query: 11  MERESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLN-VDNRDRFGSPTTKGFENN 70
           M  ESISHK +YDISMSKRTRKPAKIQDELQN T  ++ L+ +D  DR  S       NN
Sbjct: 1   MGSESISHKQHYDISMSKRTRKPAKIQDELQNFTSKDDGLSIIDKGDRSES-------NN 60

Query: 71  EHKSLKQLMNEEEKAETRLGEDEGGRRRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKL 130
           +HKSLKQL++ E KAETRL  DEG R RNSLGQHFSKEE+N NLQIVKKQH+DGLQGVKL
Sbjct: 61  DHKSLKQLISGEGKAETRL--DEGNRERNSLGQHFSKEEIN-NLQIVKKQHQDGLQGVKL 120

Query: 131 KKVVGIFLRSLIKGGDKHQ---LKKPT-KKSFL 159
           KKVVG FLR+LIKGG  HQ   +KKPT KKSFL
Sbjct: 121 KKVVGKFLRNLIKGGGDHQHQLMKKPTRKKSFL 143

BLAST of Carg13480 vs. TrEMBL
Match: tr|A0A0A0KBK8|A0A0A0KBK8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430160 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36
Identity = 103/153 (67.32%), Postives = 116/153 (75.82%), Query Frame = 0

Query: 11  MERESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 70
           M  ESISHK +YDISMSKRTRKPAKIQDELQ L  N++DL +  +        +   NN+
Sbjct: 1   MGSESISHKQHYDISMSKRTRKPAKIQDELQILPTNDDDLIIIGKG------DQSEINND 60

Query: 71  HKSLKQLMNEEEKAETRLGEDEGGRRRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 130
           HKSLKQL++ E KAE R   DEG R RNSLGQHFSKEE+N NLQIVKKQH+DGLQGVKLK
Sbjct: 61  HKSLKQLISGEGKAEIR--SDEGNRERNSLGQHFSKEEIN-NLQIVKKQHQDGLQGVKLK 120

Query: 131 KVVGIFLRSLIK-GGDKHQ---LKKP-TKKSFL 159
           KVVG FLR+LIK GGD HQ   +KKP  KKSFL
Sbjct: 121 KVVGKFLRNLIKGGGDHHQHQLMKKPIRKKSFL 144

BLAST of Carg13480 vs. TrEMBL
Match: tr|W9RIE8|W9RIE8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002670 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.1e-10
Identity = 50/122 (40.98%), Postives = 75/122 (61.48%), Query Frame = 0

Query: 19  KHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNEHKSLKQLM 78
           K  YDI+MS+RTR+P K++D  +N   +    +V +            E N+ KSLK+L+
Sbjct: 5   KRPYDITMSRRTRRPPKVRDANENSPWDCPPRDVAHES----------EENDRKSLKELI 64

Query: 79  NEEEKAETRLGEDEGGRRRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLKKVVGIFLR 138
           + +EK +   G DEGG+ R+SLGQHF++ E  K LQIV  Q ++ L G+KLKK+V  + +
Sbjct: 65  DGDEKTKAVSGGDEGGKGRSSLGQHFTEGE--KQLQIVGVQQKESLHGLKLKKMVSRYAK 114

Query: 139 SL 141
            L
Sbjct: 125 VL 114

BLAST of Carg13480 vs. TrEMBL
Match: tr|A0A1S3U441|A0A1S3U441_VIGRR (uncharacterized protein LOC106761708 OS=Vigna radiata var. radiata OX=3916 GN=LOC106761708 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = 0

Query: 11  MERESISHKHYYDISMSKRTRKPA-KIQ-DELQNLTPNNEDLNVDNRDRFG-SPTTKGFE 70
           ME +S S K  YDI+MS+RTRK    +Q +E       +E L V+     G     K   
Sbjct: 1   MEVQSPSVKRPYDITMSRRTRKQQFSVQGNEKPKSATGDEKLTVETAQSNGIIAEVKHGG 60

Query: 71  NNEHKSLKQLM--NEEEKAETRLGEDEGGR-RRNSLGQHFSKEEMNKNLQIVKKQHRDGL 130
            ++HKSLKQL+  ++ E+ +     DEGG+  RNSLG+HFS+EE  ++LQ+V+ Q +D L
Sbjct: 61  ESDHKSLKQLIIGDDNERMKGNNNSDEGGKGSRNSLGEHFSEEEKQQHLQLVRMQQKDNL 120

Query: 131 QGVKLKKVVGIFLRSL 141
           QG+K KK+V  + + L
Sbjct: 121 QGLKFKKLVSRYAKVL 136

BLAST of Carg13480 vs. TrEMBL
Match: tr|A0A067JCA4|A0A067JCA4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05256 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 59/153 (38.56%), Postives = 79/153 (51.63%), Query Frame = 0

Query: 11  MERESISHKHYYDISMSKRTRKPAKIQDELQNLTPNNEDLNVDNRDRFGSPTTKGFENNE 70
           M  E    KH YDI+MSKRTRKP K      N+   + DL        G        + +
Sbjct: 1   MGSECNPSKHRYDITMSKRTRKPLK-----SNMPQAHADLR-------GEDNLLAKVDED 60

Query: 71  HKSLKQLMNEEEKAETRLGEDEGGRRRNSLGQHFSKEEMNKNLQIVKKQHRDGLQGVKLK 130
            KSLKQL+N          ED   R RNSLGQHFS+EE  K LQ++++Q++ GLQ VKLK
Sbjct: 61  RKSLKQLINGIANNVEETKEDSENRGRNSLGQHFSEEE--KQLQLMRRQNQQGLQAVKLK 120

Query: 131 KVVGIFLRSL-----IKGGDKHQLKKPTKKSFL 159
            ++G +++ L     +K        +P KK  L
Sbjct: 121 GIMGRYVKVLSHLIKVKRDSTRTNIRPRKKPVL 139

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022959694.14.3e-7696.82uncharacterized protein LOC111460691 [Cucurbita moschata][more]
XP_023004344.12.8e-7595.57uncharacterized protein LOC111497689 [Cucurbita maxima][more]
XP_008461224.12.9e-4070.59PREDICTED: uncharacterized protein LOC103499874 [Cucumis melo][more]
XP_022152235.16.4e-4067.11uncharacterized protein LOC111020003 [Momordica charantia][more]
XP_022991938.11.9e-3669.66uncharacterized protein LOC111488430 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CFF2|A0A1S3CFF2_CUCME1.9e-4070.59uncharacterized protein LOC103499874 OS=Cucumis melo OX=3656 GN=LOC103499874 PE=... [more]
tr|A0A0A0KBK8|A0A0A0KBK8_CUCSA2.9e-3667.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430160 PE=4 SV=1[more]
tr|W9RIE8|W9RIE8_9ROSA2.1e-1040.98Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002670 PE=4 SV=1[more]
tr|A0A1S3U441|A0A1S3U441_VIGRR3.5e-1041.18uncharacterized protein LOC106761708 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
tr|A0A067JCA4|A0A067JCA4_JATCU3.5e-1038.56Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05256 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13480-RACarg13480-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..109

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg13480Carg18714Silver-seed gourdcarcarB379