MELO3C035602.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C035602.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionG2/mitotic-specific cyclin S13-7-like isoform X1
Locationchr12 : 13008990 .. 13009253 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCAAAGCTTCAACAATTCAAAGTCGGAATCGATATCACAAGATCTATCATTAGCAATATCTAATTCAACAATTGAAGATCCCTCAACAGTGACTATGGTGCTATTAGGATGCACTCGATGCCTCATGTACATCATGTCTTCTAAATTAGATCTTAAATGTCCTAAGTGTAACAACACTACGCTACTTGATATATTTAATTTGACCAATCAAGTATCTCGAGGAAATTTTGTCGATATGTCACCTGATGTTACTAAATGA

mRNA sequence

ATGGGTCAAAGCTTCAACAATTCAAAGTCGGAATCGATATCACAAGATCTATCATTAGCAATATCTAATTCAACAATTGAAGATCCCTCAACAGTGACTATGGTGCTATTAGGATGCACTCGATGCCTCATGTACATCATGTCTTCTAAATTAGATCTTAAATGTCCTAAGTGTAACAACACTACGCTACTTGATATATTTAATTTGACCAATCAAGTATCTCGAGGAAATTTTGTCGATATGTCACCTGATGTTACTAAATGA

Coding sequence (CDS)

ATGGGTCAAAGCTTCAACAATTCAAAGTCGGAATCGATATCACAAGATCTATCATTAGCAATATCTAATTCAACAATTGAAGATCCCTCAACAGTGACTATGGTGCTATTAGGATGCACTCGATGCCTCATGTACATCATGTCTTCTAAATTAGATCTTAAATGTCCTAAGTGTAACAACACTACGCTACTTGATATATTTAATTTGACCAATCAAGTATCTCGAGGAAATTTTGTCGATATGTCACCTGATGTTACTAAATGA

Protein sequence

MGQSFNNSKSESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIFNLTNQVSRGNFVDMSPDVTK
Homology
[Close]
BLAST of MELO3C035602.2 vs. NCBI nr
Match: PNX88389.1 (hypothetical protein L195_g044492, partial [Trifolium pratense])

HSP 1 Score: 60.1 bits (144), Expect = 4.4e-06
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 8   SKSESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
           ++S S+S   S   S +    P  ++M+L+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 47  TRSASVSPPSSCVSSENGSNSPEAISMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 106

Query: 68  NLTN 72
           N  N
Sbjct: 107 NTEN 110

[Close]
BLAST of MELO3C035602.2 vs. NCBI nr
Match: GAU17469.1 (hypothetical protein TSUD_340120 [Trifolium subterraneum])

HSP 1 Score: 59.3 bits (142), Expect = 7.5e-06
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 0 

Query: 8  SKSESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
          ++S S+S   S   S +    P   +M+L+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 31 TRSASVSSPSSCVSSENGSNSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 90

Query: 68 NLTN 72
          N  N
Sbjct: 91 NTEN 94

[Close]
BLAST of MELO3C035602.2 vs. NCBI nr
Match: GAV66989.1 (hypothetical protein CFOL_v3_10498 [Cephalotus follicularis])

HSP 1 Score: 59.3 bits (142), Expect = 7.5e-06
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 29  PSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIFNLTNQ 73
           P   TMVL+GC RCLMY+M S++D +CPKC +T LLD  N+ N+
Sbjct: 79  PEATTMVLVGCPRCLMYVMISEVDPQCPKCKSTVLLDFLNVENK 122

[Close]
BLAST of MELO3C035602.2 vs. NCBI nr
Match: XP_022888450.1 (uncharacterized protein LOC111403986 [Olea europaea var. sylvestris])

HSP 1 Score: 59.3 bits (142), Expect = 7.5e-06
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 10  SESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIFNL 69
           S  +S+D SL  SNS    P   +MVL+GC RCLMY+M ++ D KCPKC +T LLD+ + 
Sbjct: 88  SSELSRDESLLYSNS----PEATSMVLVGCPRCLMYVMLAEEDPKCPKCKSTVLLDVIHQ 145

Query: 70  TN 72
            N
Sbjct: 148 KN 145

[Close]
BLAST of MELO3C035602.2 vs. NCBI nr
Match: PPD73206.1 (hypothetical protein GOBAR_DD29862 [Gossypium barbadense])

HSP 1 Score: 59.3 bits (142), Expect = 7.5e-06
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 29  PSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIFNLTNQVSRGN 78
           P  ++MVL+GC RCLMY+M S++D KCPKC +T LLD+F+  N     N
Sbjct: 61  PEGMSMVLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDLFSQLNAKKASN 109

[Close]
BLAST of MELO3C035602.2 vs. TAIR10
Match: AT5G06270.1 (unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-08
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 29  PSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF--NLTN 72
           P T +MVL+GC RCLMY+M S+ D KCPKC +T LLD    N TN
Sbjct: 61  PETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATN 105

[Close]
BLAST of MELO3C035602.2 vs. TAIR10
Match: AT3G11600.1 (unknown protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 3  QSFNNSKSESISQDLSLAISNSTIEDPSTVT-MVLLGCTRCLMYIMSSKLDLKCPKCNNT 62
          +S N S + S S  +S   S +  E+  T+T MVL+GC RCLMY+M S  D KCPKC +T
Sbjct: 31 RSPNRSNTTSPSSCVS---SETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKST 90

Query: 63 TLLD 66
           LLD
Sbjct: 91 VLLD 91

[Close]
BLAST of MELO3C035602.2 vs. TrEMBL
Match: tr|A0A2K3MC92|A0A2K3MC92_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g044492 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-06
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 8   SKSESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
           ++S S+S   S   S +    P  ++M+L+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 47  TRSASVSPPSSCVSSENGSNSPEAISMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 106

Query: 68  NLTN 72
           N  N
Sbjct: 107 NTEN 110

[Close]
BLAST of MELO3C035602.2 vs. TrEMBL
Match: tr|W9SE60|W9SE60_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018856 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-06
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 10  SESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIFNL 69
           S  ++QD SL  SNS    P   +MVL+GC RCLMY+M S+ D KCPKC +T LLD  + 
Sbjct: 47  SSELNQDDSLRYSNS----PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHD 106

Query: 70  TNQVSR 76
            N  ++
Sbjct: 107 NNATTQ 108

[Close]
BLAST of MELO3C035602.2 vs. TrEMBL
Match: tr|A0A2P5QF74|A0A2P5QF74_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD29862 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-06
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 29  PSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIFNLTNQVSRGN 78
           P  ++MVL+GC RCLMY+M S++D KCPKC +T LLD+F+  N     N
Sbjct: 61  PEGMSMVLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDLFSQLNAKKASN 109

[Close]
BLAST of MELO3C035602.2 vs. TrEMBL
Match: tr|A0A1Q3BGG1|A0A1Q3BGG1_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10498 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-06
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 29  PSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIFNLTNQ 73
           P   TMVL+GC RCLMY+M S++D +CPKC +T LLD  N+ N+
Sbjct: 79  PEATTMVLVGCPRCLMYVMISEVDPQCPKCKSTVLLDFLNVENK 122

[Close]
BLAST of MELO3C035602.2 vs. TrEMBL
Match: tr|A0A072U397|A0A072U397_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25499448 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.5e-06
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 0 

Query: 8   SKSESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
           ++S S+S   S   S +    P   +M+L+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 44  TRSASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 103

Query: 68  NLTN 72
           N  N
Sbjct: 104 NAEN 107

The following BLAST results are available for this feature:
BLAST of MELO3C035602.2 vs. NCBI nr
Match NameE-valueIdentityDescription
PNX88389.14.4e-0645.31hypothetical protein L195_g044492, partial [Trifolium pratense][more]
GAU17469.17.5e-0645.31hypothetical protein TSUD_340120 [Trifolium subterraneum][more]
GAV66989.17.5e-0656.82hypothetical protein CFOL_v3_10498 [Cephalotus follicularis][more]
XP_022888450.17.5e-0650.00uncharacterized protein LOC111403986 [Olea europaea var. sylvestris][more]
PPD73206.17.5e-0653.06hypothetical protein GOBAR_DD29862 [Gossypium barbadense][more]
BLAST of MELO3C035602.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G06270.12.0e-0860.00unknown protein[more]
AT3G11600.11.1e-0650.00unknown protein[more]
BLAST of MELO3C035602.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035602.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2K3MC92|A0A2K3MC92_TRIPR2.9e-0645.31Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g04449... [more]
tr|W9SE60|W9SE60_9ROSA4.9e-0648.48Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018856 PE=4 SV=1[more]
tr|A0A2P5QF74|A0A2P5QF74_GOSBA4.9e-0653.06Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD29862 PE=4 SV... [more]
tr|A0A1Q3BGG1|A0A1Q3BGG1_CEPFO4.9e-0656.82Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10498 PE=4... [more]
tr|A0A072U397|A0A072U397_MEDTR6.5e-0645.31Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25499448 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035602.2.1MELO3C035602.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33177:SF11SUBFAMILY NOT NAMEDcoord: 8..72
NoneNo IPR availablePANTHERPTHR33177FAMILY NOT NAMEDcoord: 8..72

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C035602.2Cucsa.319620Cucumber (Gy14) v1cgymedB528
MELO3C035602.2CmaCh13G003460Cucurbita maxima (Rimu)cmamedB216
MELO3C035602.2CmoCh13G003690Cucurbita moschata (Rifu)cmomedB209
MELO3C035602.2Lsi02G011950Bottle gourd (USVL1VR-Ls)lsimedB192
MELO3C035602.2Cla011048Watermelon (97103) v1medwmB161
MELO3C035602.2ClCG01G011650Watermelon (Charleston Gray)medwcgB133
MELO3C035602.2Cla97C01G011280Watermelon (97103) v2medwmbB132
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C035602.2Cucumber (Gy14) v2cgybmedB009
MELO3C035602.2Cucurbita maxima (Rimu)cmamedB221
MELO3C035602.2Cucurbita pepo (Zucchini)cpemedB006
MELO3C035602.2Cucurbita pepo (Zucchini)cpemedB033
MELO3C035602.2Wild cucumber (PI 183967)cpimedB011
MELO3C035602.2Cucumber (Chinese Long) v2cumedB010
MELO3C035602.2Melon (DHL92) v3.6.1medmedB071
MELO3C035602.2Cucumber (Chinese Long) v3cucmedB009