CSPI01G12490 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G12490
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 7943246 .. 7943536 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTCTCTCGAGCTCTTCTCTTTTTTCTTCTTCTTCTTCTTCCGCCATGGCAGCAGCATCTTCAACAGCTTCAAAGGGGAAGATCTTTACCCTTCCACCAAAACGCGGTCGTATCAAAGCTCATATTCTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACCCATCCGAGACCTCGTCACCAGCGCTAGAACCGTCGATGCTCCTCCGCCTTATCCCGCACCACCGCCACCTCTTATTTTTCATGGAGTCTCCTTTTAA

mRNA sequence

ATGGCAGCAGCATCTTCAACAGCTTCAAAGGGGAAGATCTTTACCCTTCCACCAAAACGCGGTCGTATCAAAGCTCATATTCTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACCCATCCGAGACCTCGTCACCAGCGCTAGAACCGTCGATGCTCCTCCGCCTTATCCCGCACCACCGCCACCTCTTATTTTTCATGGAGTCTCCTTTTAA

Coding sequence (CDS)

ATGGCAGCAGCATCTTCAACAGCTTCAAAGGGGAAGATCTTTACCCTTCCACCAAAACGCGGTCGTATCAAAGCTCATATTCTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACCCATCCGAGACCTCGTCACCAGCGCTAGAACCGTCGATGCTCCTCCGCCTTATCCCGCACCACCGCCACCTCTTATTTTTCATGGAGTCTCCTTTTAA

Homology

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BLAST of CSPI01G12490 vs. TrEMBL
Match: A0A0A0LS06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-34
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 1


Query: 1  MAAASSTASKGKIFTLPPKRGRIKAHILESLVNSAALAAFMAEEILCRPIRDLVTSARTV 60
          MAAASSTASKGKIFTLPPKRGRIKA ILESLVNSAALA FMAEEILCRPIRDLVTSARTV
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 DAPPPYPAPPPPLIFHGVSF 81
          DAPPPYPAPPPPLIFHGVSF
Sbjct: 61 DAPPPYPAPPPPLIFHGVSF 80

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BLAST of CSPI01G12490 vs. NCBI nr
Match: gi|700209619|gb|KGN64715.1| (hypothetical protein Csa_1G077160 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-34
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 1


Query: 1  MAAASSTASKGKIFTLPPKRGRIKAHILESLVNSAALAAFMAEEILCRPIRDLVTSARTV 60
          MAAASSTASKGKIFTLPPKRGRIKA ILESLVNSAALA FMAEEILCRPIRDLVTSARTV
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 DAPPPYPAPPPPLIFHGVSF 81
          DAPPPYPAPPPPLIFHGVSF
Sbjct: 61 DAPPPYPAPPPPLIFHGVSF 80

The following BLAST results are available for this feature:

BLAST of CSPI01G12490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G12490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS06_CUCSA	1.3e-34	97.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077160 PE=4 SV=1	[more]

BLAST of CSPI01G12490 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G12490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209619\|gb\|KGN64715.1\|	1.8e-34	97.50	hypothetical protein Csa_1G077160 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G12490.1	CSPI01G12490.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G12490	Cla008294	Watermelon (97103) v1	cpiwmB012
CSPI01G12490	Csa1G077160	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G12490	ClCG03G002040	Watermelon (Charleston Gray)	cpiwcgB040
CSPI01G12490	MELO3C026843.2	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G12490	Cla97C03G053040	Watermelon (97103) v2	cpiwmbB034
CSPI01G12490	Bhi08G000295	Wax gourd	cpiwgoB042

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G12490	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G12490	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G12490	Cucumber (Gy14) v1	cgycpiB172