CmoCh13G003690 (gene) Cucurbita moschata (Rifu)

NameCmoCh13G003690
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionGb:AAF02129.1, putative
LocationCmo_Chr13 : 4711678 .. 4713949 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCAGCTGCTCGAAGTTGCAGCATCTCCGTCGAAAGTAAGTAAACCAAGTTATCATTTGTTAAGACGTATATAGGCAGATTTCTTTCCCAGCTGTTGTTTTCGGAAACTTCTGGATAGGGATATCACGTCTGAACGGAATTCTTTTTGGTTAAAGAATCCCTTTCAAGTTGCTCCGGAACAATTAAGAGATCTTCTAGAAGGCCGTTTAGGCCTTGAATCCTGTCCTGGACTTTCCATCGGTGGTCTGACCTTGCTGAAAGATAGGTCATGGGTGCAAATGAGCGATCTATTTTTGAGTCTTGAAGCAATATTTCCCTTAAATGCATATCCAGCTTATTGTGAACATCTCATTTTTCTCTTGAAACAAATCCTTATTAACCTCGATTTCTTATCTTTTCTTTTCTGAACCTATTCTATTGGTCATGCTGAATTTGACATCCCTTATCTCTTAAAGCAACAAGAAAGGAGTAGGATGCACGAACCTCCTAACATGTTTTATTGTTGCATTAAATGATGGGCGGTTGGTTGCGTGTAGAGGGAATGTCATTTTGAAACATGTGATTTAGATGTCAAGACATTGGACATATAAATTCTTGCCTAGCACGCCAAATGGCATAATAATTGGTGTAATAAAGTAGGGAGCAAATCATTTAAAGCAAATCTTTCTATCTTATCATCAGCATAGGAAATGATTCTAATGATTCTGTTCTTTGTTAGAACCCGAAAATTGAACAAAGCTCCTCAACGAACTCATACCATAAACACTCACTCAATTGCTTATTAACATACCTAACCAACTTTGTTTTGATGAGGAATGCTTACACGCATCTTTGTGGCCATAATATGCTCCTCTTGTTCAATAATACCACGTCTCTTAACATGGTCCAAGCTAGAGGTTGATGTTCATATCTATACAAGTCTAGTACCAAACAAGAAAAATTAAATGTATAAATTGATAAGACAACGAAAATTAATCAATTTTGTTGATGAAAGAAACCATTTTATGGTTCTGGAGAGTGAGAAGATTTGTACCACTTTTAAAAATTCAAACTCAATTAATTTCTTATAATTAATGATATAATTTTTTTCCAAAAAATGAATTTGATACGTTTCTATTCTAGTAGTTTGTTTTTTCCTTTTCAAACATTTTGAATATTCTTTTTTGTTGTTGCCGCTGTGTTTTATAGTTCTCGAACTTTCTATTATGTAATAGATTAGTCTTGCATTGGATCCATCCGGCTCAAAATCCAATGAATCGATAGTTAACTATTTTTTTAGTGATTGCCATCGCAAAGCTAGTCGTTGCCAGCTCTAATGGTTGAAAATATCCAAACTTGCTTACCCACCCCACCTCATACGACTAGTTTGGGGGGAGGGGTTGGTTGTTCGCCTTTTAGAGACACCTAAAAACCTCACATTCGAAGGAAGCATAAAAAATTCTCAGCGCGCAAGAATTAGGATTATTGTACCTATCATAATCCATGACGTTCTTTTATGAAAATTTCAATTTTTTTACACTATGTCCAATAAATACGTCAATTTTGAAAAATTCAAACAAATTCAAGGTCAAACTAATCGATATTTTAACCTTTTGAATATTTTAATTTTTTTTTTAAAAGATGCGAAAAACACCTCATTTAAATAAGATGAACTCGAATTTTGATTTGATTTGTCGAATGATTGGTGGTAGGTCACTGAACTTGATAGGGTTGAGAAGTCATATCATAAACTTGTGAATCAGAAGTCATATTGTGTCCATATCAAAGGAGTTAATGAGTTGATTTTCAAAACCAAATTGGATATTCCTACCGGCAAAACTCAAAGGTCAATGTTCAAACTTCGTATTAAATGATAATTTAGACATTGTGAATTGTATACTCCATGTTTGGCCGTCTTTCATCTCTTATAAATCATATACAGCTTCCAATTGTTGATACAAGATTTGATCCTTCAATTCTTCCTTCTTCTCTTTTCTCCGTTTTTCCATTGAAGAACTCTAAATTATGGGTCGAAATTTCAACCATCCGAAGTCAGAACCGATACTGCAAGATTTGTTTTTGGCAGGATCTAGCTCGAAAACCGAGGACGCTACGACATCGGTCATGGTGCTACTAGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTTGATCTCAAGTGTCCCAAATGTAATAACACTACGTTGCTCGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAATCTTGTTGACATGTCAATCGACGTTGCTAAATGA

mRNA sequence

ATGACGCAGCTGCTCGAAGTTGCAGCATCTCCGTCGAAAAATCCCTTTCAAGTTGCTCCGGAACAATTAAGAGATCTTCTAGAAGGCCGTTTAGGCCTTGAATCCTGTCCTGGACTTTCCATCGGTGGTCTGACCTTGCTGAAAGATAGGTCATGGGTCACTGAACTTGATAGGGTTGAGAAGTCATATCATAAACTTGTGAATCAGAAGTCATATTGTGTCCATATCAAAGGAGTTAATGAGTTGATTTTCAAAACCAAATTGGATATTCCTACCGGCAAAACTCAAAGCTCGAAAACCGAGGACGCTACGACATCGGTCATGGTGCTACTAGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTTGATCTCAAGTGTCCCAAATGTAATAACACTACGTTGCTCGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAATCTTGTTGACATGTCAATCGACGTTGCTAAATGA

Coding sequence (CDS)

ATGACGCAGCTGCTCGAAGTTGCAGCATCTCCGTCGAAAAATCCCTTTCAAGTTGCTCCGGAACAATTAAGAGATCTTCTAGAAGGCCGTTTAGGCCTTGAATCCTGTCCTGGACTTTCCATCGGTGGTCTGACCTTGCTGAAAGATAGGTCATGGGTCACTGAACTTGATAGGGTTGAGAAGTCATATCATAAACTTGTGAATCAGAAGTCATATTGTGTCCATATCAAAGGAGTTAATGAGTTGATTTTCAAAACCAAATTGGATATTCCTACCGGCAAAACTCAAAGCTCGAAAACCGAGGACGCTACGACATCGGTCATGGTGCTACTAGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTTGATCTCAAGTGTCCCAAATGTAATAACACTACGTTGCTCGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAATCTTGTTGACATGTCAATCGACGTTGCTAAATGA
BLAST of CmoCh13G003690 vs. TrEMBL
Match: A0A072VKL8_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g058120 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1

Query: 86  TKLDIPTGKTQSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLAN 145
           T+L+   G  Q   +     + MVL+GC +CLMYVM S+ D KCPKC +T LLD H+  N
Sbjct: 49  TELNQEDGNNQQRYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFHHENN 108

Query: 146 QASKKN 152
            + ++N
Sbjct: 109 NSKRRN 114

BLAST of CmoCh13G003690 vs. TAIR10
Match: AT3G11600.1 (AT3G11600.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1

Query: 95  TQSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD 140
           +++++ E+ T + MVL+GC +CLMYVM S  D KCPKC +T LLD
Sbjct: 47  SETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLD 91

BLAST of CmoCh13G003690 vs. TAIR10
Match: AT5G06270.1 (AT5G06270.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-07
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1

Query: 100 TEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQAS 149
           T   TTS MVL+GC +CLMYVM S+ D KCPKC +T LLD +H  A  A+
Sbjct: 59  TSPETTS-MVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNAN 107

BLAST of CmoCh13G003690 vs. NCBI nr
Match: gi|922401569|ref|XP_013467921.1| (hypothetical protein MTR_1g058120 [Medicago truncatula])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1

Query: 86  TKLDIPTGKTQSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLAN 145
           T+L+   G  Q   +     + MVL+GC +CLMYVM S+ D KCPKC +T LLD H+  N
Sbjct: 49  TELNQEDGNNQQRYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFHHENN 108

Query: 146 QASKKN 152
            + ++N
Sbjct: 109 NSKRRN 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A072VKL8_MEDTR1.7e-0643.94Uncharacterized protein OS=Medicago truncatula GN=MTR_1g058120 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G11600.11.8e-0753.33 unknown protein[more]
AT5G06270.13.1e-0758.00 unknown protein[more]
Match NameE-valueIdentityDescription
gi|922401569|ref|XP_013467921.1|2.4e-0643.94hypothetical protein MTR_1g058120 [Medicago truncatula][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003690.1CmoCh13G003690.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33177FAMILY NOT NAMEDcoord: 108..160
score: 4.9

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003690Cucurbita maxima (Rimu)cmacmoB395
CmoCh13G003690Wild cucumber (PI 183967)cmocpiB208
CmoCh13G003690Cucumber (Chinese Long) v2cmocuB206
CmoCh13G003690Melon (DHL92) v3.5.1cmomeB182
CmoCh13G003690Cucurbita pepo (Zucchini)cmocpeB180
CmoCh13G003690Cucumber (Gy14) v2cgybcmoB072
CmoCh13G003690Cucumber (Chinese Long) v3cmocucB0239