Bhi08G000295 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000295
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr8 : 12277391 .. 12278304 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATATATAAAATTAGGTTAAACCTAAATAATTTGTTGGTATCACTATTCAATACAAGAAGTCCCAAATTTTGTCATTGCCCTATAAATCACCACATCTTTGGAGTTCTCATTTCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTCTTCTCTTCTTTTCTTCTTCTGCCATGGCAGCAGATTCCTCCACAGGCTTAAAGGGGAAGATCTCTAGCCTTCCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGTCTTTTCAATTCCGCAGCTTTGGCAGCTTTCATGGCCGAAGAAATTCTCTGCAGACTCATCCGAGACCTCGTCAGTGCCGCCAGAACCGACGCCGTTCTGCCGCCTTCTCCGATGCCGCCGCCACCTCCTCTTATTTCTCATGGTGGCTCCGTCGTCACGTGATACCCCACCTCTACTGCTGCCTTTTAATTGATTGGAGATATGGGATTTCTGTTGTGTTCTTGCTCATTTTTTTTTCGAGAGCAATAGATTTTTGTAATTTCATCTTTCTTCTCTTTTTAATCTTGGTTAAATCTTGGTTAATGTGTGAACTTTTCTTTTTTCAGTTTCATATAGGAAAGTGAAGATTTAAACTTCTGATCTTAAGTCAAAATTATAAAACTATAATGAATTACGTTTAATTTGATGGTGTCTAGTTTTTTTTTTTTTCAATTTAAATTTAGTGTGAGATGTTTTTTTTAATTATATTGCAAAGAAAAAAATAGAAAAAAAAGAGTGATTTTAGTGATAAATTTGATGTGGAGTGTACTAATCTCAAAGCTTTGGTTTTTAAGGATAGATGCCTCGAAGCTTTGTTAGTCTCTATGTTTATCTTAAAGTAATGAATAAATTTTAATTTGGG

mRNA sequence

ATAATATATAAAATTAGGTTAAACCTAAATAATTTGTTGGTATCACTATTCAATACAAGAAGTCCCAAATTTTGTCATTGCCCTATAAATCACCACATCTTTGGAGTTCTCATTTCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTCTTCTCTTCTTTTCTTCTTCTGCCATGGCAGCAGATTCCTCCACAGGCTTAAAGGGGAAGATCTCTAGCCTTCCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGTCTTTTCAATTCCGCAGCTTTGGCAGCTTTCATGGCCGAAGAAATTCTCTGCAGACTCATCCGAGACCTCGTCAGTGCCGCCAGAACCGACGCCGTTCTGCCGCCTTCTCCGATGCCGCCGCCACCTCCTCTTATTTCTCATGGTGGCTCCGTCGTCACGTGATACCCCACCTCTACTGCTGCCTTTTAATTGATTGGAGATATGGGATTTCTGTTGTGTTCTTGCTCATTTTTTTTTCGAGAGCAATAGATTTTTGTAATTTCATCTTTCTTCTCTTTTTAATCTTGGTTAAATCTTGGTTAATGTGTGAACTTTTCTTTTTTCAGTTTCATATAGGAAAGTGAAGATTTAAACTTCTGATCTTAAGTCAAAATTATAAAACTATAATGAATTACGTTTAATTTGATGGTGTCTAGTTTTTTTTTTTTTCAATTTAAATTTAGTGTGAGATGTTTTTTTTAATTATATTGCAAAGAAAAAAATAGAAAAAAAAGAGTGATTTTAGTGATAAATTTGATGTGGAGTGTACTAATCTCAAAGCTTTGGTTTTTAAGGATAGATGCCTCGAAGCTTTGTTAGTCTCTATGTTTATCTTAAAGTAATGAATAAATTTTAATTTGGG

Coding sequence (CDS)

ATGGCAGCAGATTCCTCCACAGGCTTAAAGGGGAAGATCTCTAGCCTTCCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGTCTTTTCAATTCCGCAGCTTTGGCAGCTTTCATGGCCGAAGAAATTCTCTGCAGACTCATCCGAGACCTCGTCAGTGCCGCCAGAACCGACGCCGTTCTGCCGCCTTCTCCGATGCCGCCGCCACCTCCTCTTATTTCTCATGGTGGCTCCGTCGTCACGTGA

Protein sequence

MAADSSTGLKGKISSLPPKRGRIKAQIFESLFNSAALAAFMAEEILCRLIRDLVSAARTDAVLPPSPMPPPPPLISHGGSVVT

Homology

[Close]

BLAST of Bhi08G000295 vs. TrEMBL
Match: tr|A0A0A0LS06|A0A0A0LS06_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.6e-16
Identity = 56/81 (69.14%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MAADSSTGLKGKISSLPPKRGRIKAQIFESLFNSAALAAFMAEEILCRLIRDLVSAART- 60
          MAA SST  KGKI +LPPKRGRIKAQI ESL NSAALA FMAEEILCR IRDLV++ART 
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 DAVLPPSXXXXXXXXISHGGS 81
          DA  PP         I HG S
Sbjct: 61 DA--PPPYPAPPPPLIFHGVS 79

[Close]

BLAST of Bhi08G000295 vs. NCBI nr
Match: KGN64715.1 (hypothetical protein Csa_1G077160 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 9.9e-16
Identity = 56/81 (69.14%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MAADSSTGLKGKISSLPPKRGRIKAQIFESLFNSAALAAFMAEEILCRLIRDLVSAART- 60
          MAA SST  KGKI +LPPKRGRIKAQI ESL NSAALA FMAEEILCR IRDLV++ART 
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 DAVLPPSXXXXXXXXISHGGS 81
          DA  PP         I HG S
Sbjct: 61 DA--PPPYPAPPPPLIFHGVS 79

The following BLAST results are available for this feature:

BLAST of Bhi08G000295 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G000295 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi08G000295 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LS06\|A0A0A0LS06_CUCSA	6.6e-16	69.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1	[more]

BLAST of Bhi08G000295 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64715.1	9.9e-16	69.14	hypothetical protein Csa_1G077160 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000295	Bhi08M000295	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi08G000295	Csa1G077160	Cucumber (Chinese Long) v2	cuwgoB042
Bhi08G000295	ClCG03G002040	Watermelon (Charleston Gray)	wcgwgoB348
Bhi08G000295	CSPI01G12490	Wild cucumber (PI 183967)	cpiwgoB042
Bhi08G000295	CmoCh13G001680	Cucurbita moschata (Rifu)	cmowgoB0253
Bhi08G000295	Cp4.1LG20g08920	Cucurbita pepo (Zucchini)	cpewgoB0636
Bhi08G000295	CsGy1G021920	Cucumber (Gy14) v2	cgybwgoB038
Bhi08G000295	MELO3C026843.2	Melon (DHL92) v3.6.1	medwgoB170
Bhi08G000295	Cla008294	Watermelon (97103) v1	wgowmB479
Bhi08G000295	Cla97C03G053040	Watermelon (97103) v2	wgowmbB478

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000295	Cucurbita maxima (Rimu)	cmawgoB0589
Bhi08G000295	Cucurbita moschata (Rifu)	cmowgoB0252
Bhi08G000295	Cucurbita moschata (Rifu)	cmowgoB0586
Bhi08G000295	Cucurbita pepo (Zucchini)	cpewgoB0708
Bhi08G000295	Bottle gourd (USVL1VR-Ls)	lsiwgoB093
Bhi08G000295	Melon (DHL92) v3.5.1	mewgoB145
Bhi08G000295	Watermelon (Charleston Gray)	wcgwgoB317
Bhi08G000295	Watermelon (97103) v2	wgowmbB469
Bhi08G000295	Watermelon (97103) v1	wgowmB522
Bhi08G000295	Silver-seed gourd	carwgoB0533
Bhi08G000295	Silver-seed gourd	carwgoB0860