ClCG03G002040.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG03G002040.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 2223911 .. 2224159 (+)
Sequence length249
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATTTCAAGCCTACCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGCCTTGTCAACTCCGCAGCTTTGGCGGCCTTCATGGCCCAAGAATTACTCTGCAGACTCATCCGAGACCTCGTCACCGGCGCCAGAACCGACGCCGTTTCGCCGCCTTCTCCGCCGCCGCCGCCTCCTCTTATTTCTCATGGAGGCTCCCTCGTCACGTGA

mRNA sequence

ATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATTTCAAGCCTACCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGCCTTGTCAACTCCGCAGCTTTGGCGGCCTTCATGGCCCAAGAATTACTCTGCAGACTCATCCGAGACCTCGTCACCGGCGCCAGAACCGACGCCGTTTCGCCGCCTTCTCCGCCGCCGCCGCCTCCTCTTATTTCTCATGGAGGCTCCCTCGTCACGTGA

Coding sequence (CDS)

ATGGCAGCAGCTTCTTCCACAGGCTTAAAGGGGAAGATTTCAAGCCTACCCCCAAAACGCGGTCGTATCAAGGCTCAAATTTTTGAGAGCCTTGTCAACTCCGCAGCTTTGGCGGCCTTCATGGCCCAAGAATTACTCTGCAGACTCATCCGAGACCTCGTCACCGGCGCCAGAACCGACGCCGTTTCGCCGCCTTCTCCGCCGCCGCCGCCTCCTCTTATTTCTCATGGAGGCTCCCTCGTCACGTGA

Protein sequence

MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTDAVSPPSPPPPPPLISHGGSLVT
Homology
[Close]
BLAST of ClCG03G002040.1 vs. TrEMBL
Match: A0A0A0LS06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.8e-24
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 1 

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTD 60
          MAAASST  KGKI +LPPKRGRIKAQI ESLVNSAALA FMA+E+LCR IRDLVT ART 
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 AVSPPSPPPPPPLISHGGS 80
             PP P PPPPLI HG S
Sbjct: 61 DAPPPYPAPPPPLIFHGVS 79

[Close]
BLAST of ClCG03G002040.1 vs. NCBI nr
Match: gi|700209619|gb|KGN64715.1| (hypothetical protein Csa_1G077160 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 1 

Query: 1  MAAASSTGLKGKISSLPPKRGRIKAQIFESLVNSAALAAFMAQELLCRLIRDLVTGARTD 60
          MAAASST  KGKI +LPPKRGRIKAQI ESLVNSAALA FMA+E+LCR IRDLVT ART 
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 AVSPPSPPPPPPLISHGGS 80
             PP P PPPPLI HG S
Sbjct: 61 DAPPPYPAPPPPLIFHGVS 79

The following BLAST results are available for this feature:
BLAST of ClCG03G002040.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS06_CUCSA7.8e-2477.22Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077160 PE=4 SV=1[more]
BLAST of ClCG03G002040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209619|gb|KGN64715.1|1.1e-2377.22hypothetical protein Csa_1G077160 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG03G002040ClCG03G002040gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG03G002040.1ClCG03G002040.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG03G002040.1.cds1ClCG03G002040.1.cds1CDS