Csa4G607030 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G607030
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	SAUR family protein
Location	Chr4 : 19298212 .. 19298664 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAAATAAATTCTCTATTGAGAAAATGCAAAAGCCTTTCAAGGCAATTGGGAAGATCTTCATCATACAGCAGCTTGAGATCAAAGTCCACAAGAGAAGATCTTTGGGTTTGTGAAAAACAAGAAGAAGACTTTGAGCAACAAATTGAGCAAAAGGTGAGTGGCAGTAATGTAATTTTATATGTTGGAAGTACAAGAAAGAAATATGCAATAAATTCAAAATATTTGAGCCATCCTTTGTTAAATGCTCTTATTGATAAATCCAAGTCTAAGAAATTAGTTGATGATGATGATGATGATGATGATGGACATGAAGATGATGAAGAATGTATTTTAGTGAGATGTGAAGTTGTTTTATTTGATCATCTTCTGTGGATGTTGGAAAATTCAGATCCAAATATTACTTTTGATTCTAATTTGGAGGAATTGGCTGAACTTTATGTTTTTTAG

mRNA sequence

ATGAAAAAAATAAATTCTCTATTGAGAAAATGCAAAAGCCTTTCAAGGCAATTGGGAAGATCTTCATCATACAGCAGCTTGAGATCAAAGTCCACAAGAGAAGATCTTTGGGTTTGTGAAAAACAAGAAGAAGACTTTGAGCAACAAATTGAGCAAAAGGTGAGTGGCAGTAATGTAATTTTATATGTTGGAATTGTTTTATTTGATCATCTTCTGTGGATGTTGGAAAATTCAGATCCAAATATTACTTTTGATTCTAATTTGGAGGAATTGGCTGAACTTTATGTTTTTTAG

Coding sequence (CDS)

ATGAAAAAAATAAATTCTCTATTGAGAAAATGCAAAAGCCTTTCAAGGCAATTGGGAAGATCTTCATCATACAGCAGCTTGAGATCAAAGTCCACAAGAGAAGATCTTTGGGTTTGTGAAAAACAAGAAGAAGACTTTGAGCAACAAATTGAGCAAAAGGTGAGTGGCAGTAATGTAATTTTATATGTTGGAATTGTTTTATTTGATCATCTTCTGTGGATGTTGGAAAATTCAGATCCAAATATTACTTTTGATTCTAATTTGGAGGAATTGGCTGAACTTTATGTTTTTTAG

Protein sequence

MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVILYVGIVLFDHLLWMLENSDPNITFDSNLEELAELYVF*

Homology

[Close]

BLAST of Csa4G607030 vs. TrEMBL
Match: A0A0A0L464_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G607030 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 6.0e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60
          MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI
Sbjct: 1  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60

Query: 61 LYVGIVLFDHLLWMLENSDPNITFDSNLEELAELYVF 98
          LYVGIVLFDHLLWMLENSDPNITFDSNLEELAELYVF
Sbjct: 61 LYVGIVLFDHLLWMLENSDPNITFDSNLEELAELYVF 97

[Close]

BLAST of Csa4G607030 vs. TrEMBL
Match: B9RI47_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576420 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-23
Identity = 66/126 (52.38%), Postives = 80/126 (63.49%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQI---------- 60
           MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTRE+LW   K+E++  Q            
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREELWGDHKEEDEEHQSTLFVGSTRKRY 60

Query: 61  -------------------EQKVSGSNVILYVGIVLFDHLLWMLENSDPNITFDSNLEEL 98
                              +Q+     +++   +VLFDHLLWMLEN+DPN++FDS LEEL
Sbjct: 61  VISSKYLSHPLVNALIQKSKQRQGEEILVVKCEVVLFDHLLWMLENADPNLSFDS-LEEL 120

[Close]

BLAST of Csa4G607030 vs. TrEMBL
Match: B9I0J2_POPTR (Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0011s14660g PE=4 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 66/126 (52.38%), Postives = 79/126 (62.70%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQI------EQKV 60
           MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW   KQE++  + I      ++ V
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREDLWGDHKQEDENHETIFVGSTRKRYV 60

Query: 61  SGSNVILY-----------------------VGIVLFDHLLWMLENSDPNITFDSNLEEL 98
             S  + +                         +V FDHLLWMLEN+DPN +FDS LEEL
Sbjct: 61  ISSKYLSHPLVNALIEKSRQKPGEDNILVVKCEVVFFDHLLWMLENADPNASFDS-LEEL 120

[Close]

BLAST of Csa4G607030 vs. TrEMBL
Match: V7AKJ2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G174700g PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.4e-21
Identity = 66/128 (51.56%), Postives = 77/128 (60.16%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFE------------- 60
           MKKIN LLRKCKSLSRQLGRSSSYSSLRSKST+ED+W     +ED               
Sbjct: 1   MKKINLLLRKCKSLSRQLGRSSSYSSLRSKSTKEDIWGGHGMQEDEHCETIFVGSTRKRY 60

Query: 61  ----------------QQIEQKVSGSNVILYVG--IVLFDHLLWMLENSDPNITFDSNLE 98
                            + + KVS  + +L V   +VLFDHLLWMLEN+DP  + +S LE
Sbjct: 61  VISKKYLNHPLLNELINKSKPKVSDESTVLVVNCEVVLFDHLLWMLENADPKFSSES-LE 120

[Close]

BLAST of Csa4G607030 vs. TrEMBL
Match: A0A151UFN6_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_048986 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.3e-20
Identity = 65/127 (51.18%), Postives = 75/127 (59.06%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQI---------- 60
           MKKIN LLRKCKSLS+QLGRSSSYSSLRSKS +ED+W     +ED   Q           
Sbjct: 1   MKKINLLLRKCKSLSKQLGRSSSYSSLRSKSAKEDIWGGHGTQEDEHCQTIFVGSTRKRY 60

Query: 61  -------------------EQKVSGSNVILY-VGIVLFDHLLWMLENSDPNITFDSNLEE 98
                               QK S  +V++    +VLFDHLLWMLEN+DP  + DS LEE
Sbjct: 61  VISKKYLNHPLLNALINKSNQKESDESVVMVNCEVVLFDHLLWMLENADPKFSSDS-LEE 120

[Close]

BLAST of Csa4G607030 vs. TAIR10
Match: AT3G12955.1 (AT3G12955.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 52.8 bits (125), Expect = 1.4e-07
Identity = 41/133 (30.83%), Postives = 60/133 (45.11%), Query Frame = 1


Query: 3   KINSLLRKCKSLSRQLGRSSSYSSLRSKS----------------------------TRE 62
           ++  +LR+CKS+S QLGRS SY+SLRSKS                            T++
Sbjct: 6   RLMMMLRRCKSVSTQLGRSYSYTSLRSKSARRDPQDHLQDVDQSPTPSMYQTVLVGRTKK 65

Query: 63  DLWVCEKQ----------EEDFEQQIEQKVSGSNVI-LYVGIVLFDHLLWMLENSDPNIT 97
              + +K           E+    + +    GS +I +   +VLFDHLLWMLE  D  + 
Sbjct: 66  PYLISKKHLKHPLLNALVEKQQRYEEDDNEDGSCIITVKCEVVLFDHLLWMLEYGD-EVH 125

[Close]

BLAST of Csa4G607030 vs. NCBI nr
Match: gi|700199768|gb|KGN54926.1| (hypothetical protein Csa_4G607030 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 8.6e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60
          MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI
Sbjct: 1  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60

Query: 61 LYVGIVLFDHLLWMLENSDPNITFDSNLEELAELYVF 98
          LYVGIVLFDHLLWMLENSDPNITFDSNLEELAELYVF
Sbjct: 61 LYVGIVLFDHLLWMLENSDPNITFDSNLEELAELYVF 97

[Close]

BLAST of Csa4G607030 vs. NCBI nr
Match: gi|778695308|ref|XP_011653970.1| (PREDICTED: uncharacterized protein LOC105435277 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 9.9e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60
          MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI
Sbjct: 1  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSGSNVI 60

Query: 61 LYVG 65
          LYVG
Sbjct: 61 LYVG 64

[Close]

BLAST of Csa4G607030 vs. NCBI nr
Match: gi|778695308|ref|XP_011653970.1| (PREDICTED: uncharacterized protein LOC105435277 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 59  VILYVGIVLFDHLLWMLENSDPNITFDSNLEELAELYVF 98
           +++   +VLFDHLLWMLENSDPNITFDSNLEELAELYVF
Sbjct: 112 ILVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF 150

HSP 2 Score: 119.0 bits (297), Expect = 4.6e-24
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 1  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIEQKVSG-SNV 60
          MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQ +QKVSG +NV
Sbjct: 1  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQFDQKVSGNNNV 60

Query: 61 ILYVG 65
          +LYVG
Sbjct: 61 VLYVG 65

[Close]

BLAST of Csa4G607030 vs. NCBI nr
Match: gi|659087142|ref|XP_008444291.1| (PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 9.0e-20
Identity = 70/153 (45.75%), Postives = 81/153 (52.94%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKS----------------------------- 60
           MKKINSLLRKCKSLSRQLGRSSSYSSLRSKS                             
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQFDQKVSGNNNV 60

Query: 61  ------TRE------------------DLWVCEKQEEDFEQQIEQKVSGSN---VILYVG 98
                 TR+                  D    +K  +D + + E+   G +   +++   
Sbjct: 61  VLYVGSTRKKYAINSKYLGHPLLNALIDKSKSKKLVDDHDDEHEEHDDGDDEDCILVRCE 120

HSP 2 Score: 115.5 bits (288), Expect = 5.1e-23
Identity = 66/126 (52.38%), Postives = 80/126 (63.49%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQI---------- 60
           MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTRE+LW   K+E++  Q            
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREELWGDHKEEDEEHQSTLFVGSTRKRY 60

Query: 61  -------------------EQKVSGSNVILYVGIVLFDHLLWMLENSDPNITFDSNLEEL 98
                              +Q+     +++   +VLFDHLLWMLEN+DPN++FDS LEEL
Sbjct: 61  VISSKYLSHPLVNALIQKSKQRQGEEILVVKCEVVLFDHLLWMLENADPNLSFDS-LEEL 120

[Close]

BLAST of Csa4G607030 vs. NCBI nr
Match: gi|566195513|ref|XP_002317621.2| (auxin-responsive family protein [Populus trichocarpa])

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 66/126 (52.38%), Postives = 79/126 (62.70%), Query Frame = 1


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQI------EQKV 60
           MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW   KQE++  + I      ++ V
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREDLWGDHKQEDENHETIFVGSTRKRYV 60

Query: 61  SGSNVILY-----------------------VGIVLFDHLLWMLENSDPNITFDSNLEEL 98
             S  + +                         +V FDHLLWMLEN+DPN +FDS LEEL
Sbjct: 61  ISSKYLSHPLVNALIEKSRQKPGEDNILVVKCEVVFFDHLLWMLENADPNASFDS-LEEL 120

The following BLAST results are available for this feature:

BLAST of Csa4G607030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L464_CUCSA	6.0e-47	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G607030 PE=4 SV=1	[more]
B9RI47_RICCO	3.5e-23	52.38	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576420 PE=4 SV=1	[more]
B9I0J2_POPTR	1.1e-21	52.38	Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0011s14660g PE=4...	[more]
V7AKJ2_PHAVU	7.4e-21	51.56	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G174700g PE=4 SV=1	[more]
A0A151UFN6_CAJCA	6.3e-20	51.18	Uncharacterized protein OS=Cajanus cajan GN=KK1_048986 PE=4 SV=1	[more]

BLAST of Csa4G607030 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12955.1	1.4e-07	30.83	SAUR-like auxin-responsive protein family	[more]

BLAST of Csa4G607030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199768\|gb\|KGN54926.1\|	8.6e-47	100.00	hypothetical protein Csa_4G607030 [Cucumis sativus]	[more]
gi\|778695308\|ref\|XP_011653970.1\|	9.9e-27	100.00	PREDICTED: uncharacterized protein LOC105435277 [Cucumis sativus]	[more]
gi\|778695308\|ref\|XP_011653970.1\|	1.1e-09	82.05	PREDICTED: uncharacterized protein LOC105435277 [Cucumis sativus]	[more]
gi\|659087142\|ref\|XP_008444291.1\|	9.0e-20	45.75	PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo]	[more]
gi\|566195513\|ref\|XP_002317621.2\|	1.6e-21	52.38	auxin-responsive family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G607030.1	Csa4G607030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31374	FAMILY NOT NAMED	coord: 1..97 score: 4.2
None	No IPR available	PANTHER	PTHR31374:SF46	SUBFAMILY NOT NAMED	coord: 1..97 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G607030	MELO3C010571	Melon (DHL92) v3.5.1	cumeB321
Csa4G607030	ClCG11G016410	Watermelon (Charleston Gray)	cuwcgB279
Csa4G607030	Lsi04G018770	Bottle gourd (USVL1VR-Ls)	culsiB283
Csa4G607030	MELO3C010571.2	Melon (DHL92) v3.6.1	cumedB307
Csa4G607030	Bhi09G003017	Wax gourd	cuwgoB419
Csa4G607030	CSPI04G21540	Wild cucumber (PI 183967)	cpicuB181
Csa4G607030	Cucsa.058940	Cucumber (Gy14) v1	cgycuB042
Csa4G607030	CmaCh09G007380	Cucurbita maxima (Rimu)	cmacuB025
Csa4G607030	CmoCh01G013600	Cucurbita moschata (Rifu)	cmocuB455
Csa4G607030	CmoCh09G007300	Cucurbita moschata (Rifu)	cmocuB016
Csa4G607030	Cp4.1LG02g02440	Cucurbita pepo (Zucchini)	cpecuB573
Csa4G607030	Cp4.1LG06g05830	Cucurbita pepo (Zucchini)	cpecuB786
Csa4G607030	Carg14777	Silver-seed gourd	carcuB0338
Csa4G607030	Carg20054	Silver-seed gourd	carcuB1060

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G607030	Watermelon (97103) v2	cuwmbB279
Csa4G607030	Cucurbita maxima (Rimu)	cmacuB467
Csa4G607030	Watermelon (97103) v1	cuwmB349
Csa4G607030	Cucumber (Gy14) v2	cgybcuB166