CsGy1G021920.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G021920.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 20687169 .. 20687414 (-)
Sequence length	246

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAGCTTCTTCCACATCTTCAAAGGGGAAGATCTCTACCCTTCCACCAAAACGCGGTCGTATCAAAGCTCAAATTTTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACTCATCCGAGACCTCGTCACCGGTGCTAGAACCGTCGATGTTCCTCCGCCTACTCCCGCACGACCGCCACCTCCTCTTATTTTTCATGGAAGCTCCTTTTAA

mRNA sequence

ATGGCAGCAGCTTCTTCCACATCTTCAAAGGGGAAGATCTCTACCCTTCCACCAAAACGCGGTCGTATCAAAGCTCAAATTTTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACTCATCCGAGACCTCGTCACCGGTGCTAGAACCGTCGATGTTCCTCCGCCTACTCCCGCACGACCGCCACCTCCTCTTATTTTTCATGGAAGCTCCTTTTAA

Coding sequence (CDS)

ATGGCAGCAGCTTCTTCCACATCTTCAAAGGGGAAGATCTCTACCCTTCCACCAAAACGCGGTCGTATCAAAGCTCAAATTTTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACTCATCCGAGACCTCGTCACCGGTGCTAGAACCGTCGATGTTCCTCCGCCTACTCCCGCACGACCGCCACCTCCTCTTATTTTTCATGGAAGCTCCTTTTAA

Protein sequence

MAAASSTSSKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTGARTVDVPPPTPARPPPPLIFHGSSF

Homology

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BLAST of CsGy1G021920.1 vs. NCBI nr
Match: KGN64715.1 (hypothetical protein Csa_1G077160 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MAAASSTSSKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTGARTV 60
          MAAASST+SKGKI TLPPKRGRIKAQI ESLVNSAALA FMAEEILCR IRDLVT ARTV
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 DVPPPTPARPPPPLIFHGSSF 82
          D PPP PA PPPPLIFHG SF
Sbjct: 61 DAPPPYPA-PPPPLIFHGVSF 80

[Close]

BLAST of CsGy1G021920.1 vs. TrEMBL
Match: tr|A0A0A0LS06|A0A0A0LS06_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.5e-28
Identity = 71/81 (87.65%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MAAASSTSSKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTGARTV 60
          MAAASST+SKGKI TLPPKRGRIKAQI ESLVNSAALA FMAEEILCR IRDLVT ARTV
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 DVPPPTPARPPPPLIFHGSSF 82
          D PPP PA PPPPLIFHG SF
Sbjct: 61 DAPPPYPA-PPPPLIFHGVSF 80

The following BLAST results are available for this feature:

BLAST of CsGy1G021920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64715.1	1.4e-27	87.65	hypothetical protein Csa_1G077160 [Cucumis sativus]	[more]

BLAST of CsGy1G021920.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G021920.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G021920.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LS06\|A0A0A0LS06_CUCSA	9.5e-28	87.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G021920	CsGy1G021920	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G021920.1.CDS.1	CsGy1G021920.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G021920.1.exon.1	CsGy1G021920.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G021920.1	CsGy1G021920.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..81