CSPI04G21540 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCAAATCAAATCAAGAAAAGAAAACTTAAAAAGTAAATAATGAAAAAAATAAATTCTCTATTGAGAAAATGCAAAAGCCTTTCAAGGCAATTGGGAAGATCTTCATCATACAGCAGCTTGAGATCAAAGTCCACAAGAGAAGATCTTTGGGTTTGTGAAAAACAAGAAGAAGACTTTGAGCAACAAATTGAGCAAAAGGTGAGTGGCAGTAATGTAATTTTATATGTTGGAAGTACAAGAAAGAAATATGCAATAAATTCAAAATATTTGAGCCATCCTTTGTTAAATGCTCTTATTGATAAATCCAAGTCTAAGAAATTAGTTGATGATGATGATGATGATGATGGACATGAAGATGATGAAGAATGTATTTTAGTGAGATGTGAAGTTGTTTTATTTGATCATCTTCTGTGGATGTTGGAAAATTCAGATCCAAATATTACTTTTGATTCTAATTTGGAGGAATTGGCTGAACTTTATGTTTTTTAGGATTTG ATGAAAAAAATAAATTCTCTATTGAGAAAATGCAAAAGCCTTTCAAGGCAATTGGGAAGATCTTCATCATACAGCAGCTTGAGATCAAAGTCCACAAGAGAAGATCTTTGGGTTTGTGAAAAACAAGAAGAAGACTTTGAGCAACAAATTGAGCAAAAGGTGAGTGGCAGTAATGTAATTTTATATGTTGGAAGTACAAGAAAGAAATATGCAATAAATTCAAAATATTTGAGCCATCCTTTGTTAAATGCTCTTATTGATAAATCCAAGTCTAAGAAATTAGTTGATGATGATGATGATGATGATGGACATGAAGATGATGAAGAATGTATTTTAGTGAGATGTGAAGTTGTTTTATTTGATCATCTTCTGTGGATGTTGGAAAATTCAGATCCAAATATTACTTTTGATTCTAATTTGGAGGAATTGGCTGAACTTTATGTTTTTTAG ATGAAAAAAATAAATTCTCTATTGAGAAAATGCAAAAGCCTTTCAAGGCAATTGGGAAGATCTTCATCATACAGCAGCTTGAGATCAAAGTCCACAAGAGAAGATCTTTGGGTTTGTGAAAAACAAGAAGAAGACTTTGAGCAACAAATTGAGCAAAAGGTGAGTGGCAGTAATGTAATTTTATATGTTGGAAGTACAAGAAAGAAATATGCAATAAATTCAAAATATTTGAGCCATCCTTTGTTAAATGCTCTTATTGATAAATCCAAGTCTAAGAAATTAGTTGATGATGATGATGATGATGATGGACATGAAGATGATGAAGAATGTATTTTAGTGAGATGTGAAGTTGTTTTATTTGATCATCTTCTGTGGATGTTGGAAAATTCAGATCCAAATATTACTTTTGATTCTAATTTGGAGGAATTGGCTGAACTTTATGTTTTTTAG
BLAST of CSPI04G21540 vs. TrEMBL
Match: B9RI47_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576420 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 2.4e-39 Identity = 95/149 (63.76%), Postives = 112/149 (75.17%), Query Frame = 1
BLAST of CSPI04G21540 vs. TrEMBL
Match: B9I0J2_POPTR (Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0011s14660g PE=4 SV=2) HSP 1 Score: 163.7 bits (413), Expect = 1.7e-37 Identity = 91/149 (61.07%), Postives = 110/149 (73.83%), Query Frame = 1
BLAST of CSPI04G21540 vs. TrEMBL
Match: B9GK00_POPTR (Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0001s46220g PE=4 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35 Identity = 89/149 (59.73%), Postives = 110/149 (73.83%), Query Frame = 1
BLAST of CSPI04G21540 vs. TrEMBL
Match: A0A067DWD4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041846mg PE=4 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35 Identity = 92/148 (62.16%), Postives = 106/148 (71.62%), Query Frame = 1
BLAST of CSPI04G21540 vs. TrEMBL
Match: V4TRE9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023709mg PE=4 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35 Identity = 92/148 (62.16%), Postives = 106/148 (71.62%), Query Frame = 1
BLAST of CSPI04G21540 vs. TAIR10
Match: AT3G12955.1 (AT3G12955.1 SAUR-like auxin-responsive protein family ) HSP 1 Score: 106.3 bits (264), Expect = 1.7e-23 Identity = 67/148 (45.27%), Postives = 96/148 (64.86%), Query Frame = 1
BLAST of CSPI04G21540 vs. TAIR10
Match: AT1G17345.1 (AT1G17345.1 SAUR-like auxin-responsive protein family ) HSP 1 Score: 71.6 bits (174), Expect = 4.5e-13 Identity = 37/95 (38.95%), Postives = 59/95 (62.11%), Query Frame = 1
BLAST of CSPI04G21540 vs. TAIR10
Match: AT1G72430.1 (AT1G72430.1 SAUR-like auxin-responsive protein family ) HSP 1 Score: 70.9 bits (172), Expect = 7.8e-13 Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 1
BLAST of CSPI04G21540 vs. TAIR10
Match: AT5G20820.1 (AT5G20820.1 SAUR-like auxin-responsive protein family ) HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10 Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = 1
BLAST of CSPI04G21540 vs. NCBI nr
Match: gi|778695308|ref|XP_011653970.1| (PREDICTED: uncharacterized protein LOC105435277 [Cucumis sativus]) HSP 1 Score: 287.0 bits (733), Expect = 2.0e-74 Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 1
BLAST of CSPI04G21540 vs. NCBI nr
Match: gi|659087142|ref|XP_008444291.1| (PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo]) HSP 1 Score: 261.5 bits (667), Expect = 8.8e-67 Identity = 140/155 (90.32%), Postives = 144/155 (92.90%), Query Frame = 1
BLAST of CSPI04G21540 vs. NCBI nr
Match: gi|255544710|ref|XP_002513416.1| (PREDICTED: uncharacterized protein LOC8272635 [Ricinus communis]) HSP 1 Score: 169.9 bits (429), Expect = 3.5e-39 Identity = 95/149 (63.76%), Postives = 112/149 (75.17%), Query Frame = 1
BLAST of CSPI04G21540 vs. NCBI nr
Match: gi|566195513|ref|XP_002317621.2| (auxin-responsive family protein [Populus trichocarpa]) HSP 1 Score: 163.7 bits (413), Expect = 2.5e-37 Identity = 91/149 (61.07%), Postives = 110/149 (73.83%), Query Frame = 1
BLAST of CSPI04G21540 vs. NCBI nr
Match: gi|224056745|ref|XP_002299002.1| (auxin-responsive family protein [Populus trichocarpa]) HSP 1 Score: 157.5 bits (397), Expect = 1.8e-35 Identity = 89/149 (59.73%), Postives = 110/149 (73.83%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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