CSPI04G21540 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G21540
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	SAUR-like auxin-responsive protein family
Location	Chr4 : 20030603 .. 20031098 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAATCAAATCAAGAAAAGAAAACTTAAAAAGTAAATAATGAAAAAAATAAATTCTCTATTGAGAAAATGCAAAAGCCTTTCAAGGCAATTGGGAAGATCTTCATCATACAGCAGCTTGAGATCAAAGTCCACAAGAGAAGATCTTTGGGTTTGTGAAAAACAAGAAGAAGACTTTGAGCAACAAATTGAGCAAAAGGTGAGTGGCAGTAATGTAATTTTATATGTTGGAAGTACAAGAAAGAAATATGCAATAAATTCAAAATATTTGAGCCATCCTTTGTTAAATGCTCTTATTGATAAATCCAAGTCTAAGAAATTAGTTGATGATGATGATGATGATGATGGACATGAAGATGATGAAGAATGTATTTTAGTGAGATGTGAAGTTGTTTTATTTGATCATCTTCTGTGGATGTTGGAAAATTCAGATCCAAATATTACTTTTGATTCTAATTTGGAGGAATTGGCTGAACTTTATGTTTTTTAGGATTTG

mRNA sequence

ATGAAAAAAATAAATTCTCTATTGAGAAAATGCAAAAGCCTTTCAAGGCAATTGGGAAGATCTTCATCATACAGCAGCTTGAGATCAAAGTCCACAAGAGAAGATCTTTGGGTTTGTGAAAAACAAGAAGAAGACTTTGAGCAACAAATTGAGCAAAAGGTGAGTGGCAGTAATGTAATTTTATATGTTGGAAGTACAAGAAAGAAATATGCAATAAATTCAAAATATTTGAGCCATCCTTTGTTAAATGCTCTTATTGATAAATCCAAGTCTAAGAAATTAGTTGATGATGATGATGATGATGATGGACATGAAGATGATGAAGAATGTATTTTAGTGAGATGTGAAGTTGTTTTATTTGATCATCTTCTGTGGATGTTGGAAAATTCAGATCCAAATATTACTTTTGATTCTAATTTGGAGGAATTGGCTGAACTTTATGTTTTTTAG

Coding sequence (CDS)

ATGAAAAAAATAAATTCTCTATTGAGAAAATGCAAAAGCCTTTCAAGGCAATTGGGAAGATCTTCATCATACAGCAGCTTGAGATCAAAGTCCACAAGAGAAGATCTTTGGGTTTGTGAAAAACAAGAAGAAGACTTTGAGCAACAAATTGAGCAAAAGGTGAGTGGCAGTAATGTAATTTTATATGTTGGAAGTACAAGAAAGAAATATGCAATAAATTCAAAATATTTGAGCCATCCTTTGTTAAATGCTCTTATTGATAAATCCAAGTCTAAGAAATTAGTTGATGATGATGATGATGATGATGGACATGAAGATGATGAAGAATGTATTTTAGTGAGATGTGAAGTTGTTTTATTTGATCATCTTCTGTGGATGTTGGAAAATTCAGATCCAAATATTACTTTTGATTCTAATTTGGAGGAATTGGCTGAACTTTATGTTTTTTAG

Homology

[Close]

BLAST of CSPI04G21540 vs. TrEMBL
Match: B9RI47_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576420 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.4e-39
Identity = 95/149 (63.76%), Postives = 112/149 (75.17%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60
           MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTRE+LW   K+E++  Q            
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREELWGDHKEEDEEHQS----------T 60

Query: 61  LYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDGHEDDEECILVRCEVVLF 120
           L+VGSTRK+Y I+SKYLSHPL+NALI KSK ++              EE ++V+CEVVLF
Sbjct: 61  LFVGSTRKRYVISSKYLSHPLVNALIQKSKQRQ-------------GEEILVVKCEVVLF 120

Query: 121 DHLLWMLENSDPNITFDSNLEELAELYVF 150
           DHLLWMLEN+DPN++FDS LEELAELYVF
Sbjct: 121 DHLLWMLENADPNLSFDS-LEELAELYVF 125

[Close]

BLAST of CSPI04G21540 vs. TrEMBL
Match: B9I0J2_POPTR (Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0011s14660g PE=4 SV=2)

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-37
Identity = 91/149 (61.07%), Postives = 110/149 (73.83%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60
           MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW   KQE++  + I          
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREDLWGDHKQEDENHETI---------- 60

Query: 61  LYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDGHEDDEECILVRCEVVLF 120
            +VGSTRK+Y I+SKYLSHPL+NALI+KS+ K              ++  ++V+CEVV F
Sbjct: 61  -FVGSTRKRYVISSKYLSHPLVNALIEKSRQK------------PGEDNILVVKCEVVFF 120

Query: 121 DHLLWMLENSDPNITFDSNLEELAELYVF 150
           DHLLWMLEN+DPN +FDS LEELA+LY+F
Sbjct: 121 DHLLWMLENADPNASFDS-LEELADLYMF 125

[Close]

BLAST of CSPI04G21540 vs. TrEMBL
Match: B9GK00_POPTR (Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0001s46220g PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35
Identity = 89/149 (59.73%), Postives = 110/149 (73.83%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60
           MKKI+ +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW       D +Q+ E     ++  
Sbjct: 1   MKKISLILRKCKSLSRQLGRSSSYSSLRSKSTREDLW----GHHDHKQEDE-----NHAT 60

Query: 61  LYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDGHEDDEECILVRCEVVLF 120
           ++VGSTRK+Y I+SKYLSHPL+NALI+KSK K              ++  ++VRCEVV F
Sbjct: 61  IFVGSTRKRYVISSKYLSHPLVNALIEKSKQK------------PGEDSILVVRCEVVFF 120

Query: 121 DHLLWMLENSDPNITFDSNLEELAELYVF 150
           DHLLWMLEN+DP++ F S LEELA+LY+F
Sbjct: 121 DHLLWMLENADPSVNFGS-LEELADLYMF 127

[Close]

BLAST of CSPI04G21540 vs. TrEMBL
Match: A0A067DWD4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041846mg PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35
Identity = 92/148 (62.16%), Postives = 106/148 (71.62%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSN-V 60
           MKKI  LLRKCKSLSRQLGRSSSYSSLRSKSTR+++W         +QQI +     N  
Sbjct: 1   MKKITLLLRKCKSLSRQLGRSSSYSSLRSKSTRDEIW--------GDQQIMKHAGDENYA 60

Query: 61  ILYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDGHEDDEECILVRCEVVL 120
            ++VGSTRK+Y INSKYL+HPLLNALI+KSK K                E ILV+CEVVL
Sbjct: 61  TIFVGSTRKRYVINSKYLNHPLLNALIEKSKQK-------------HGGEFILVKCEVVL 120

Query: 121 FDHLLWMLENSDPNITFDSNLEELAELY 148
           FDHLLWMLEN+DPN+  DS LEELA+LY
Sbjct: 121 FDHLLWMLENADPNLILDS-LEELADLY 126

[Close]

BLAST of CSPI04G21540 vs. TrEMBL
Match: V4TRE9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023709mg PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35
Identity = 92/148 (62.16%), Postives = 106/148 (71.62%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSN-V 60
           MKKIN LLRKCKSLSRQLGRSSSYSSLRSKSTR+++W         +QQI +     N  
Sbjct: 1   MKKINLLLRKCKSLSRQLGRSSSYSSLRSKSTRDEIW--------GDQQIMKHAGDENYA 60

Query: 61  ILYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDGHEDDEECILVRCEVVL 120
            ++VGS RK+Y INSKYL+HPLLNALI+KSK K                E ILV+CEVVL
Sbjct: 61  TIFVGSRRKRYVINSKYLNHPLLNALIEKSKQK-------------HGGEFILVKCEVVL 120

Query: 121 FDHLLWMLENSDPNITFDSNLEELAELY 148
           FDHLLWMLEN+DPN+  DS LEELA+LY
Sbjct: 121 FDHLLWMLENADPNLILDS-LEELADLY 126

[Close]

BLAST of CSPI04G21540 vs. TAIR10
Match: AT3G12955.1 (AT3G12955.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-23
Identity = 67/148 (45.27%), Postives = 96/148 (64.86%), Query Frame = 1


Query: 3   KINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNV-IL 62
           ++  +LR+CKS+S QLGRS SY+SLRSKS R D        +D  Q ++Q  + S    +
Sbjct: 6   RLMMMLRRCKSVSTQLGRSYSYTSLRSKSARRD-------PQDHLQDVDQSPTPSMYQTV 65

Query: 63  YVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDGHEDDEECIL-VRCEVVLF 122
            VG T+K Y I+ K+L HPLLNAL++K   ++  ++DD++DG      CI+ V+CEVVLF
Sbjct: 66  LVGRTKKPYLISKKHLKHPLLNALVEK---QQRYEEDDNEDG-----SCIITVKCEVVLF 125

Query: 123 DHLLWMLENSDPNITFDSNLEELAELYV 149
           DHLLWMLE  D  +    +L++ A LY+
Sbjct: 126 DHLLWMLEYGD-EVHILESLDDFAHLYL 137

[Close]

BLAST of CSPI04G21540 vs. TAIR10
Match: AT1G17345.1 (AT1G17345.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-13
Identity = 37/95 (38.95%), Postives = 59/95 (62.11%), Query Frame = 1


Query: 60  ILYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDGHEDDEECILVRCEVVL 119
           ++YVG +R+ Y ++S  ++HPL   L+D+S   + +++         D+E +LV CEVVL
Sbjct: 46  VVYVGKSRRPYMLSSHVIAHPLFQELLDRSS--RFIEE-------RHDQETVLVACEVVL 105

Query: 120 FDHLLWMLENS-----DPNITFDSNLEELAELYVF 150
           F+HLLWML+NS     D +     ++EELAE Y +
Sbjct: 106 FEHLLWMLKNSSSDHGDEDDRERGSVEELAEFYTY 131

[Close]

BLAST of CSPI04G21540 vs. TAIR10
Match: AT1G72430.1 (AT1G72430.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 70.9 bits (172), Expect = 7.8e-13
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 1


Query: 60  ILYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDGHEDDEECILVRCEVVL 119
           ++YVG TR+ Y +    +SHPL   L+D+S S+ +          E D E I+V CEVVL
Sbjct: 45  VVYVGQTRRPYMLRPDIISHPLFQELVDRSSSRSI----------EQDRE-IVVACEVVL 104

Query: 120 FDHLLWMLENSDPNITFDSNLEELAELYVF 150
           F+HLLWML++         ++EELAE Y +
Sbjct: 105 FEHLLWMLKSGQEG----GSVEELAEFYTY 119

[Close]

BLAST of CSPI04G21540 vs. TAIR10
Match: AT5G20820.1 (AT5G20820.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = 1


Query: 61  LYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDGHEDDEECILVRCEVVLF 120
           +YVG TR+ Y ++S  +SHPL   L               D G   ++  I V CEVVLF
Sbjct: 51  VYVGRTRRTYHVSSDVVSHPLFQQLAAV------------DGGCGSEDGSISVSCEVVLF 110

Query: 121 DHLLWMLENSDPNITFDSNLEELAELY 148
           +HLLWMLEN+D + +   ++ EL E Y
Sbjct: 111 EHLLWMLENADADESRPESVYELVEFY 125

[Close]

BLAST of CSPI04G21540 vs. NCBI nr
Match: gi|778695308|ref|XP_011653970.1| (PREDICTED: uncharacterized protein LOC105435277 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 2.0e-74
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60
           MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60

Query: 61  LYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLV-DDDDDDDGHEDDEECILVRCEVVL 120
           LYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLV DDDDDDDGHEDDEECILVRCEVVL
Sbjct: 61  LYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDDGHEDDEECILVRCEVVL 120

Query: 121 FDHLLWMLENSDPNITFDSNLEELAELYVF 150
           FDHLLWMLENSDPNITFDSNLEELAELYVF
Sbjct: 121 FDHLLWMLENSDPNITFDSNLEELAELYVF 150

[Close]

BLAST of CSPI04G21540 vs. NCBI nr
Match: gi|659087142|ref|XP_008444291.1| (PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo])

HSP 1 Score: 261.5 bits (667), Expect = 8.8e-67
Identity = 140/155 (90.32%), Postives = 144/155 (92.90%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSG-SNV 60
           MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQ +QKVSG +NV
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQFDQKVSGNNNV 60

Query: 61  ILYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDD-----DDGHEDDEECILVR 120
           +LYVGSTRKKYAINSKYL HPLLNALIDKSKSKKLVDD DD     DDG  DDE+CILVR
Sbjct: 61  VLYVGSTRKKYAINSKYLGHPLLNALIDKSKSKKLVDDHDDEHEEHDDG--DDEDCILVR 120

Query: 121 CEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF 150
           CEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF
Sbjct: 121 CEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF 153

[Close]

BLAST of CSPI04G21540 vs. NCBI nr
Match: gi|255544710|ref|XP_002513416.1| (PREDICTED: uncharacterized protein LOC8272635 [Ricinus communis])

HSP 1 Score: 169.9 bits (429), Expect = 3.5e-39
Identity = 95/149 (63.76%), Postives = 112/149 (75.17%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60
           MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTRE+LW   K+E++  Q            
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREELWGDHKEEDEEHQS----------T 60

Query: 61  LYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDGHEDDEECILVRCEVVLF 120
           L+VGSTRK+Y I+SKYLSHPL+NALI KSK ++              EE ++V+CEVVLF
Sbjct: 61  LFVGSTRKRYVISSKYLSHPLVNALIQKSKQRQ-------------GEEILVVKCEVVLF 120

Query: 121 DHLLWMLENSDPNITFDSNLEELAELYVF 150
           DHLLWMLEN+DPN++FDS LEELAELYVF
Sbjct: 121 DHLLWMLENADPNLSFDS-LEELAELYVF 125

[Close]

BLAST of CSPI04G21540 vs. NCBI nr
Match: gi|566195513|ref|XP_002317621.2| (auxin-responsive family protein [Populus trichocarpa])

HSP 1 Score: 163.7 bits (413), Expect = 2.5e-37
Identity = 91/149 (61.07%), Postives = 110/149 (73.83%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60
           MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW   KQE++  + I          
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREDLWGDHKQEDENHETI---------- 60

Query: 61  LYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDGHEDDEECILVRCEVVLF 120
            +VGSTRK+Y I+SKYLSHPL+NALI+KS+ K              ++  ++V+CEVV F
Sbjct: 61  -FVGSTRKRYVISSKYLSHPLVNALIEKSRQK------------PGEDNILVVKCEVVFF 120

Query: 121 DHLLWMLENSDPNITFDSNLEELAELYVF 150
           DHLLWMLEN+DPN +FDS LEELA+LY+F
Sbjct: 121 DHLLWMLENADPNASFDS-LEELADLYMF 125

[Close]

BLAST of CSPI04G21540 vs. NCBI nr
Match: gi|224056745|ref|XP_002299002.1| (auxin-responsive family protein [Populus trichocarpa])

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-35
Identity = 89/149 (59.73%), Postives = 110/149 (73.83%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60
           MKKI+ +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW       D +Q+ E     ++  
Sbjct: 1   MKKISLILRKCKSLSRQLGRSSSYSSLRSKSTREDLW----GHHDHKQEDE-----NHAT 60

Query: 61  LYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDGHEDDEECILVRCEVVLF 120
           ++VGSTRK+Y I+SKYLSHPL+NALI+KSK K              ++  ++VRCEVV F
Sbjct: 61  IFVGSTRKRYVISSKYLSHPLVNALIEKSKQK------------PGEDSILVVRCEVVFF 120

Query: 121 DHLLWMLENSDPNITFDSNLEELAELYVF 150
           DHLLWMLEN+DP++ F S LEELA+LY+F
Sbjct: 121 DHLLWMLENADPSVNFGS-LEELADLYMF 127

The following BLAST results are available for this feature:

BLAST of CSPI04G21540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G21540 vs. TrEMBL


Match Name	E-value	Identity	Description
B9RI47_RICCO	2.4e-39	63.76	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576420 PE=4 SV=1	[more]
B9I0J2_POPTR	1.7e-37	61.07	Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0011s14660g PE=4...	[more]
B9GK00_POPTR	1.2e-35	59.73	Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0001s46220g PE=4...	[more]
A0A067DWD4_CITSI	1.2e-35	62.16	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041846mg PE=4 SV=1	[more]
V4TRE9_9ROSI	1.2e-35	62.16	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023709mg PE=4 SV=1	[more]

BLAST of CSPI04G21540 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12955.1	1.7e-23	45.27	SAUR-like auxin-responsive protein family	[more]
AT1G17345.1	4.5e-13	38.95	SAUR-like auxin-responsive protein family	[more]
AT1G72430.1	7.8e-13	41.11	SAUR-like auxin-responsive protein family	[more]
AT5G20820.1	1.2e-10	40.23	SAUR-like auxin-responsive protein family	[more]

BLAST of CSPI04G21540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695308\|ref\|XP_011653970.1\|	2.0e-74	99.33	PREDICTED: uncharacterized protein LOC105435277 [Cucumis sativus]	[more]
gi\|659087142\|ref\|XP_008444291.1\|	8.8e-67	90.32	PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo]	[more]
gi\|255544710\|ref\|XP_002513416.1\|	3.5e-39	63.76	PREDICTED: uncharacterized protein LOC8272635 [Ricinus communis]	[more]
gi\|566195513\|ref\|XP_002317621.2\|	2.5e-37	61.07	auxin-responsive family protein [Populus trichocarpa]	[more]
gi\|224056745\|ref\|XP_002299002.1\|	1.8e-35	59.73	auxin-responsive family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G21540.1	CSPI04G21540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 28..127 score: 1.1
None	No IPR available	PANTHER	PTHR31374	FAMILY NOT NAMED	coord: 1..149 score: 5.5
None	No IPR available	PANTHER	PTHR31374:SF46	SUBFAMILY NOT NAMED	coord: 1..149 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G21540	Csa4G607030	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G21540	MELO3C010571	Melon (DHL92) v3.5.1	cpimeB317
CSPI04G21540	ClCG11G016410	Watermelon (Charleston Gray)	cpiwcgB289
CSPI04G21540	Lsi04G018770	Bottle gourd (USVL1VR-Ls)	cpilsiB283
CSPI04G21540	MELO3C010571.2	Melon (DHL92) v3.6.1	cpimedB309
CSPI04G21540	CsaV3_4G031860	Cucumber (Chinese Long) v3	cpicucB212
CSPI04G21540	Bhi09G003017	Wax gourd	cpiwgoB421
CSPI04G21540	Cucsa.058940	Cucumber (Gy14) v1	cgycpiB043
CSPI04G21540	CmaCh09G007380	Cucurbita maxima (Rimu)	cmacpiB024
CSPI04G21540	CmoCh09G007300	Cucurbita moschata (Rifu)	cmocpiB015
CSPI04G21540	CmoCh01G013600	Cucurbita moschata (Rifu)	cmocpiB459
CSPI04G21540	Cp4.1LG06g05830	Cucurbita pepo (Zucchini)	cpecpiB788
CSPI04G21540	Cp4.1LG02g02440	Cucurbita pepo (Zucchini)	cpecpiB574
CSPI04G21540	Carg14777	Silver-seed gourd	carcpiB0344
CSPI04G21540	Carg20054	Silver-seed gourd	carcpiB1082

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G21540	Watermelon (97103) v2	cpiwmbB286
CSPI04G21540	Cucurbita maxima (Rimu)	cmacpiB469
CSPI04G21540	Watermelon (97103) v1	cpiwmB356
CSPI04G21540	Cucumber (Gy14) v2	cgybcpiB169