Cp4.1LG06g05830 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g05830
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAuxin responsive SAUR protein
LocationCp4.1LG06 : 3529822 .. 3530154 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAACACGAAGAACGCGAAGAACACGAAGAACGCGAAGAACACGAAGGGTTTGAAAAGGTGAGTGGCAGTAATGTAATTATCTATGTTGGGAGTACAAGGAAGAGATATGCAATAAGTTCAAAGTATTTGAGCCATCCTTTGCTTAATGCTCTTATTGATAAATCAAAGCCTCCTAAGGGTAATAATGAAGATGATGATGATGAGTGTATTTCAGTGAGATGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAGAATTCTGATCCGAATATTTGTTTTGATTCTAATTTAGAGGAATTGGCTGAGCTTTATGTGTTTTAA

mRNA sequence

ATGGAAGAACACGAAGAACGCGAAGAACACGAAGAACGCGAAGAACACGAAGGGTTTGAAAAGGTGAGTGGCAGTAATGTAATTATCTATGTTGGGAGTACAAGGAAGAGATATGCAATAAGTTCAAAGTATTTGAGCCATCCTTTGCTTAATGCTCTTATTGATAAATCAAAGCCTCCTAAGGGTAATAATGAAGATGATGATGATGAGTGTATTTCAGTGAGATGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAGAATTCTGATCCGAATATTTGTTTTGATTCTAATTTAGAGGAATTGGCTGAGCTTTATGTGTTTTAA

Coding sequence (CDS)

ATGGAAGAACACGAAGAACGCGAAGAACACGAAGAACGCGAAGAACACGAAGGGTTTGAAAAGGTGAGTGGCAGTAATGTAATTATCTATGTTGGGAGTACAAGGAAGAGATATGCAATAAGTTCAAAGTATTTGAGCCATCCTTTGCTTAATGCTCTTATTGATAAATCAAAGCCTCCTAAGGGTAATAATGAAGATGATGATGATGAGTGTATTTCAGTGAGATGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAGAATTCTGATCCGAATATTTGTTTTGATTCTAATTTAGAGGAATTGGCTGAGCTTTATGTGTTTTAA

Protein sequence

MEEHEEREEHEEREEHEGFEKVSGSNVIIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDDECISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
Homology
[Close]
BLAST of Cp4.1LG06g05830 vs. TrEMBL
Match: B9RI47_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576420 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-23
Identity = 64/103 (62.14%), Postives = 75/103 (72.82%), Query Frame = 1 

Query: 8   EEHEEREEHEGFEKVSGSNVIIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDD 67
           +  EE EEH+           ++VGSTRKRY ISSKYLSHPL+NALI KSK  +G     
Sbjct: 39  DHKEEDEEHQS---------TLFVGSTRKRYVISSKYLSHPLVNALIQKSKQRQG----- 98

Query: 68  DDECISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 111
            +E + V+CEVVLFDHLLWMLEN+DPN+ FDS LEELAELYVF
Sbjct: 99  -EEILVVKCEVVLFDHLLWMLENADPNLSFDS-LEELAELYVF 125

[Close]
BLAST of Cp4.1LG06g05830 vs. TrEMBL
Match: A0A061FAQ6_THECC (SAUR family protein OS=Theobroma cacao GN=TCM_032432 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-22
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 1 

Query: 29  IYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDDECISVRCEVVLFDHLLWML 88
           IYVGSTRKRY IS+KYL HPLLNALI++SK   G       E I V+CEVVLFDHLLWML
Sbjct: 50  IYVGSTRKRYVISAKYLKHPLLNALIERSKQKHGG------EDILVKCEVVLFDHLLWML 109

Query: 89  ENSDPNICFDSNLEELAELYVF 111
           ENSDPN+   S LEELA+LYVF
Sbjct: 110 ENSDPNLILGS-LEELADLYVF 124

[Close]
BLAST of Cp4.1LG06g05830 vs. TrEMBL
Match: A0A151UFN6_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_048986 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.5e-22
Identity = 56/82 (68.29%), Postives = 64/82 (78.05%), Query Frame = 1 

Query: 29  IYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDDECISVRCEVVLFDHLLWML 88
           I+VGSTRKRY IS KYL+HPLLNALI+KS     N ++ D+  + V CEVVLFDHLLWML
Sbjct: 51  IFVGSTRKRYVISKKYLNHPLLNALINKS-----NQKESDESVVMVNCEVVLFDHLLWML 110

Query: 89  ENSDPNICFDSNLEELAELYVF 111
           EN+DP    DS LEELAELYVF
Sbjct: 111 ENADPKFSSDS-LEELAELYVF 126

[Close]
BLAST of Cp4.1LG06g05830 vs. TrEMBL
Match: B9GK00_POPTR (Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0001s46220g PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-21
Identity = 59/101 (58.42%), Postives = 74/101 (73.27%), Query Frame = 1 

Query: 10  HEEREEHEGFEKVSGSNVIIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDD 69
           H+ ++E E       ++  I+VGSTRKRY ISSKYLSHPL+NALI+KSK   G     +D
Sbjct: 40  HDHKQEDE-------NHATIFVGSTRKRYVISSKYLSHPLVNALIEKSKQKPG-----ED 99

Query: 70  ECISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 111
             + VRCEVV FDHLLWMLEN+DP++ F S LEELA+LY+F
Sbjct: 100 SILVVRCEVVFFDHLLWMLENADPSVNFGS-LEELADLYMF 127

[Close]
BLAST of Cp4.1LG06g05830 vs. TrEMBL
Match: I1JKC5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G014800 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-21
Identity = 61/100 (61.00%), Postives = 72/100 (72.00%), Query Frame = 1 

Query: 11  EEREEHEGFEKVSGSNVIIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDDE 70
           EE  E  G ++      +++VGSTRKRY ISSKYL+HPLL ALI+KSK  KG+    D+ 
Sbjct: 34  EELREGNGMQEGEHCETVLFVGSTRKRYVISSKYLNHPLLKALINKSKQ-KGS----DES 93

Query: 71  CISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 111
            + V CEVVLFDHLLWMLEN+DP    DS LEELAELYVF
Sbjct: 94  VLVVNCEVVLFDHLLWMLENADPKFGSDS-LEELAELYVF 127

[Close]
BLAST of Cp4.1LG06g05830 vs. TAIR10
Match: AT3G12955.1 (AT3G12955.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 82.0 bits (201), Expect = 2.5e-16
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1 

Query: 29  IYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDDECISVRCEVVLFDHLLWML 88
           + VG T+K Y IS K+L HPLLNAL++K +  + ++ +D    I+V+CEVVLFDHLLWML
Sbjct: 58  VLVGRTKKPYLISKKHLKHPLLNALVEKQQRYEEDDNEDGSCIITVKCEVVLFDHLLWML 117

Query: 89  ENSDPNICFDSNLEELAELYV 110
           E  D     +S L++ A LY+
Sbjct: 118 EYGDEVHILES-LDDFAHLYL 137

[Close]
BLAST of Cp4.1LG06g05830 vs. TAIR10
Match: AT1G17345.1 (AT1G17345.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-14
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 1 

Query: 28  IIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDDECISVRCEVVLFDHLLWM 87
           ++YVG +R+ Y +SS  ++HPL   L+D+S   +   E  D E + V CEVVLF+HLLWM
Sbjct: 46  VVYVGKSRRPYMLSSHVIAHPLFQELLDRSS--RFIEERHDQETVLVACEVVLFEHLLWM 105

Query: 88  LENS-----DPNICFDSNLEELAELYVF 111
           L+NS     D +     ++EELAE Y +
Sbjct: 106 LKNSSSDHGDEDDRERGSVEELAEFYTY 131

[Close]
BLAST of Cp4.1LG06g05830 vs. TAIR10
Match: AT1G72430.1 (AT1G72430.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-12
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 1 

Query: 28  IIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDDECISVRCEVVLFDHLLWM 87
           ++YVG TR+ Y +    +SHPL   L+D+S     +   + D  I V CEVVLF+HLLWM
Sbjct: 45  VVYVGQTRRPYMLRPDIISHPLFQELVDRSS----SRSIEQDREIVVACEVVLFEHLLWM 104

Query: 88  LENSDPNICFDSNLEELAELYVF 111
           L++         ++EELAE Y +
Sbjct: 105 LKSGQEG----GSVEELAEFYTY 119

[Close]
BLAST of Cp4.1LG06g05830 vs. TAIR10
Match: AT5G20820.1 (AT5G20820.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-12
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 1 

Query: 29  IYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDDECISVRCEVVLFDHLLWML 88
           +YVG TR+ Y +SS  +SHPL   L              +D  ISV CEVVLF+HLLWML
Sbjct: 51  VYVGRTRRTYHVSSDVVSHPLFQQLAAVD-----GGCGSEDGSISVSCEVVLFEHLLWML 110

Query: 89  ENSDPNICFDSNLEELAELY 109
           EN+D +     ++ EL E Y
Sbjct: 111 ENADADESRPESVYELVEFY 125

[Close]
BLAST of Cp4.1LG06g05830 vs. NCBI nr
Match: gi|778695308|ref|XP_011653970.1| (PREDICTED: uncharacterized protein LOC105435277 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 3.8e-35
Identity = 83/111 (74.77%), Postives = 91/111 (81.98%), Query Frame = 1 

Query: 8   EEHEEREEHEGFEKVSGSNVIIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDD 67
           E+ EE  E +  +KVSGSNVI+YVGSTRK+YAI+SKYLSHPLLNALIDKSK  K  ++DD
Sbjct: 40  EKQEEDFEQQIEQKVSGSNVILYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDD 99

Query: 68  DD--------ECISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 111
           DD        ECI VRCEVVLFDHLLWMLENSDPNI FDSNLEELAELYVF
Sbjct: 100 DDDDGHEDDEECILVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF 150

[Close]
BLAST of Cp4.1LG06g05830 vs. NCBI nr
Match: gi|659087142|ref|XP_008444291.1| (PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 8.8e-32
Identity = 77/114 (67.54%), Postives = 90/114 (78.95%), Query Frame = 1 

Query: 8   EEHEEREEHEGFEKVSGSN-VIIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPK----- 67
           E+ EE  E +  +KVSG+N V++YVGSTRK+YAI+SKYL HPLLNALIDKSK  K     
Sbjct: 40  EKQEEDFEQQFDQKVSGNNNVVLYVGSTRKKYAINSKYLGHPLLNALIDKSKSKKLVDDH 99

Query: 68  -----GNNEDDDDECISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 111
                 +++ DD++CI VRCEVVLFDHLLWMLENSDPNI FDSNLEELAELYVF
Sbjct: 100 DDEHEEHDDGDDEDCILVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF 153

[Close]
BLAST of Cp4.1LG06g05830 vs. NCBI nr
Match: gi|255544710|ref|XP_002513416.1| (PREDICTED: uncharacterized protein LOC8272635 [Ricinus communis])

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-23
Identity = 64/103 (62.14%), Postives = 75/103 (72.82%), Query Frame = 1 

Query: 8   EEHEEREEHEGFEKVSGSNVIIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDD 67
           +  EE EEH+           ++VGSTRKRY ISSKYLSHPL+NALI KSK  +G     
Sbjct: 39  DHKEEDEEHQS---------TLFVGSTRKRYVISSKYLSHPLVNALIQKSKQRQG----- 98

Query: 68  DDECISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 111
            +E + V+CEVVLFDHLLWMLEN+DPN+ FDS LEELAELYVF
Sbjct: 99  -EEILVVKCEVVLFDHLLWMLENADPNLSFDS-LEELAELYVF 125

[Close]
BLAST of Cp4.1LG06g05830 vs. NCBI nr
Match: gi|470116080|ref|XP_004294214.1| (PREDICTED: uncharacterized protein LOC101306122 [Fragaria vesca subsp. vesca])

HSP 1 Score: 112.1 bits (279), Expect = 6.3e-22
Identity = 62/100 (62.00%), Postives = 72/100 (72.00%), Query Frame = 1 

Query: 16  HEGFEKVSGSNVIIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNN----EDDDDEC 75
           HE  ++++     I+VGSTRKRY ISSKYL+HPLLNALIDKS   K  N    +D D E 
Sbjct: 43  HENHQQIT-----IFVGSTRKRYVISSKYLNHPLLNALIDKSSNSKKKNNYRGDDQDHED 102

Query: 76  ISVRCEVVLFDHLLWMLENSDPNICFDS-NLEELAELYVF 111
           I V+CEVVLFDHLLWMLEN DP+    S +LEELA LYVF
Sbjct: 103 ILVKCEVVLFDHLLWMLENGDPSFGGTSESLEELAALYVF 137

[Close]
BLAST of Cp4.1LG06g05830 vs. NCBI nr
Match: gi|590612002|ref|XP_007022262.1| (SAUR family protein [Theobroma cacao])

HSP 1 Score: 112.1 bits (279), Expect = 6.3e-22
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 1 

Query: 29  IYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDDECISVRCEVVLFDHLLWML 88
           IYVGSTRKRY IS+KYL HPLLNALI++SK   G       E I V+CEVVLFDHLLWML
Sbjct: 50  IYVGSTRKRYVISAKYLKHPLLNALIERSKQKHGG------EDILVKCEVVLFDHLLWML 109

Query: 89  ENSDPNICFDSNLEELAELYVF 111
           ENSDPN+   S LEELA+LYVF
Sbjct: 110 ENSDPNLILGS-LEELADLYVF 124

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g05830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g05830 vs. TrEMBL
Match NameE-valueIdentityDescription
B9RI47_RICCO3.0e-2362.14Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576420 PE=4 SV=1[more]
A0A061FAQ6_THECC4.4e-2270.73SAUR family protein OS=Theobroma cacao GN=TCM_032432 PE=4 SV=1[more]
A0A151UFN6_CAJCA7.5e-2268.29Uncharacterized protein OS=Cajanus cajan GN=KK1_048986 PE=4 SV=1[more]
B9GK00_POPTR1.3e-2158.42Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0001s46220g PE=4... [more]
I1JKC5_SOYBN1.3e-2161.00Uncharacterized protein OS=Glycine max GN=GLYMA_03G014800 PE=4 SV=1[more]
BLAST of Cp4.1LG06g05830 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G12955.12.5e-1649.38 SAUR-like auxin-responsive protein family [more]
AT1G17345.13.9e-1443.18 SAUR-like auxin-responsive protein family [more]
AT1G72430.11.3e-1240.96 SAUR-like auxin-responsive protein family [more]
AT5G20820.12.2e-1245.00 SAUR-like auxin-responsive protein family [more]
BLAST of Cp4.1LG06g05830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778695308|ref|XP_011653970.1|3.8e-3574.77PREDICTED: uncharacterized protein LOC105435277 [Cucumis sativus][more]
gi|659087142|ref|XP_008444291.1|8.8e-3267.54PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo][more]
gi|255544710|ref|XP_002513416.1|4.4e-2362.14PREDICTED: uncharacterized protein LOC8272635 [Ricinus communis][more]
gi|470116080|ref|XP_004294214.1|6.3e-2262.00PREDICTED: uncharacterized protein LOC101306122 [Fragaria vesca subsp. vesca][more]
gi|590612002|ref|XP_007022262.1|6.3e-2270.73SAUR family protein [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009733response to auxin
Vocabulary: INTERPRO
TermDefinition
IPR003676SAUR_fam
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g05830.1Cp4.1LG06g05830.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 24..88
score: 6.1
NoneNo IPR availablePANTHERPTHR31374FAMILY NOT NAMEDcoord: 2..110
score: 6.9
NoneNo IPR availablePANTHERPTHR31374:SF46SUBFAMILY NOT NAMEDcoord: 2..110
score: 6.9