Csa1G119910 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G119910
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 9075597 .. 9076168 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAATTCAACAACCTAACCCTCATTTCCACTAAATACTTCAATTACAAGTCCCAATAACAACAGAAAAGAAACTTCCAAAACTTAGCGTTTTCTTTCTCCTCTTTTGATTTTCATTCCAAAAATCTAATCAGCCCTTTTCTTCCCTCCTCTCCTCATTATAGTTAACAGAGGTTTGTGTGAAAAATGAGAAGACTAACACTTGCTGCAATCCTCATGTTGGTGTTGATCACCTCGGTCATGCTAATTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGATTGATATAAACAAGCAGAGAGAGCGGGAGATCAACGAGAATGAGAAGGCAAAAACTAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCTTAGAAGAGATGTGGATTGTTGGAGTAACGCAAAACAAAGTACGGACTAATGTAGATATACACAATCAAAGTTAGCCGGCTAAATGTTTTTGTGTATCTAAATAAATAACTAAGACTTCGGTTTGTAATCATTCGCCGGCTAGTTATAGTACTTTACATCTTTCCGTTCTGTTTTTGTAATATATGATGGAG

mRNA sequence

ATGAGAAGACTAACACTTGCTGCAATCCTCATGTTGGTGTTGATCACCTCGGTCATGCTAATTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGATTGATATAAACAAGCAGAGAGAGCGGGAGATCAACGAGAATGAGAAGGCAAAAACTAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCTTAGAAGAGATGTGGATTGTTGGAGTAACGCAAAACAAAGTACGGACTAA

Coding sequence (CDS)

ATGAGAAGACTAACACTTGCTGCAATCCTCATGTTGGTGTTGATCACCTCGGTCATGCTAATTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGATTGATATAAACAAGCAGAGAGAGCGGGAGATCAACGAGAATGAGAAGGCAAAAACTAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCTTAGAAGAGATGTGGATTGTTGGAGTAACGCAAAACAAAGTACGGACTAA

Protein sequence

MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEYNHHGCLRRDVDCWSNAKQSTD*

Homology

[Close]

BLAST of Csa1G119910 vs. TrEMBL
Match: A0A0A0LV16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119910 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.5e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60
          MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCLRRDVDCWSNAKQSTD 82
          NHHGCLRRDVDCWSNAKQSTD
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

[Close]

BLAST of Csa1G119910 vs. NCBI nr
Match: gi|700209728|gb|KGN64824.1| (hypothetical protein Csa_1G119910 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 3.6e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60
          MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCLRRDVDCWSNAKQSTD 82
          NHHGCLRRDVDCWSNAKQSTD
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

The following BLAST results are available for this feature:

BLAST of Csa1G119910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV16_CUCSA	2.5e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119910 PE=4 SV=1	[more]

BLAST of Csa1G119910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209728\|gb\|KGN64824.1\|	3.6e-38	100.00	hypothetical protein Csa_1G119910 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G119910.1	Csa1G119910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 32..52 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G119910	Cla005105	Watermelon (97103) v1	cuwmB010
Csa1G119910	ClCG03G002910	Watermelon (Charleston Gray)	cuwcgB037
Csa1G119910	Lsi03G000240	Bottle gourd (USVL1VR-Ls)	culsiB044
Csa1G119910	Cla97C03G053990	Watermelon (97103) v2	cuwmbB034
Csa1G119910	CSPI01G13600	Wild cucumber (PI 183967)	cpicuB000
Csa1G119910	Cp4.1LG20g07200	Cucurbita pepo (Zucchini)	cpecuB516

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G119910	Silver-seed gourd	carcuB0360
Csa1G119910	Silver-seed gourd	carcuB0472
Csa1G119910	Wax gourd	cuwgoB016
Csa1G119910	Wax gourd	cuwgoB049
Csa1G119910	Cucumber (Chinese Long) v2	cucuB018
Csa1G119910	Cucurbita maxima (Rimu)	cmacuB203
Csa1G119910	Cucurbita maxima (Rimu)	cmacuB431
Csa1G119910	Cucurbita moschata (Rifu)	cmocuB188
Csa1G119910	Cucurbita moschata (Rifu)	cmocuB421
Csa1G119910	Melon (DHL92) v3.5.1	cumeB015
Csa1G119910	Cucurbita pepo (Zucchini)	cpecuB528
Csa1G119910	Cucumber (Gy14) v2	cgybcuB001
Csa1G119910	Cucumber (Gy14) v2	cgybcuB097
Csa1G119910	Melon (DHL92) v3.6.1	cumedB010