CmoCh13G003690 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G003690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Gb:AAF02129.1, putative
Location	Cmo_Chr13 : 4711678 .. 4713949 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCAGCTGCTCGAAGTTGCAGCATCTCCGTCGAAAGTAAGTAAACCAAGTTATCATTTGTTAAGACGTATATAGGCAGATTTCTTTCCCAGCTGTTGTTTTCGGAAACTTCTGGATAGGGATATCACGTCTGAACGGAATTCTTTTTGGTTAAAGAATCCCTTTCAAGTTGCTCCGGAACAATTAAGAGATCTTCTAGAAGGCCGTTTAGGCCTTGAATCCTGTCCTGGACTTTCCATCGGTGGTCTGACCTTGCTGAAAGATAGGTCATGGGTGCAAATGAGCGATCTATTTTTGAGTCTTGAAGCAATATTTCCCTTAAATGCATATCCAGCTTATTGTGAACATCTCATTTTTCTCTTGAAACAAATCCTTATTAACCTCGATTTCTTATCTTTTCTTTTCTGAACCTATTCTATTGGTCATGCTGAATTTGACATCCCTTATCTCTTAAAGCAACAAGAAAGGAGTAGGATGCACGAACCTCCTAACATGTTTTATTGTTGCATTAAATGATGGGCGGTTGGTTGCGTGTAGAGGGAATGTCATTTTGAAACATGTGATTTAGATGTCAAGACATTGGACATATAAATTCTTGCCTAGCACGCCAAATGGCATAATAATTGGTGTAATAAAGTAGGGAGCAAATCATTTAAAGCAAATCTTTCTATCTTATCATCAGCATAGGAAATGATTCTAATGATTCTGTTCTTTGTTAGAACCCGAAAATTGAACAAAGCTCCTCAACGAACTCATACCATAAACACTCACTCAATTGCTTATTAACATACCTAACCAACTTTGTTTTGATGAGGAATGCTTACACGCATCTTTGTGGCCATAATATGCTCCTCTTGTTCAATAATACCACGTCTCTTAACATGGTCCAAGCTAGAGGTTGATGTTCATATCTATACAAGTCTAGTACCAAACAAGAAAAATTAAATGTATAAATTGATAAGACAACGAAAATTAATCAATTTTGTTGATGAAAGAAACCATTTTATGGTTCTGGAGAGTGAGAAGATTTGTACCACTTTTAAAAATTCAAACTCAATTAATTTCTTATAATTAATGATATAATTTTTTTCCAAAAAATGAATTTGATACGTTTCTATTCTAGTAGTTTGTTTTTTCCTTTTCAAACATTTTGAATATTCTTTTTTGTTGTTGCCGCTGTGTTTTATAGTTCTCGAACTTTCTATTATGTAATAGATTAGTCTTGCATTGGATCCATCCGGCTCAAAATCCAATGAATCGATAGTTAACTATTTTTTTAGTGATTGCCATCGCAAAGCTAGTCGTTGCCAGCTCTAATGGTTGAAAATATCCAAACTTGCTTACCCACCCCACCTCATACGACTAGTTTGGGGGGAGGGGTTGGTTGTTCGCCTTTTAGAGACACCTAAAAACCTCACATTCGAAGGAAGCATAAAAAATTCTCAGCGCGCAAGAATTAGGATTATTGTACCTATCATAATCCATGACGTTCTTTTATGAAAATTTCAATTTTTTTACACTATGTCCAATAAATACGTCAATTTTGAAAAATTCAAACAAATTCAAGGTCAAACTAATCGATATTTTAACCTTTTGAATATTTTAATTTTTTTTTTAAAAGATGCGAAAAACACCTCATTTAAATAAGATGAACTCGAATTTTGATTTGATTTGTCGAATGATTGGTGGTAGGTCACTGAACTTGATAGGGTTGAGAAGTCATATCATAAACTTGTGAATCAGAAGTCATATTGTGTCCATATCAAAGGAGTTAATGAGTTGATTTTCAAAACCAAATTGGATATTCCTACCGGCAAAACTCAAAGGTCAATGTTCAAACTTCGTATTAAATGATAATTTAGACATTGTGAATTGTATACTCCATGTTTGGCCGTCTTTCATCTCTTATAAATCATATACAGCTTCCAATTGTTGATACAAGATTTGATCCTTCAATTCTTCCTTCTTCTCTTTTCTCCGTTTTTCCATTGAAGAACTCTAAATTATGGGTCGAAATTTCAACCATCCGAAGTCAGAACCGATACTGCAAGATTTGTTTTTGGCAGGATCTAGCTCGAAAACCGAGGACGCTACGACATCGGTCATGGTGCTACTAGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTTGATCTCAAGTGTCCCAAATGTAATAACACTACGTTGCTCGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAATCTTGTTGACATGTCAATCGACGTTGCTAAATGA

mRNA sequence

ATGACGCAGCTGCTCGAAGTTGCAGCATCTCCGTCGAAAAATCCCTTTCAAGTTGCTCCGGAACAATTAAGAGATCTTCTAGAAGGCCGTTTAGGCCTTGAATCCTGTCCTGGACTTTCCATCGGTGGTCTGACCTTGCTGAAAGATAGGTCATGGGTCACTGAACTTGATAGGGTTGAGAAGTCATATCATAAACTTGTGAATCAGAAGTCATATTGTGTCCATATCAAAGGAGTTAATGAGTTGATTTTCAAAACCAAATTGGATATTCCTACCGGCAAAACTCAAAGCTCGAAAACCGAGGACGCTACGACATCGGTCATGGTGCTACTAGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTTGATCTCAAGTGTCCCAAATGTAATAACACTACGTTGCTCGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAATCTTGTTGACATGTCAATCGACGTTGCTAAATGA

Coding sequence (CDS)

ATGACGCAGCTGCTCGAAGTTGCAGCATCTCCGTCGAAAAATCCCTTTCAAGTTGCTCCGGAACAATTAAGAGATCTTCTAGAAGGCCGTTTAGGCCTTGAATCCTGTCCTGGACTTTCCATCGGTGGTCTGACCTTGCTGAAAGATAGGTCATGGGTCACTGAACTTGATAGGGTTGAGAAGTCATATCATAAACTTGTGAATCAGAAGTCATATTGTGTCCATATCAAAGGAGTTAATGAGTTGATTTTCAAAACCAAATTGGATATTCCTACCGGCAAAACTCAAAGCTCGAAAACCGAGGACGCTACGACATCGGTCATGGTGCTACTAGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTTGATCTCAAGTGTCCCAAATGTAATAACACTACGTTGCTCGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAATCTTGTTGACATGTCAATCGACGTTGCTAAATGA

Homology

[Close]

BLAST of CmoCh13G003690 vs. TrEMBL
Match: A0A072VKL8_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g058120 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 86  TKLDIPTGKTQSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLAN 145
           T+L+   G  Q   +     + MVL+GC +CLMYVM S+ D KCPKC +T LLD H+  N
Sbjct: 49  TELNQEDGNNQQRYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFHHENN 108

Query: 146 QASKKN 152
            + ++N
Sbjct: 109 NSKRRN 114

[Close]

BLAST of CmoCh13G003690 vs. TAIR10
Match: AT3G11600.1 (AT3G11600.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 95  TQSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD 140
           +++++ E+ T + MVL+GC +CLMYVM S  D KCPKC +T LLD
Sbjct: 47  SETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLD 91

[Close]

BLAST of CmoCh13G003690 vs. TAIR10
Match: AT5G06270.1 (AT5G06270.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-07
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1


Query: 100 TEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQAS 149
           T   TTS MVL+GC +CLMYVM S+ D KCPKC +T LLD +H  A  A+
Sbjct: 59  TSPETTS-MVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNAN 107

[Close]

BLAST of CmoCh13G003690 vs. NCBI nr
Match: gi|922401569|ref|XP_013467921.1| (hypothetical protein MTR_1g058120 [Medicago truncatula])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 86  TKLDIPTGKTQSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLAN 145
           T+L+   G  Q   +     + MVL+GC +CLMYVM S+ D KCPKC +T LLD H+  N
Sbjct: 49  TELNQEDGNNQQRYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFHHENN 108

Query: 146 QASKKN 152
            + ++N
Sbjct: 109 NSKRRN 114

The following BLAST results are available for this feature:

BLAST of CmoCh13G003690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G003690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A072VKL8_MEDTR	1.7e-06	43.94	Uncharacterized protein OS=Medicago truncatula GN=MTR_1g058120 PE=4 SV=1	[more]

BLAST of CmoCh13G003690 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11600.1	1.8e-07	53.33	unknown protein	[more]
AT5G06270.1	3.1e-07	58.00	unknown protein	[more]

BLAST of CmoCh13G003690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|922401569\|ref\|XP_013467921.1\|	2.4e-06	43.94	hypothetical protein MTR_1g058120 [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003690.1	CmoCh13G003690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33177	FAMILY NOT NAMED	coord: 108..160 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G003690	Cucsa.319620	Cucumber (Gy14) v1	cgycmoB0880
CmoCh13G003690	CmaCh13G003460	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G003690	Cla011048	Watermelon (97103) v1	cmowmB189
CmoCh13G003690	ClCG01G011650	Watermelon (Charleston Gray)	cmowcgB171
CmoCh13G003690	Lsi02G011950	Bottle gourd (USVL1VR-Ls)	cmolsiB194
CmoCh13G003690	MELO3C035602.2	Melon (DHL92) v3.6.1	cmomedB209
CmoCh13G003690	Cla97C01G011280	Watermelon (97103) v2	cmowmbB192

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G003690	Cucumber (Chinese Long) v3	cmocucB0239
CmoCh13G003690	Cucurbita maxima (Rimu)	cmacmoB395
CmoCh13G003690	Wild cucumber (PI 183967)	cmocpiB208
CmoCh13G003690	Cucumber (Chinese Long) v2	cmocuB206
CmoCh13G003690	Melon (DHL92) v3.5.1	cmomeB182
CmoCh13G003690	Cucurbita pepo (Zucchini)	cmocpeB180
CmoCh13G003690	Cucumber (Gy14) v2	cgybcmoB072