Carg20054 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20054
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Auxin responsive SAUR protein
Location	Cucurbita_argyrosperma_scaffold_126 : 182499 .. 182969 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAATGAATTCTCTGTTGAGGAAATGCAAGAGCCTTTCAAGGCAATTGGGGAGGTCCTCTTCATACAGCAGCTTGAGGTCAAAATCCACAAGGGAAGATCTATGGGTTTGTGAAAGAACGATGGAAGAACACGAAGAACACGAAGAACGCGAAGAACACGGAGAACACGAAGAACGTGAAGGGTTTGAAGAGGTGAGTGGCAGTAATGTAATTATCTATGTTGGGAGTACAAGGAAGCGATATACAATAAGTTCAAAGTATTTGAGCCATCCTTTGCTTAATGCTCTTATTGATAAATCAAAACCTCCCAAGGGCAATGAAGATGATGATGATGATCATAAGTGCATTTCGGTGAGATGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAGAATTCTGATCCGAATATTTGTTTTGATTCTAATTTGGAGGAATTGGCTGAACTTTATGTGTTTTGA

mRNA sequence

ATGATGAAAATGAATTCTCTGTTGAGGAAATGCAAGAGCCTTTCAAGGCAATTGGGGAGGTCCTCTTCATACAGCAGCTTGAGGTCAAAATCCACAAGGGAAGATCTATGGGTTTGTGAAAGAACGATGGAAGAACACGAAGAACACGAAGAACGCGAAGAACACGGAGAACACGAAGAACGTGAAGGGTTTGAAGAGGTGAGTGGCAGTAATGTAATTATCTATGTTGGGAGTACAAGGAAGCGATATACAATAAGTTCAAAGTATTTGAGCCATCCTTTGCTTAATGCTCTTATTGATAAATCAAAACCTCCCAAGGGCAATGAAGATGATGATGATGATCATAAGTGCATTTCGGTGAGATGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAGAATTCTGATCCGAATATTTGTTTTGATTCTAATTTGGAGGAATTGGCTGAACTTTATGTGTTTTGA

Coding sequence (CDS)

ATGATGAAAATGAATTCTCTGTTGAGGAAATGCAAGAGCCTTTCAAGGCAATTGGGGAGGTCCTCTTCATACAGCAGCTTGAGGTCAAAATCCACAAGGGAAGATCTATGGGTTTGTGAAAGAACGATGGAAGAACACGAAGAACACGAAGAACGCGAAGAACACGGAGAACACGAAGAACGTGAAGGGTTTGAAGAGGTGAGTGGCAGTAATGTAATTATCTATGTTGGGAGTACAAGGAAGCGATATACAATAAGTTCAAAGTATTTGAGCCATCCTTTGCTTAATGCTCTTATTGATAAATCAAAACCTCCCAAGGGCAATGAAGATGATGATGATGATCATAAGTGCATTTCGGTGAGATGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAGAATTCTGATCCGAATATTTGTTTTGATTCTAATTTGGAGGAATTGGCTGAACTTTATGTGTTTTGA

Protein sequence

MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEEREGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF

Homology

[Close]

BLAST of Carg20054 vs. NCBI nr
Match: XP_023536060.1 (auxin-responsive protein SAUR71 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.0 bits (567), Expect = 7.0e-55
Identity = 140/156 (89.74%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEXXXXXXXXXXXXXXX 60
           MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVC+RTMEE      XXXXXXXXX
Sbjct: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCDRTMEE---HEEXXXXXXXXX 60

Query: 61  XXXXXEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEXXXXXHKCISV 120
           XXXXX    SNVIIYVGSTRKRY ISSKYLSHPLLNALIDKSKPPKG  XXXXX +CISV
Sbjct: 61  XXXXXXXXXSNVIIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKG-XXXXXXXECISV 120

Query: 121 RCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 157
           RCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF
Sbjct: 121 RCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 152

[Close]

BLAST of Carg20054 vs. NCBI nr
Match: XP_011653970.1 (PREDICTED: uncharacterized protein LOC105435277 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 114/163 (69.94%), Postives = 121/163 (74.23%), Query Frame = 0


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEXXXXXXXXXXXXXXX 60
           M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCE+  E+               
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEED-------------FE 60

Query: 61  XXXXXEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSK-------PPKGNEXXXX 120
                +VSGSNVI+YVGSTRK+Y I+SKYLSHPLLNALIDKSK             XXXX
Sbjct: 61  QQIEQKVSGSNVILYVGSTRKKYAINSKYLSHPLLNALIDKSKXXXXXXXXXXXXXXXXX 120

Query: 121 XHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 157
           X   I VRCEVVLFDHLLWMLENSDPNI FDSNLEELAELYVF
Sbjct: 121 XXXXILVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF 150

[Close]

BLAST of Carg20054 vs. NCBI nr
Match: XP_008444291.1 (PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 5.0e-45
Identity = 113/166 (68.07%), Postives = 122/166 (73.49%), Query Frame = 0


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEXXXXXXXXXXXXXXX 60
           M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCE+  E+               
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEED-------------FE 60

Query: 61  XXXXXEVSG-SNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPK---------GNEX 120
                +VSG +NV++YVGSTRK+Y I+SKYL HPLLNALIDKSK  K            X
Sbjct: 61  QQFDQKVSGNNNVVLYVGSTRKKYAINSKYLGHPLLNALIDKSKSKKLVDDXXXXXXXXX 120

Query: 121 XXXXHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 157
           XXXX  CI VRCEVVLFDHLLWMLENSDPNI FDSNLEELAELYVF
Sbjct: 121 XXXXXXCILVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF 153

[Close]

BLAST of Carg20054 vs. NCBI nr
Match: XP_022135446.1 (uncharacterized protein LOC111007398 [Momordica charantia])

HSP 1 Score: 179.9 bits (455), Expect = 6.8e-42
Identity = 121/157 (77.07%), Postives = 130/157 (82.80%), Query Frame = 0


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW-VCERTMEEXXXXXXXXXXXXXX 60
           M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW +C   M      XXXXXXXXXX
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKM------XXXXXXXXXX 60

Query: 61  XXXXXXEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEXXXXXHKCIS 120
           XXXXX +V GSNVI+YVGSTRK+Y ISSK+LSHPL+NALIDK        XXX   + IS
Sbjct: 61  XXXXXEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKXXXXXXXXXXXC--EAIS 120

Query: 121 VRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 157
           VRCEVVLFDHLLWMLENSDPNI FDSNLEELA+LYVF
Sbjct: 121 VRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF 149

[Close]

BLAST of Carg20054 vs. NCBI nr
Match: XP_002513416.1 (auxin-responsive protein SAUR78 [Ricinus communis] >EEF48819.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 157.5 bits (397), Expect = 3.6e-35
Identity = 92/156 (58.97%), Postives = 105/156 (67.31%), Query Frame = 0


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEXXXXXXXXXXXXXXX 60
           M K+N +LRKCKSLSRQLGRSSSYSSLRSKSTRE+LW   +  +E               
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREELWGDHKEEDEE-------------- 60

Query: 61  XXXXXEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEXXXXXHKCISV 120
                        ++VGSTRKRY ISSKYLSHPL+NALI KSK  +G E        + V
Sbjct: 61  ---------HQSTLFVGSTRKRYVISSKYLSHPLVNALIQKSKQRQGEE-------ILVV 120

Query: 121 RCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 157
           +CEVVLFDHLLWMLEN+DPN+ FDS LEELAELYVF
Sbjct: 121 KCEVVLFDHLLWMLENADPNLSFDS-LEELAELYVF 125

[Close]

BLAST of Carg20054 vs. TAIR10
Match: AT3G12955.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 95.1 bits (235), Expect = 4.0e-20
Identity = 63/155 (40.65%), Postives = 86/155 (55.48%), Query Frame = 0


Query: 2   MKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEXXXXXXXXXXXXXXXX 61
           M++  +LR+CKS+S QLGRS SY+SLRSKS R D     + +++                
Sbjct: 5   MRLMMMLRRCKSVSTQLGRSYSYTSLRSKSARRDPQDHLQDVDQ---------------- 64

Query: 62  XXXXEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEXXXXXHKC-ISV 121
                       + VG T+K Y IS K+L HPLLNAL++K +  +  E       C I+V
Sbjct: 65  ---SPTPSMYQTVLVGRTKKPYLISKKHLKHPLLNALVEKQQ--RYEEDDNEDGSCIITV 124

Query: 122 RCEVVLFDHLLWMLENSDPNICFDSNLEELAELYV 156
           +CEVVLFDHLLWMLE  D     +S L++ A LY+
Sbjct: 125 KCEVVLFDHLLWMLEYGDEVHILES-LDDFAHLYL 137

[Close]

BLAST of Carg20054 vs. TAIR10
Match: AT1G17345.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 73  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEXXXXXH--KCISVRCEVVLFDHL 132
           ++YVG +R+ Y +SS  ++HPL   L+D+S     +      H  + + V CEVVLF+HL
Sbjct: 46  VVYVGKSRRPYMLSSHVIAHPLFQELLDRS-----SRFIEERHDQETVLVACEVVLFEHL 105

Query: 133 LWMLENS-----DPNICFDSNLEELAELYVF 157
           LWML+NS     D +     ++EELAE Y +
Sbjct: 106 LWMLKNSSSDHGDEDDRERGSVEELAEFYTY 131

[Close]

BLAST of Carg20054 vs. TAIR10
Match: AT1G72430.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-11
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 73  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEXXXXXHKCISVRCEVVLFDHLLW 132
           ++YVG TR+ Y +    +SHPL   L+D+S     +       + I V CEVVLF+HLLW
Sbjct: 45  VVYVGQTRRPYMLRPDIISHPLFQELVDRS-----SSRSIEQDREIVVACEVVLFEHLLW 104

Query: 133 MLENSDPNICFDSNLEELAELYVF 157
           ML++         ++EELAE Y +
Sbjct: 105 MLKSGQEG----GSVEELAEFYTY 119

[Close]

BLAST of Carg20054 vs. TAIR10
Match: AT5G20820.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-11
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 74  IYVGSTRKRYTISSKYLSHPLLN--ALIDKSKPPKGNEXXXXXHKCISVRCEVVLFDHLL 133
           +YVG TR+ Y +SS  +SHPL    A +D      G+E        ISV CEVVLF+HLL
Sbjct: 51  VYVGRTRRTYHVSSDVVSHPLFQQLAAVDGG---CGSEDG-----SISVSCEVVLFEHLL 110

Query: 134 WMLENSDPNICFDSNLEELAELY 155
           WMLEN+D +     ++ EL E Y
Sbjct: 111 WMLENADADESRPESVYELVEFY 125

[Close]

BLAST of Carg20054 vs. TAIR10
Match: AT5G20810.2 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 48.1 bits (113), Expect = 5.6e-06
Identity = 25/81 (30.86%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 66  EVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEXXXXXHKCISVRCEVV 125
           +V   N+ +YVG   +R+ I + YLSH L   L++K++     E        +++ CEV 
Sbjct: 78  DVPKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAE----EEFGFDQSGALTIPCEVE 137

Query: 126 LFDHLLWMLENSDPNICFDSN 147
            F +LL  +EN+  ++  D N
Sbjct: 138 TFKYLLKCMENNLKDLHPDDN 154

[Close]

BLAST of Carg20054 vs. Swiss-Prot
Match: sp|Q9LQI6|SAU77_ARATH (Auxin-responsive protein SAUR77 OS=Arabidopsis thaliana OX=3702 GN=SAUR77 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-10
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 73  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEXXXXXH--KCISVRCEVVLFDHL 132
           ++YVG +R+ Y +SS  ++HPL   L+D+S     +      H  + + V CEVVLF+HL
Sbjct: 46  VVYVGKSRRPYMLSSHVIAHPLFQELLDRS-----SRFIEERHDQETVLVACEVVLFEHL 105

Query: 133 LWMLENS-----DPNICFDSNLEELAELYVF 157
           LWML+NS     D +     ++EELAE Y +
Sbjct: 106 LWMLKNSSSDHGDEDDRERGSVEELAEFYTY 131

[Close]

BLAST of Carg20054 vs. Swiss-Prot
Match: sp|Q29PU2|SAU76_ARATH (Auxin-responsive protein SAUR76 OS=Arabidopsis thaliana OX=3702 GN=SAUR76 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.1e-10
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 74  IYVGSTRKRYTISSKYLSHPLLN--ALIDKSKPPKGNEXXXXXHKCISVRCEVVLFDHLL 133
           +YVG TR+ Y +SS  +SHPL    A +D      G+E        ISV CEVVLF+HLL
Sbjct: 51  VYVGRTRRTYHVSSDVVSHPLFQQLAAVDGG---CGSEDG-----SISVSCEVVLFEHLL 110

Query: 134 WMLENSDPNICFDSNLEELAELY 155
           WMLEN+D +     ++ EL E Y
Sbjct: 111 WMLENADADESRPESVYELVEFY 125

[Close]

BLAST of Carg20054 vs. Swiss-Prot
Match: sp|Q9C9E1|SAU78_ARATH (Auxin-responsive protein SAUR78 OS=Arabidopsis thaliana OX=3702 GN=SAUR78 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.1e-10
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 73  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEXXXXXHKCISVRCEVVLFDHLLW 132
           ++YVG TR+ Y +    +SHPL   L+D+S     +       + I V CEVVLF+HLLW
Sbjct: 45  VVYVGQTRRPYMLRPDIISHPLFQELVDRS-----SSRSIEQDREIVVACEVVLFEHLLW 104

Query: 133 MLENSDPNICFDSNLEELAELYVF 157
           ML++         ++EELAE Y +
Sbjct: 105 MLKSGQEG----GSVEELAEFYTY 119

[Close]

BLAST of Carg20054 vs. TrEMBL
Match: tr|A0A1S3B9J9|A0A1S3B9J9_CUCME (uncharacterized protein LOC103487659 OS=Cucumis melo OX=3656 GN=LOC103487659 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.3e-45
Identity = 113/166 (68.07%), Postives = 122/166 (73.49%), Query Frame = 0


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEXXXXXXXXXXXXXXX 60
           M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCE+  E+               
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEED-------------FE 60

Query: 61  XXXXXEVSG-SNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPK---------GNEX 120
                +VSG +NV++YVGSTRK+Y I+SKYL HPLLNALIDKSK  K            X
Sbjct: 61  QQFDQKVSGNNNVVLYVGSTRKKYAINSKYLGHPLLNALIDKSKSKKLVDDXXXXXXXXX 120

Query: 121 XXXXHKCISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 157
           XXXX  CI VRCEVVLFDHLLWMLENSDPNI FDSNLEELAELYVF
Sbjct: 121 XXXXXXCILVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF 153

[Close]

BLAST of Carg20054 vs. TrEMBL
Match: tr|B9RI47|B9RI47_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1576420 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.4e-35
Identity = 92/156 (58.97%), Postives = 105/156 (67.31%), Query Frame = 0


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEXXXXXXXXXXXXXXX 60
           M K+N +LRKCKSLSRQLGRSSSYSSLRSKSTRE+LW   +  +E               
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREELWGDHKEEDEE-------------- 60

Query: 61  XXXXXEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEXXXXXHKCISV 120
                        ++VGSTRKRY ISSKYLSHPL+NALI KSK  +G E        + V
Sbjct: 61  ---------HQSTLFVGSTRKRYVISSKYLSHPLVNALIQKSKQRQGEE-------ILVV 120

Query: 121 RCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 157
           +CEVVLFDHLLWMLEN+DPN+ FDS LEELAELYVF
Sbjct: 121 KCEVVLFDHLLWMLENADPNLSFDS-LEELAELYVF 125

[Close]

BLAST of Carg20054 vs. TrEMBL
Match: tr|A0A2K1YK99|A0A2K1YK99_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G143400v3 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.5e-34
Identity = 89/156 (57.05%), Postives = 104/156 (66.67%), Query Frame = 0


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEXXXXXXXXXXXXXXX 60
           M K+N +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW   +   E               
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREDLWGDHKQENE--------------- 60

Query: 61  XXXXXEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEXXXXXHKCISV 120
                    ++  I+VGSTRKRY ISSKYLSHPL+NALI+KS+   G +        + V
Sbjct: 61  ---------NHETIFVGSTRKRYVISSKYLSHPLVNALIEKSRQKPGED------NILVV 120

Query: 121 RCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 157
           +CEVV FDHLLWMLEN+DPN  FDS LEELA+LY+F
Sbjct: 121 KCEVVFFDHLLWMLENADPNASFDS-LEELADLYMF 125

[Close]

BLAST of Carg20054 vs. TrEMBL
Match: tr|A0A2C9UHW2|A0A2C9UHW2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G016100 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-33
Identity = 89/157 (56.69%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEXXXXXXXXXXXXXXX 60
           M K+N +LRKCKSLSRQLGRSSSYSSLRSKSTRED+W  ++  ++               
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREDVWGTDKLHQDE-------------- 60

Query: 61  XXXXXEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEXXXXXHKCISV 120
                     +  I+VGSTRKRY I+SKYLSHPL+NALI+KSK   G E        + V
Sbjct: 61  -------QEEHETIFVGSTRKRYVINSKYLSHPLVNALIEKSKQKHGEE-------VLVV 120

Query: 121 RCEVVLFDHLLWMLENSDP-NICFDSNLEELAELYVF 157
           +CEVVLFDHLLWMLEN+DP N+  DS LEELA+LYVF
Sbjct: 121 KCEVVLFDHLLWMLENADPTNLSLDS-LEELADLYVF 128

[Close]

BLAST of Carg20054 vs. TrEMBL
Match: tr|B9GK00|B9GK00_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G458000v3 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.8e-33
Identity = 88/156 (56.41%), Postives = 104/156 (66.67%), Query Frame = 0


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEXXXXXXXXXXXXXXX 60
           M K++ +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW      +E               
Sbjct: 1   MKKISLILRKCKSLSRQLGRSSSYSSLRSKSTREDLWGHHDHKQE--------------- 60

Query: 61  XXXXXEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEXXXXXHKCISV 120
                    ++  I+VGSTRKRY ISSKYLSHPL+NALI+KSK   G +        + V
Sbjct: 61  -------DENHATIFVGSTRKRYVISSKYLSHPLVNALIEKSKQKPGED------SILVV 120

Query: 121 RCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 157
           RCEVV FDHLLWMLEN+DP++ F S LEELA+LY+F
Sbjct: 121 RCEVVFFDHLLWMLENADPSVNFGS-LEELADLYMF 127

The following BLAST results are available for this feature:

BLAST of Carg20054 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536060.1	7.0e-55	89.74	auxin-responsive protein SAUR71 [Cucurbita pepo subsp. pepo]	[more]
XP_011653970.1	1.0e-45	69.94	PREDICTED: uncharacterized protein LOC105435277 [Cucumis sativus]	[more]
XP_008444291.1	5.0e-45	68.07	PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo]	[more]
XP_022135446.1	6.8e-42	77.07	uncharacterized protein LOC111007398 [Momordica charantia]	[more]
XP_002513416.1	3.6e-35	58.97	auxin-responsive protein SAUR78 [Ricinus communis] >EEF48819.1 conserved hypothe...	[more]

BLAST of Carg20054 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12955.1	4.0e-20	40.65	SAUR-like auxin-responsive protein family	[more]
AT1G17345.1	1.5e-11	39.56	SAUR-like auxin-responsive protein family	[more]
AT1G72430.1	3.4e-11	39.29	SAUR-like auxin-responsive protein family	[more]
AT5G20820.1	3.4e-11	45.78	SAUR-like auxin-responsive protein family	[more]
AT5G20810.2	5.6e-06	30.86	SAUR-like auxin-responsive protein family	[more]

BLAST of Carg20054 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LQI6\|SAU77_ARATH	2.7e-10	39.56	Auxin-responsive protein SAUR77 OS=Arabidopsis thaliana OX=3702 GN=SAUR77 PE=1 S...	[more]
sp\|Q29PU2\|SAU76_ARATH	6.1e-10	45.78	Auxin-responsive protein SAUR76 OS=Arabidopsis thaliana OX=3702 GN=SAUR76 PE=1 S...	[more]
sp\|Q9C9E1\|SAU78_ARATH	6.1e-10	39.29	Auxin-responsive protein SAUR78 OS=Arabidopsis thaliana OX=3702 GN=SAUR78 PE=1 S...	[more]

BLAST of Carg20054 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B9J9\|A0A1S3B9J9_CUCME	3.3e-45	68.07	uncharacterized protein LOC103487659 OS=Cucumis melo OX=3656 GN=LOC103487659 PE=...	[more]
tr\|B9RI47\|B9RI47_RICCO	2.4e-35	58.97	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1576420 PE=4 SV=1	[more]
tr\|A0A2K1YK99\|A0A2K1YK99_POPTR	3.5e-34	57.05	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G143400v3 PE=...	[more]
tr\|A0A2C9UHW2\|A0A2C9UHW2_MANES	2.2e-33	56.69	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G016100 PE=4 SV=...	[more]
tr\|B9GK00\|B9GK00_POPTR	3.8e-33	56.41	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G458000v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20054-RA	Carg20054-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 65..134 e-value: 1.4E-13 score: 50.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..66
None	No IPR available	PANTHER	PTHR31374	FAMILY NOT NAMED	coord: 1..156
None	No IPR available	PANTHER	PTHR31374:SF46	SUBFAMILY NOT NAMED	coord: 1..156

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20054	Csa4G607030	Cucumber (Chinese Long) v2	carcuB1060
Carg20054	MELO3C010571	Melon (DHL92) v3.5.1	carmeB1012
Carg20054	ClCG11G016410	Watermelon (Charleston Gray)	carwcgB1018
Carg20054	CSPI04G21540	Wild cucumber (PI 183967)	carcpiB1082
Carg20054	Cucsa.058940	Cucumber (Gy14) v1	carcgyB1160
Carg20054	CmaCh09G007380	Cucurbita maxima (Rimu)	carcmaB1445
Carg20054	CmoCh09G007300	Cucurbita moschata (Rifu)	carcmoB1399
Carg20054	CmoCh01G013600	Cucurbita moschata (Rifu)	carcmoB1401
Carg20054	Lsi04G018770	Bottle gourd (USVL1VR-Ls)	carlsiB954
Carg20054	Cp4.1LG06g05830	Cucurbita pepo (Zucchini)	carcpeB1455
Carg20054	Cp4.1LG02g02440	Cucurbita pepo (Zucchini)	carcpeB1453
Carg20054	MELO3C010571.2	Melon (DHL92) v3.6.1	carmedB1024
Carg20054	CsaV3_4G031860	Cucumber (Chinese Long) v3	carcucB1093
Carg20054	Bhi09G003017	Wax gourd	carwgoB1223

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20054	Carg14777	Silver-seed gourd	carcarB340

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20054	Watermelon (97103) v2	carwmbB1104
Carg20054	Cucumber (Gy14) v2	carcgybB1029
Carg20054	Cucurbita maxima (Rimu)	carcmaB1446
Carg20054	Cucurbita maxima (Rimu)	carcmaB1447
Carg20054	Cucurbita moschata (Rifu)	carcmoB1400
Carg20054	Cucurbita pepo (Zucchini)	carcpeB1454
Carg20054	Watermelon (97103) v1	carwmB1046