Cla008294 (gene) Watermelon (97103) v1

Overview
NameCla008294
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 2113268 .. 2113516 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATTTCAAGCCTACCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGCCTTGTCAACTCCGCAGCTTTGGCGGCCTTCATGGCCCAAGAATTACTCTGCAGACTCATCCGAGACCTCGTCACCGGCGCCAGAACCGACGCCGTTTCGCCGCCTTCTCCGCCGCCGCCGCCTCCTCTTATTTCTCATGGAGGCTCCCTCGTCACGTGA

mRNA sequence

ATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATTTCAAGCCTACCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGCCTTGTCAACTCCGCAGCTTTGGCGGCCTTCATGGCCCAAGAATTACTCTGCAGACTCATCCGAGACCTCGTCACCGGCGCCAGAACCGACGCCGTTTCGCCGCCTTCTCCGCCGCCGCCGCCTCCTCTTATTTCTCATGGAGGCTCCCTCGTCACGTGA

Coding sequence (CDS)

ATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATTTCAAGCCTACCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGCCTTGTCAACTCCGCAGCTTTGGCGGCCTTCATGGCCCAAGAATTACTCTGCAGACTCATCCGAGACCTCGTCACCGGCGCCAGAACCGACGCCGTTTCGCCGCCTTCTCCGCCGCCGCCGCCTCCTCTTATTTCTCATGGAGGCTCCCTCGTCACGTGA

Protein sequence

MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTDAVSPPSPPPPPPLISHGGSLVT
Homology
[Close]
BLAST of Cla008294 vs. TrEMBL
Match: A0A0A0LS06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.8e-24
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 1 

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTD 60
          MAAASST  KGKI +LPPKRGRIKAQI ESLVNSAALA FMA+E+LCR IRDLVT ART 
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 AVSPPSPPPPPPLISHGGS 80
             PP P PPPPLI HG S
Sbjct: 61 DAPPPYPAPPPPLIFHGVS 79

[Close]
BLAST of Cla008294 vs. NCBI nr
Match: gi|700209619|gb|KGN64715.1| (hypothetical protein Csa_1G077160 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 1 

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTD 60
          MAAASST  KGKI +LPPKRGRIKAQI ESLVNSAALA FMA+E+LCR IRDLVT ART 
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 AVSPPSPPPPPPLISHGGS 80
             PP P PPPPLI HG S
Sbjct: 61 DAPPPYPAPPPPLIFHGVS 79

The following BLAST results are available for this feature:
BLAST of Cla008294 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS06_CUCSA7.8e-2477.22Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077160 PE=4 SV=1[more]
BLAST of Cla008294 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209619|gb|KGN64715.1|1.1e-2377.22hypothetical protein Csa_1G077160 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008294Cla008294.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla008294Cla97C03G053040Watermelon (97103) v2wmwmbB124
Cla008294Csa1G077160Cucumber (Chinese Long) v2cuwmB010
Cla008294ClCG03G002040Watermelon (Charleston Gray)wcgwmB223
Cla008294CSPI01G12490Wild cucumber (PI 183967)cpiwmB012
Cla008294CmoCh13G001680Cucurbita moschata (Rifu)cmowmB173
Cla008294Cp4.1LG20g08920Cucurbita pepo (Zucchini)cpewmB507
Cla008294CsGy1G021920Cucumber (Gy14) v2cgybwmB023
Cla008294MELO3C026843.2Melon (DHL92) v3.6.1medwmB143
Cla008294Bhi08G000295Wax gourdwgowmB479
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla008294Cucurbita moschata (Rifu)cmowmB422
Cla008294Cucurbita moschata (Rifu)cmowmB507
Cla008294Cucurbita moschata (Rifu)cmowmB550
Cla008294Melon (DHL92) v3.5.1mewmB093
Cla008294Melon (DHL92) v3.5.1mewmB146
Cla008294Watermelon (Charleston Gray)wcgwmB185
Cla008294Cucumber (Chinese Long) v2cuwmB481
Cla008294Cucurbita pepo (Zucchini)cpewmB280
Cla008294Cucurbita pepo (Zucchini)cpewmB548
Cla008294Cucurbita pepo (Zucchini)cpewmB693
Cla008294Bottle gourd (USVL1VR-Ls)lsiwmB051
Cla008294Bottle gourd (USVL1VR-Ls)lsiwmB185
Cla008294Melon (DHL92) v3.6.1medwmB090
Cla008294Silver-seed gourdcarwmB0440
Cla008294Silver-seed gourdcarwmB0725
Cla008294Cucumber (Chinese Long) v3cucwmB507
Cla008294Watermelon (97103) v2wmwmbB118
Cla008294Watermelon (97103) v2wmwmbB120
Cla008294Wax gourdwgowmB365
Cla008294Watermelon (97103) v1wmwmB086
Cla008294Watermelon (97103) v1wmwmB090
Cla008294Cucurbita maxima (Rimu)cmawmB185
Cla008294Cucurbita maxima (Rimu)cmawmB429
Cla008294Cucurbita maxima (Rimu)cmawmB517