CmoCh09G007300 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G007300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SAUR-like auxin-responsive protein family
Location	Cmo_Chr09 : 3644591 .. 3645046 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAATGAATTCTCTGTTGAGGAAATGCAAGAGCCTTTCAAGGCAATTGGGGAGGTCCTCTTCATACAGCAGCTTGAGGTCAAAATCCACAAGGGAAGATCTATGGGTTTGTGAAAGAACGATGGAAGAACACGAAGAACACGAAGAACGCGAAGAACACGAAGAACGCGAAGGGTTTGAAAAGGTGAGTGGCAGTAATGTAATTATCTATGTTGGGAGTACAAGGAAGCGATATACAATAAGTTCAAAGTATTTGAGCCATCCTTTGCTTAATGCTCTTATTGATAAATCAAAACCTCCTAAGGGTAATGAAGAAGATGATGATGAGTGCATTTCGGTGAGATGTGAAGTTGTTCTGTTCGATCATCTCTTGTGGATGTTGGAGAATTCTGATCCGAATATTTGTTTTGATTCTAATTTGGAGGAATTGGCTGAGCTTTATGTGTTTTGA

mRNA sequence

ATGATGAAAATGAATTCTCTGTTGAGGAAATGCAAGAGCCTTTCAAGGCAATTGGGGAGGTCCTCTTCATACAGCAGCTTGAGGTCAAAATCCACAAGGGAAGATCTATGGGTTTGTGAAAGAACGATGGAAGAACACGAAGAACACGAAGAACGCGAAGAACACGAAGAACGCGAAGGGTTTGAAAAGGTGAGTGGCAGTAATGTAATTATCTATGTTGGGAGTACAAGGAAGCGATATACAATAAGTTCAAAGTATTTGAGCCATCCTTTGCTTAATGCTCTTATTGATAAATCAAAACCTCCTAAGGGTAATGAAGAAGATGATGATGAGTGCATTTCGGTGAGATGTGAAGTTGTTCTGTTCGATCATCTCTTGTGGATGTTGGAGAATTCTGATCCGAATATTTGTTTTGATTCTAATTTGGAGGAATTGGCTGAGCTTTATGTGTTTTGA

Coding sequence (CDS)

ATGATGAAAATGAATTCTCTGTTGAGGAAATGCAAGAGCCTTTCAAGGCAATTGGGGAGGTCCTCTTCATACAGCAGCTTGAGGTCAAAATCCACAAGGGAAGATCTATGGGTTTGTGAAAGAACGATGGAAGAACACGAAGAACACGAAGAACGCGAAGAACACGAAGAACGCGAAGGGTTTGAAAAGGTGAGTGGCAGTAATGTAATTATCTATGTTGGGAGTACAAGGAAGCGATATACAATAAGTTCAAAGTATTTGAGCCATCCTTTGCTTAATGCTCTTATTGATAAATCAAAACCTCCTAAGGGTAATGAAGAAGATGATGATGAGTGCATTTCGGTGAGATGTGAAGTTGTTCTGTTCGATCATCTCTTGTGGATGTTGGAGAATTCTGATCCGAATATTTGTTTTGATTCTAATTTGGAGGAATTGGCTGAGCTTTATGTGTTTTGA

Homology

[Close]

BLAST of CmoCh09G007300 vs. TrEMBL
Match: B9RI47_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576420 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.0e-37
Identity = 96/151 (63.58%), Postives = 110/151 (72.85%), Query Frame = 1


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHEEREG 60
           M K+N +LRKCKSLSRQLGRSSSYSSLRSKSTRE+LW         +  EE EEH+    
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREELW--------GDHKEEDEEHQS--- 60

Query: 61  FEKVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEEDDDECISVRCEVV 120
                     ++VGSTRKRY ISSKYLSHPL+NALI KSK  +G     +E + V+CEVV
Sbjct: 61  ---------TLFVGSTRKRYVISSKYLSHPLVNALIQKSKQRQG-----EEILVVKCEVV 120

Query: 121 LFDHLLWMLENSDPNICFDSNLEELAELYVF 152
           LFDHLLWMLEN+DPN+ FDS LEELAELYVF
Sbjct: 121 LFDHLLWMLENADPNLSFDS-LEELAELYVF 125

[Close]

BLAST of CmoCh09G007300 vs. TrEMBL
Match: B9I0J2_POPTR (Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0011s14660g PE=4 SV=2)

HSP 1 Score: 159.1 bits (401), Expect = 4.3e-36
Identity = 92/151 (60.93%), Postives = 109/151 (72.19%), Query Frame = 1


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHEEREG 60
           M K+N +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW          +H++ +E+ E   
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREDLW---------GDHKQEDENHE--- 60

Query: 61  FEKVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEEDDDECISVRCEVV 120
                     I+VGSTRKRY ISSKYLSHPL+NALI+KS+   G    +D  + V+CEVV
Sbjct: 61  ---------TIFVGSTRKRYVISSKYLSHPLVNALIEKSRQKPG----EDNILVVKCEVV 120

Query: 121 LFDHLLWMLENSDPNICFDSNLEELAELYVF 152
            FDHLLWMLEN+DPN  FDS LEELA+LY+F
Sbjct: 121 FFDHLLWMLENADPNASFDS-LEELADLYMF 125

[Close]

BLAST of CmoCh09G007300 vs. TrEMBL
Match: B9GK00_POPTR (Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0001s46220g PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.6e-36
Identity = 91/151 (60.26%), Postives = 110/151 (72.85%), Query Frame = 1


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHEEREG 60
           M K++ +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW        H +H++ +E      
Sbjct: 1   MKKISLILRKCKSLSRQLGRSSSYSSLRSKSTREDLW-------GHHDHKQEDE------ 60

Query: 61  FEKVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEEDDDECISVRCEVV 120
                 ++  I+VGSTRKRY ISSKYLSHPL+NALI+KSK   G    +D  + VRCEVV
Sbjct: 61  ------NHATIFVGSTRKRYVISSKYLSHPLVNALIEKSKQKPG----EDSILVVRCEVV 120

Query: 121 LFDHLLWMLENSDPNICFDSNLEELAELYVF 152
            FDHLLWMLEN+DP++ F S LEELA+LY+F
Sbjct: 121 FFDHLLWMLENADPSVNFGS-LEELADLYMF 127

[Close]

BLAST of CmoCh09G007300 vs. TrEMBL
Match: C6T0R1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G236300 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.2e-35
Identity = 92/151 (60.93%), Postives = 104/151 (68.87%), Query Frame = 1


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHEEREG 60
           M K+N LLRKCKSLSRQLGRSSSYSSLRSKST+ED+W     M+E E  E          
Sbjct: 1   MKKINLLLRKCKSLSRQLGRSSSYSSLRSKSTKEDIWGGRHGMQEDENCE---------- 60

Query: 61  FEKVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEEDDDECISVRCEVV 120
                     I+VGSTRKRY IS KYL+HPLLNALI+KSK  K  + D+   + V CEVV
Sbjct: 61  ---------TIFVGSTRKRYIISKKYLNHPLLNALINKSKQIK-KDSDESSVLVVNCEVV 120

Query: 121 LFDHLLWMLENSDPNICFDSNLEELAELYVF 152
           LFDHLLWMLEN+DP    +S LEELAELYVF
Sbjct: 121 LFDHLLWMLENADPKFSSES-LEELAELYVF 130

[Close]

BLAST of CmoCh09G007300 vs. TrEMBL
Match: A0A0B2NTP7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_022266 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 92/151 (60.93%), Postives = 104/151 (68.87%), Query Frame = 1


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHEEREG 60
           M K+N LLRKCKSLSRQLGRSSSYSSLRSKST+ED+W     M+E E  E          
Sbjct: 1   MKKINLLLRKCKSLSRQLGRSSSYSSLRSKSTKEDIWGGGHGMQEDENCE---------- 60

Query: 61  FEKVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEEDDDECISVRCEVV 120
                     I+VGSTRKRY IS KYL+HPLLNALI+KSK  K  + D+   + V CEVV
Sbjct: 61  ---------TIFVGSTRKRYIISKKYLNHPLLNALINKSKQIK-KDSDESSVLVVNCEVV 120

Query: 121 LFDHLLWMLENSDPNICFDSNLEELAELYVF 152
           LFDHLLWMLEN+DP    +S LEELAELYVF
Sbjct: 121 LFDHLLWMLENADPKFSSES-LEELAELYVF 130

[Close]

BLAST of CmoCh09G007300 vs. TAIR10
Match: AT3G12955.1 (AT3G12955.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 104.4 bits (259), Expect = 6.4e-23
Identity = 64/150 (42.67%), Postives = 89/150 (59.33%), Query Frame = 1


Query: 2   MKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHEEREGF 61
           M++  +LR+CKS+S QLGRS SY+SLRSKS R D                 ++H +    
Sbjct: 5   MRLMMMLRRCKSVSTQLGRSYSYTSLRSKSARRD----------------PQDHLQDVDQ 64

Query: 62  EKVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEEDDDEC-ISVRCEVV 121
                    + VG T+K Y IS K+L HPLLNAL++K +  + ++ +D  C I+V+CEVV
Sbjct: 65  SPTPSMYQTVLVGRTKKPYLISKKHLKHPLLNALVEKQQRYEEDDNEDGSCIITVKCEVV 124

Query: 122 LFDHLLWMLENSDPNICFDSNLEELAELYV 151
           LFDHLLWMLE  D     +S L++ A LY+
Sbjct: 125 LFDHLLWMLEYGDEVHILES-LDDFAHLYL 137

[Close]

BLAST of CmoCh09G007300 vs. TAIR10
Match: AT1G17345.1 (AT1G17345.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 73.9 bits (180), Expect = 9.2e-14
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 1


Query: 70  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEEDDDECISVRCEVVLFDHLLWML 129
           ++YVG +R+ Y +SS  ++HPL   L+D+S      E  D E + V CEVVLF+HLLWML
Sbjct: 46  VVYVGKSRRPYMLSSHVIAHPLFQELLDRSSRFI-EERHDQETVLVACEVVLFEHLLWML 105

Query: 130 ENS-----DPNICFDSNLEELAELYVF 152
           +NS     D +     ++EELAE Y +
Sbjct: 106 KNSSSDHGDEDDRERGSVEELAEFYTY 131

[Close]

BLAST of CmoCh09G007300 vs. TAIR10
Match: AT5G20820.1 (AT5G20820.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-13
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 71  IYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEEDDDECISVRCEVVLFDHLLWMLE 130
           +YVG TR+ Y +SS  +SHPL   L        G    +D  ISV CEVVLF+HLLWMLE
Sbjct: 51  VYVGRTRRTYHVSSDVVSHPLFQQLAAVD----GGCGSEDGSISVSCEVVLFEHLLWMLE 110

Query: 131 NSDPNICFDSNLEELAELY 150
           N+D +     ++ EL E Y
Sbjct: 111 NADADESRPESVYELVEFY 125

[Close]

BLAST of CmoCh09G007300 vs. TAIR10
Match: AT1G72430.1 (AT1G72430.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-12
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 1


Query: 70  IIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEEDDDECISVRCEVVLFDHLLWML 129
           ++YVG TR+ Y +    +SHPL   L+D+S        + D  I V CEVVLF+HLLWML
Sbjct: 45  VVYVGQTRRPYMLRPDIISHPLFQELVDRSS---SRSIEQDREIVVACEVVLFEHLLWML 104

Query: 130 ENSDPNICFDSNLEELAELYVF 152
           ++         ++EELAE Y +
Sbjct: 105 KSGQEG----GSVEELAEFYTY 119

[Close]

BLAST of CmoCh09G007300 vs. NCBI nr
Match: gi|778695308|ref|XP_011653970.1| (PREDICTED: uncharacterized protein LOC105435277 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 7.3e-53
Identity = 118/160 (73.75%), Postives = 127/160 (79.38%), Query Frame = 1


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHEEREG 60
           M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCE+  E+ E+  E         
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEKQEEDFEQQIE--------- 60

Query: 61  FEKVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPK---------GNEEDDDE 120
            +KVSGSNVI+YVGSTRK+Y I+SKYLSHPLLNALIDKSK  K            EDD+E
Sbjct: 61  -QKVSGSNVILYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDDGHEDDEE 120

Query: 121 CISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 152
           CI VRCEVVLFDHLLWMLENSDPNI FDSNLEELAELYVF
Sbjct: 121 CILVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF 150

[Close]

BLAST of CmoCh09G007300 vs. NCBI nr
Match: gi|659087142|ref|XP_008444291.1| (PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo])

HSP 1 Score: 203.8 bits (517), Expect = 2.2e-49
Identity = 113/163 (69.33%), Postives = 128/163 (78.53%), Query Frame = 1


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHEEREG 60
           M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCE+          +EE  E++ 
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEK----------QEEDFEQQF 60

Query: 61  FEKVSG-SNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPK-----------GNEED 120
            +KVSG +NV++YVGSTRK+Y I+SKYL HPLLNALIDKSK  K            ++ D
Sbjct: 61  DQKVSGNNNVVLYVGSTRKKYAINSKYLGHPLLNALIDKSKSKKLVDDHDDEHEEHDDGD 120

Query: 121 DDECISVRCEVVLFDHLLWMLENSDPNICFDSNLEELAELYVF 152
           D++CI VRCEVVLFDHLLWMLENSDPNI FDSNLEELAELYVF
Sbjct: 121 DEDCILVRCEVVLFDHLLWMLENSDPNITFDSNLEELAELYVF 153

[Close]

BLAST of CmoCh09G007300 vs. NCBI nr
Match: gi|255544710|ref|XP_002513416.1| (PREDICTED: uncharacterized protein LOC8272635 [Ricinus communis])

HSP 1 Score: 162.9 bits (411), Expect = 4.3e-37
Identity = 96/151 (63.58%), Postives = 110/151 (72.85%), Query Frame = 1


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHEEREG 60
           M K+N +LRKCKSLSRQLGRSSSYSSLRSKSTRE+LW         +  EE EEH+    
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREELW--------GDHKEEDEEHQS--- 60

Query: 61  FEKVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEEDDDECISVRCEVV 120
                     ++VGSTRKRY ISSKYLSHPL+NALI KSK  +G     +E + V+CEVV
Sbjct: 61  ---------TLFVGSTRKRYVISSKYLSHPLVNALIQKSKQRQG-----EEILVVKCEVV 120

Query: 121 LFDHLLWMLENSDPNICFDSNLEELAELYVF 152
           LFDHLLWMLEN+DPN+ FDS LEELAELYVF
Sbjct: 121 LFDHLLWMLENADPNLSFDS-LEELAELYVF 125

[Close]

BLAST of CmoCh09G007300 vs. NCBI nr
Match: gi|566195513|ref|XP_002317621.2| (auxin-responsive family protein [Populus trichocarpa])

HSP 1 Score: 159.1 bits (401), Expect = 6.2e-36
Identity = 92/151 (60.93%), Postives = 109/151 (72.19%), Query Frame = 1


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHEEREG 60
           M K+N +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW          +H++ +E+ E   
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREDLW---------GDHKQEDENHE--- 60

Query: 61  FEKVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEEDDDECISVRCEVV 120
                     I+VGSTRKRY ISSKYLSHPL+NALI+KS+   G    +D  + V+CEVV
Sbjct: 61  ---------TIFVGSTRKRYVISSKYLSHPLVNALIEKSRQKPG----EDNILVVKCEVV 120

Query: 121 LFDHLLWMLENSDPNICFDSNLEELAELYVF 152
            FDHLLWMLEN+DPN  FDS LEELA+LY+F
Sbjct: 121 FFDHLLWMLENADPNASFDS-LEELADLYMF 125

[Close]

BLAST of CmoCh09G007300 vs. NCBI nr
Match: gi|224056745|ref|XP_002299002.1| (auxin-responsive family protein [Populus trichocarpa])

HSP 1 Score: 157.9 bits (398), Expect = 1.4e-35
Identity = 91/151 (60.26%), Postives = 110/151 (72.85%), Query Frame = 1


Query: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHEEREG 60
           M K++ +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW        H +H++ +E      
Sbjct: 1   MKKISLILRKCKSLSRQLGRSSSYSSLRSKSTREDLW-------GHHDHKQEDE------ 60

Query: 61  FEKVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEEDDDECISVRCEVV 120
                 ++  I+VGSTRKRY ISSKYLSHPL+NALI+KSK   G    +D  + VRCEVV
Sbjct: 61  ------NHATIFVGSTRKRYVISSKYLSHPLVNALIEKSKQKPG----EDSILVVRCEVV 120

Query: 121 LFDHLLWMLENSDPNICFDSNLEELAELYVF 152
            FDHLLWMLEN+DP++ F S LEELA+LY+F
Sbjct: 121 FFDHLLWMLENADPSVNFGS-LEELADLYMF 127

The following BLAST results are available for this feature:

BLAST of CmoCh09G007300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G007300 vs. TrEMBL


Match Name	E-value	Identity	Description
B9RI47_RICCO	3.0e-37	63.58	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576420 PE=4 SV=1	[more]
B9I0J2_POPTR	4.3e-36	60.93	Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0011s14660g PE=4...	[more]
B9GK00_POPTR	9.6e-36	60.26	Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0001s46220g PE=4...	[more]
C6T0R1_SOYBN	6.2e-35	60.93	Uncharacterized protein OS=Glycine max GN=GLYMA_08G236300 PE=2 SV=1	[more]
A0A0B2NTP7_GLYSO	1.1e-34	60.93	Uncharacterized protein OS=Glycine soja GN=glysoja_022266 PE=4 SV=1	[more]

BLAST of CmoCh09G007300 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12955.1	6.4e-23	42.67	SAUR-like auxin-responsive protein family	[more]
AT1G17345.1	9.2e-14	43.68	SAUR-like auxin-responsive protein family	[more]
AT5G20820.1	4.6e-13	46.84	SAUR-like auxin-responsive protein family	[more]
AT1G72430.1	1.0e-12	41.46	SAUR-like auxin-responsive protein family	[more]

BLAST of CmoCh09G007300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695308\|ref\|XP_011653970.1\|	7.3e-53	73.75	PREDICTED: uncharacterized protein LOC105435277 [Cucumis sativus]	[more]
gi\|659087142\|ref\|XP_008444291.1\|	2.2e-49	69.33	PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo]	[more]
gi\|255544710\|ref\|XP_002513416.1\|	4.3e-37	63.58	PREDICTED: uncharacterized protein LOC8272635 [Ricinus communis]	[more]
gi\|566195513\|ref\|XP_002317621.2\|	6.2e-36	60.93	auxin-responsive family protein [Populus trichocarpa]	[more]
gi\|224056745\|ref\|XP_002299002.1\|	1.4e-35	60.26	auxin-responsive family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G007300.1	CmoCh09G007300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 59..129 score: 1.7
None	No IPR available	unknown	Coil	Coil	coord: 39..59 scor
None	No IPR available	PANTHER	PTHR31374	FAMILY NOT NAMED	coord: 1..151 score: 1.7
None	No IPR available	PANTHER	PTHR31374:SF46	SUBFAMILY NOT NAMED	coord: 1..151 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G007300	Cucsa.058940	Cucumber (Gy14) v1	cgycmoB0071
CmoCh09G007300	CmaCh09G007380	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G007300	Csa4G607030	Cucumber (Chinese Long) v2	cmocuB016
CmoCh09G007300	MELO3C010571	Melon (DHL92) v3.5.1	cmomeB025
CmoCh09G007300	ClCG11G016410	Watermelon (Charleston Gray)	cmowcgB009
CmoCh09G007300	CSPI04G21540	Wild cucumber (PI 183967)	cmocpiB015
CmoCh09G007300	Lsi04G018770	Bottle gourd (USVL1VR-Ls)	cmolsiB013
CmoCh09G007300	Cp4.1LG06g05830	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G007300	Cp4.1LG02g02440	Cucurbita pepo (Zucchini)	cmocpeB023
CmoCh09G007300	MELO3C010571.2	Melon (DHL92) v3.6.1	cmomedB025
CmoCh09G007300	CsaV3_4G031860	Cucumber (Chinese Long) v3	cmocucB0019
CmoCh09G007300	Bhi09G003017	Wax gourd	cmowgoB0022
CmoCh09G007300	Carg14777	Silver-seed gourd	carcmoB0429
CmoCh09G007300	Carg20054	Silver-seed gourd	carcmoB1399

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh09G007300	CmoCh01G013600	Cucurbita moschata (Rifu)	cmocmoB022

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G007300	Watermelon (97103) v2	cmowmbB009
CmoCh09G007300	Cucurbita moschata (Rifu)	cmocmoB013
CmoCh09G007300	Cucurbita maxima (Rimu)	cmacmoB432
CmoCh09G007300	Cucurbita maxima (Rimu)	cmacmoB439
CmoCh09G007300	Watermelon (97103) v1	cmowmB030
CmoCh09G007300	Cucumber (Gy14) v2	cgybcmoB437