ClCG03G002040 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G002040
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 2223911 .. 2224159 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATTTCAAGCCTACCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGCCTTGTCAACTCCGCAGCTTTGGCGGCCTTCATGGCCCAAGAATTACTCTGCAGACTCATCCGAGACCTCGTCACCGGCGCCAGAACCGACGCCGTTTCGCCGCCTTCTCCGCCGCCGCCGCCTCCTCTTATTTCTCATGGAGGCTCCCTCGTCACGTGA

mRNA sequence

ATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATTTCAAGCCTACCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGCCTTGTCAACTCCGCAGCTTTGGCGGCCTTCATGGCCCAAGAATTACTCTGCAGACTCATCCGAGACCTCGTCACCGGCGCCAGAACCGACGCCGTTTCGCCGCCTTCTCCGCCGCCGCCGCCTCCTCTTATTTCTCATGGAGGCTCCCTCGTCACGTGA

Coding sequence (CDS)

ATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATTTCAAGCCTACCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGCCTTGTCAACTCCGCAGCTTTGGCGGCCTTCATGGCCCAAGAATTACTCTGCAGACTCATCCGAGACCTCGTCACCGGCGCCAGAACCGACGCCGTTTCGCCGCCTTCTCCGCCGCCGCCGCCTCCTCTTATTTCTCATGGAGGCTCCCTCGTCACGTGA

Protein sequence

MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTDAVSPPSPPPPPPLISHGGSLVT
Homology
[Close]
BLAST of ClCG03G002040 vs. TrEMBL
Match: A0A0A0LS06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.8e-24
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 1 

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTD 60
          MAAASST  KGKI +LPPKRGRIKAQI ESLVNSAALA FMA+E+LCR IRDLVT ART 
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 AVSPPSPPPPPPLISHGGS 80
             PP P PPPPLI HG S
Sbjct: 61 DAPPPYPAPPPPLIFHGVS 79

[Close]
BLAST of ClCG03G002040 vs. NCBI nr
Match: gi|700209619|gb|KGN64715.1| (hypothetical protein Csa_1G077160 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 1 

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTD 60
          MAAASST  KGKI +LPPKRGRIKAQI ESLVNSAALA FMA+E+LCR IRDLVT ART 
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 AVSPPSPPPPPPLISHGGS 80
             PP P PPPPLI HG S
Sbjct: 61 DAPPPYPAPPPPLIFHGVS 79

The following BLAST results are available for this feature:
BLAST of ClCG03G002040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS06_CUCSA7.8e-2477.22Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077160 PE=4 SV=1[more]
BLAST of ClCG03G002040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209619|gb|KGN64715.1|1.1e-2377.22hypothetical protein Csa_1G077160 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G002040.1ClCG03G002040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G002040Csa1G077160Cucumber (Chinese Long) v2cuwcgB037
ClCG03G002040Cla008294Watermelon (97103) v1wcgwmB223
ClCG03G002040Cla97C03G053040Watermelon (97103) v2wcgwmbB186
ClCG03G002040Bhi08G000295Wax gourdwcgwgoB348
ClCG03G002040CSPI01G12490Wild cucumber (PI 183967)cpiwcgB040
ClCG03G002040CmoCh13G001680Cucurbita moschata (Rifu)cmowcgB184
ClCG03G002040Cp4.1LG20g08920Cucurbita pepo (Zucchini)cpewcgB467
ClCG03G002040CsGy1G021920Cucumber (Gy14) v2cgybwcgB044
ClCG03G002040MELO3C026843.2Melon (DHL92) v3.6.1medwcgB141
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G002040Cucurbita moschata (Rifu)cmowcgB403
ClCG03G002040Cucurbita moschata (Rifu)cmowcgB500
ClCG03G002040Cucurbita moschata (Rifu)cmowcgB554
ClCG03G002040Wild cucumber (PI 183967)cpiwcgB487
ClCG03G002040Cucumber (Chinese Long) v2cuwcgB463
ClCG03G002040Melon (DHL92) v3.5.1mewcgB116
ClCG03G002040Melon (DHL92) v3.5.1mewcgB149
ClCG03G002040Watermelon (97103) v1wcgwmB244
ClCG03G002040Cucurbita pepo (Zucchini)cpewcgB275
ClCG03G002040Cucurbita pepo (Zucchini)cpewcgB500
ClCG03G002040Cucurbita pepo (Zucchini)cpewcgB671
ClCG03G002040Bottle gourd (USVL1VR-Ls)lsiwcgB063
ClCG03G002040Bottle gourd (USVL1VR-Ls)lsiwcgB185
ClCG03G002040Cucumber (Gy14) v2cgybwcgB425
ClCG03G002040Melon (DHL92) v3.6.1medwcgB110
ClCG03G002040Silver-seed gourdcarwcgB0436
ClCG03G002040Silver-seed gourdcarwcgB0704
ClCG03G002040Cucumber (Chinese Long) v3cucwcgB484
ClCG03G002040Watermelon (97103) v2wcgwmbB180
ClCG03G002040Watermelon (97103) v2wcgwmbB182
ClCG03G002040Wax gourdwcgwgoB330
ClCG03G002040Watermelon (Charleston Gray)wcgwcgB121
ClCG03G002040Watermelon (Charleston Gray)wcgwcgB124
ClCG03G002040Cucurbita maxima (Rimu)cmawcgB194
ClCG03G002040Cucurbita maxima (Rimu)cmawcgB404
ClCG03G002040Cucurbita maxima (Rimu)cmawcgB502
ClCG03G002040Cucurbita maxima (Rimu)cmawcgB504