ClCG01G011650 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G011650
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Gb\|AAF02129.1
Location	CG_Chr01 : 19540276 .. 19540539 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAAAGCTTCAACAATCTAAATTCAGAATCGATATCGCAAGATCTGTCGTTAGCTATATCTAACTCGACAATTGAAGATGCCACGACGGTGGCCATGGTGCTACTAGGATGCACTCGATGCCTCATGTACGTCATGTCGTCTAAGTTAGATCTCAAGTGTCCTAAATGTAACGGCACTACATTGCTTGATGTATTCAATTTGGTCAATCAAGCATCTCGAAAAAATGTTGTCGACATGCCGCCCGATGTTGCTAAATGA

mRNA sequence

ATGGGTCAAAGCTTCAACAATCTAAATTCAGAATCGATATCGCAAGATCTGTCGTTAGCTATATCTAACTCGACAATTGAAGATGCCACGACGGTGGCCATGGTGCTACTAGGATGCACTCGATGCCTCATGTACGTCATGTCGTCTAAGTTAGATCTCAAGTGTCCTAAATGTAACGGCACTACATTGCTTGATGTATTCAATTTGGTCAATCAAGCATCTCGAAAAAATGTTGTCGACATGCCGCCCGATGTTGCTAAATGA

Coding sequence (CDS)

ATGGGTCAAAGCTTCAACAATCTAAATTCAGAATCGATATCGCAAGATCTGTCGTTAGCTATATCTAACTCGACAATTGAAGATGCCACGACGGTGGCCATGGTGCTACTAGGATGCACTCGATGCCTCATGTACGTCATGTCGTCTAAGTTAGATCTCAAGTGTCCTAAATGTAACGGCACTACATTGCTTGATGTATTCAATTTGGTCAATCAAGCATCTCGAAAAAATGTTGTCGACATGCCGCCCGATGTTGCTAAATGA

Protein sequence

MGQSFNNLNSESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNLVNQASRKNVVDMPPDVAK

Homology

[Close]

BLAST of ClCG01G011650 vs. TrEMBL
Match: A0A0D2TG15_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G083300 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-07
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 1


Query: 9   NSESISQDLSLAISNSTIEDATTV----------AMVLLGCTRCLMYVMSSKLDLKCPKC 68
           N+   S   S  +S+   +D+TT+          +MVL+GC RCLMYVM S++D KCPKC
Sbjct: 31  NTSVSSSPGSSCVSSEPTDDSTTMMPYPSSPEGMSMVLVGCPRCLMYVMLSEVDPKCPKC 90

Query: 69  NGTTLLDVFNLVNQASRKN 78
             T LLD+F+  N     N
Sbjct: 91  KSTVLLDLFSQHNAKKASN 109

[Close]

BLAST of ClCG01G011650 vs. TrEMBL
Match: A0A072UJ84_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g052230 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.1e-07
Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 1


Query: 4  SFNNLNSESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTL 63
          S  +L++E +       +S    E+  T  M+L+GCTRCLMYVM  ++D KCPKC  T L
Sbjct: 29 SSESLSTECVHSSEGSCVSGDAAEETKT--MLLVGCTRCLMYVMVPEVDPKCPKCKSTVL 88

Query: 64 LDVFNLVNQASRK 77
          LD  N     S+K
Sbjct: 89 LDFLNSEEITSKK 99

[Close]

BLAST of ClCG01G011650 vs. TrEMBL
Match: B7FH31_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-07
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1


Query: 10  SESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNL 69
           S S+S   S   S +        +M+L+GC RCLMYVM S+ D KCPKC+ T LLD  N 
Sbjct: 33  SASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLNA 92

Query: 70  VNQASRKN 78
            N  ++K+
Sbjct: 93  ENNNNKKS 100

[Close]

BLAST of ClCG01G011650 vs. TrEMBL
Match: A0A072U397_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_7g105730 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-07
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1


Query: 10  SESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNL 69
           S S+S   S   S +        +M+L+GC RCLMYVM S+ D KCPKC+ T LLD  N 
Sbjct: 46  SASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLNA 105

Query: 70  VNQASRKN 78
            N  ++K+
Sbjct: 106 ENNNNKKS 113

[Close]

BLAST of ClCG01G011650 vs. TrEMBL
Match: A0A0J8EU07_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g158450 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.0e-07
Identity = 31/68 (45.59%), Postives = 39/68 (57.35%), Query Frame = 1


Query: 10 SESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNL 69
          S S+S   S   S  ++    T +MVL+GC RCLMYVM S+ D KCPKC  T LLD  + 
Sbjct: 26 SASVSPPSSCVSSEISMNSPETTSMVLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDFMHD 85

Query: 70 VNQASRKN 78
           N  +  N
Sbjct: 86 NNDNNNNN 93

[Close]

BLAST of ClCG01G011650 vs. TAIR10
Match: AT3G11600.1 (AT3G11600.1 unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-08
Identity = 31/63 (49.21%), Postives = 36/63 (57.14%), Query Frame = 1


Query: 3  QSFNNLNSESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTT 62
          +S N  N+ S S  +S   +    E+ T  +MVL+GC RCLMYVM S  D KCPKC  T 
Sbjct: 31 RSPNRSNTTSPSSCVSSETNQE--ENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTV 90

Query: 63 LLD 66
          LLD
Sbjct: 91 LLD 91

[Close]

BLAST of ClCG01G011650 vs. TAIR10
Match: AT5G06270.1 (AT5G06270.1 unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 4.4e-08
Identity = 24/35 (68.57%), Postives = 25/35 (71.43%), Query Frame = 1


Query: 31 TVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLD 66
          T +MVL+GC RCLMYVM S+ D KCPKC  T LLD
Sbjct: 63 TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLD 97

[Close]

BLAST of ClCG01G011650 vs. NCBI nr
Match: gi|763788583|gb|KJB55579.1| (hypothetical protein B456_009G083300 [Gossypium raimondii])

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-07
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 1


Query: 9   NSESISQDLSLAISNSTIEDATTV----------AMVLLGCTRCLMYVMSSKLDLKCPKC 68
           N+   S   S  +S+   +D+TT+          +MVL+GC RCLMYVM S++D KCPKC
Sbjct: 31  NTSVSSSPGSSCVSSEPTDDSTTMMPYPSSPEGMSMVLVGCPRCLMYVMLSEVDPKCPKC 90

Query: 69  NGTTLLDVFNLVNQASRKN 78
             T LLD+F+  N     N
Sbjct: 91  KSTVLLDLFSQHNAKKASN 109

[Close]

BLAST of ClCG01G011650 vs. NCBI nr
Match: gi|922367223|ref|XP_013455778.1| (hypothetical protein MTR_4g052230 [Medicago truncatula])

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-07
Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 1


Query: 4  SFNNLNSESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTL 63
          S  +L++E +       +S    E+  T  M+L+GCTRCLMYVM  ++D KCPKC  T L
Sbjct: 29 SSESLSTECVHSSEGSCVSGDAAEETKT--MLLVGCTRCLMYVMVPEVDPKCPKCKSTVL 88

Query: 64 LDVFNLVNQASRK 77
          LD  N     S+K
Sbjct: 89 LDFLNSEEITSKK 99

[Close]

BLAST of ClCG01G011650 vs. NCBI nr
Match: gi|727583833|ref|XP_010464878.1| (PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa])

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-07
Identity = 33/66 (50.00%), Postives = 39/66 (59.09%), Query Frame = 1


Query: 9   NSESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFN 68
           NS S S  +S   +     D TT +MVL+GC RCLMYVM S  D KCPKC  T LLD  +
Sbjct: 37  NSTSPSSCVSSETNQEDEIDTTTTSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLH 96

Query: 69  LVNQAS 75
             N +S
Sbjct: 97  HQNASS 102

[Close]

BLAST of ClCG01G011650 vs. NCBI nr
Match: gi|217071400|gb|ACJ84060.1| (unknown [Medicago truncatula])

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-07
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1


Query: 10  SESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNL 69
           S S+S   S   S +        +M+L+GC RCLMYVM S+ D KCPKC+ T LLD  N 
Sbjct: 33  SASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLNA 92

Query: 70  VNQASRKN 78
            N  ++K+
Sbjct: 93  ENNNNKKS 100

[Close]

BLAST of ClCG01G011650 vs. NCBI nr
Match: gi|922346510|ref|XP_013450169.1| (hypothetical protein MTR_7g105730 [Medicago truncatula])

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-07
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1


Query: 10  SESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNL 69
           S S+S   S   S +        +M+L+GC RCLMYVM S+ D KCPKC+ T LLD  N 
Sbjct: 46  SASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLNA 105

Query: 70  VNQASRKN 78
            N  ++K+
Sbjct: 106 ENNNNKKS 113

The following BLAST results are available for this feature:

BLAST of ClCG01G011650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2TG15_GOSRA	3.2e-07	41.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G083300 PE=4 SV=1	[more]
A0A072UJ84_MEDTR	4.1e-07	42.47	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g052230 PE=4 SV=1	[more]
B7FH31_MEDTR	5.4e-07	44.12	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]
A0A072U397_MEDTR	5.4e-07	44.12	Uncharacterized protein OS=Medicago truncatula GN=MTR_7g105730 PE=4 SV=1	[more]
A0A0J8EU07_BETVU	7.0e-07	45.59	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g158450 PE=4 S...	[more]

BLAST of ClCG01G011650 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11600.1	1.5e-08	49.21	unknown protein	[more]
AT5G06270.1	4.4e-08	68.57	unknown protein	[more]

BLAST of ClCG01G011650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|763788583\|gb\|KJB55579.1\|	4.5e-07	41.77	hypothetical protein B456_009G083300 [Gossypium raimondii]	[more]
gi\|922367223\|ref\|XP_013455778.1\|	5.9e-07	42.47	hypothetical protein MTR_4g052230 [Medicago truncatula]	[more]
gi\|727583833\|ref\|XP_010464878.1\|	5.9e-07	50.00	PREDICTED: uncharacterized protein LOC104745369 [Camelina sativa]	[more]
gi\|217071400\|gb\|ACJ84060.1\|	7.7e-07	44.12	unknown [Medicago truncatula]	[more]
gi\|922346510\|ref\|XP_013450169.1\|	7.7e-07	44.12	hypothetical protein MTR_7g105730 [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G011650.1	ClCG01G011650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33177	FAMILY NOT NAMED	coord: 6..78 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G011650	Cla011048	Watermelon (97103) v1	wcgwmB155
ClCG01G011650	Cla97C01G011280	Watermelon (97103) v2	wcgwmbB089
ClCG01G011650	CmaCh13G003460	Cucurbita maxima (Rimu)	cmawcgB180
ClCG01G011650	CmoCh13G003690	Cucurbita moschata (Rifu)	cmowcgB171
ClCG01G011650	Lsi02G011950	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G011650	MELO3C035602.2	Melon (DHL92) v3.6.1	medwcgB133

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G011650	Silver-seed gourd	carwcgB0000
ClCG01G011650	Cucumber (Chinese Long) v3	cucwcgB024
ClCG01G011650	Cucumber (Gy14) v1	cgywcgB552
ClCG01G011650	Cucurbita maxima (Rimu)	cmawcgB341
ClCG01G011650	Cucurbita moschata (Rifu)	cmowcgB346
ClCG01G011650	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G011650	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G011650	Melon (DHL92) v3.5.1	mewcgB133
ClCG01G011650	Cucurbita pepo (Zucchini)	cpewcgB006
ClCG01G011650	Cucurbita pepo (Zucchini)	cpewcgB029
ClCG01G011650	Cucumber (Gy14) v2	cgybwcgB021