CsGy1G021920 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G021920
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 20687169 .. 20687414 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAGCTTCTTCCACATCTTCAAAGGGGAAGATCTCTACCCTTCCACCAAAACGCGGTCGTATCAAAGCTCAAATTTTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACTCATCCGAGACCTCGTCACCGGTGCTAGAACCGTCGATGTTCCTCCGCCTACTCCCGCACGACCGCCACCTCCTCTTATTTTTCATGGAAGCTCCTTTTAA

mRNA sequence

ATGGCAGCAGCTTCTTCCACATCTTCAAAGGGGAAGATCTCTACCCTTCCACCAAAACGCGGTCGTATCAAAGCTCAAATTTTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACTCATCCGAGACCTCGTCACCGGTGCTAGAACCGTCGATGTTCCTCCGCCTACTCCCGCACGACCGCCACCTCCTCTTATTTTTCATGGAAGCTCCTTTTAA

Coding sequence (CDS)

ATGGCAGCAGCTTCTTCCACATCTTCAAAGGGGAAGATCTCTACCCTTCCACCAAAACGCGGTCGTATCAAAGCTCAAATTTTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACTCATCCGAGACCTCGTCACCGGTGCTAGAACCGTCGATGTTCCTCCGCCTACTCCCGCACGACCGCCACCTCCTCTTATTTTTCATGGAAGCTCCTTTTAA

Protein sequence

MAAASSTSSKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTGARTVDVPPPTPARPPPPLIFHGSSF

Homology

[Close]

BLAST of CsGy1G021920 vs. NCBI nr
Match: KGN64715.1 (hypothetical protein Csa_1G077160 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MAAASSTSSKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTGARTV 60
          MAAASST+SKGKI TLPPKRGRIKAQI ESLVNSAALA FMAEEILCR IRDLVT ARTV
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 DVPPPTPARPPPPLIFHGSSF 82
          D PPP PA PPPPLIFHG SF
Sbjct: 61 DAPPPYPA-PPPPLIFHGVSF 80

[Close]

BLAST of CsGy1G021920 vs. TrEMBL
Match: tr|A0A0A0LS06|A0A0A0LS06_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.5e-28
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MAAASSTSSKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTGARTV 60
          MAAASST+SKGKI TLPPKRGRIKAQI ESLVNSAALA FMAEEILCR IRDLVT ARTV
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 DVPPPTPARPPPPLIFHGSSF 82
          D PPP PA PPPPLIFHG SF
Sbjct: 61 DAPPPYPA-PPPPLIFHGVSF 80

The following BLAST results are available for this feature:

BLAST of CsGy1G021920 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64715.1	1.4e-27	87.65	hypothetical protein Csa_1G077160 [Cucumis sativus]	[more]

BLAST of CsGy1G021920 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G021920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G021920 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LS06\|A0A0A0LS06_CUCSA	9.5e-28	87.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G021920.1	CsGy1G021920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G021920	Cla008294	Watermelon (97103) v1	cgybwmB023
CsGy1G021920	ClCG03G002040	Watermelon (Charleston Gray)	cgybwcgB044
CsGy1G021920	CmoCh13G001680	Cucurbita moschata (Rifu)	cgybcmoB069
CsGy1G021920	Cp4.1LG20g08920	Cucurbita pepo (Zucchini)	cgybcpeB071
CsGy1G021920	MELO3C026843.2	Melon (DHL92) v3.6.1	cgybmedB021
CsGy1G021920	Cla97C03G053040	Watermelon (97103) v2	cgybwmbB042
CsGy1G021920	Bhi08G000295	Wax gourd	cgybwgoB038

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G021920	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G021920	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G021920	Cucumber (Chinese Long) v3	cgybcucB001