Cla97C01G011280 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G011280
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	E3 ubiquitin-protein ligase
Location	Cla97Chr01 : 18579939 .. 18580202 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAAAGCTTCAACAATCTAAATTCAGAATCGATATCGCAAGATCTGTCGTTAGCTATATCTAACTCGACAATTGAAGATGCCACGACGGTGGCCATGGTGCTACTAGGATGCACTCGATGCCTCATGTACGTCATGTCGTCTAAGTTAGATCTCAAGTGTCCTAAATGTAACGGCACTACATTGCTTGATGTATTCAATTTGGTCAATCAAGCATCTCGAAAAAATGTTGTCGACATGCCGCCCGATGTTGCTAAATGA

mRNA sequence

ATGGGTCAAAGCTTCAACAATCTAAATTCAGAATCGATATCGCAAGATCTGTCGTTAGCTATATCTAACTCGACAATTGAAGATGCCACGACGGTGGCCATGGTGCTACTAGGATGCACTCGATGCCTCATGTACGTCATGTCGTCTAAGTTAGATCTCAAGTGTCCTAAATGTAACGGCACTACATTGCTTGATGTATTCAATTTGGTCAATCAAGCATCTCGAAAAAATGTTGTCGACATGCCGCCCGATGTTGCTAAATGA

Coding sequence (CDS)

ATGGGTCAAAGCTTCAACAATCTAAATTCAGAATCGATATCGCAAGATCTGTCGTTAGCTATATCTAACTCGACAATTGAAGATGCCACGACGGTGGCCATGGTGCTACTAGGATGCACTCGATGCCTCATGTACGTCATGTCGTCTAAGTTAGATCTCAAGTGTCCTAAATGTAACGGCACTACATTGCTTGATGTATTCAATTTGGTCAATCAAGCATCTCGAAAAAATGTTGTCGACATGCCGCCCGATGTTGCTAAATGA

Protein sequence

MGQSFNNLNSESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNLVNQASRKNVVDMPPDVAK

Homology

[Close]

BLAST of Cla97C01G011280 vs. NCBI nr
Match: XP_022888450.1 (uncharacterized protein LOC111403986 [Olea europaea var. sylvestris])

HSP 1 Score: 60.1 bits (144), Expect = 4.4e-06
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 10  SESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNL 69
           S  +S+D SL  SNS   +AT  +MVL+GC RCLMYVM ++ D KCPKC  T LLDV + 
Sbjct: 88  SSELSRDESLLYSNS--PEAT--SMVLVGCPRCLMYVMLAEEDPKCPKCKSTVLLDVIHQ 147

Query: 70  VNQASRK 77
            N ++ K
Sbjct: 148 KNTSTSK 150

[Close]

BLAST of Cla97C01G011280 vs. NCBI nr
Match: PPD73206.1 (hypothetical protein GOBAR_DD29862 [Gossypium barbadense])

HSP 1 Score: 59.7 bits (143), Expect = 5.7e-06
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 9   NSESISQDLSLAISNSTIEDATT----------VAMVLLGCTRCLMYVMSSKLDLKCPKC 68
           N+   S   S  +S+   +D+TT          ++MVL+GC RCLMYVM S++D KCPKC
Sbjct: 31  NTSVSSSPGSSCVSSEPTDDSTTMMPYPSSPEGMSMVLVGCPRCLMYVMLSEVDPKCPKC 90

Query: 69  NGTTLLDVFNLVNQASRKN 78
             T LLD+F+ +N     N
Sbjct: 91  KSTVLLDLFSQLNAKKASN 109

[Close]

BLAST of Cla97C01G011280 vs. NCBI nr
Match: XP_004506211.1 (PREDICTED: uncharacterized protein LOC101502581 [Cicer arietinum])

HSP 1 Score: 59.3 bits (142), Expect = 7.5e-06
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 31  TVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNLVNQASRKNVV 80
           T AM+L+GCTRCLMYVM  ++D KCPKC  T LLD  N     S+K  +
Sbjct: 60  TKAMLLVGCTRCLMYVMLPEIDPKCPKCKSTVLLDFLNNEENTSKKTSI 108

[Close]

BLAST of Cla97C01G011280 vs. NCBI nr
Match: XP_017613487.1 (PREDICTED: uncharacterized protein LOC108458588 [Gossypium arboreum] >KHG14210.1 hypothetical protein F383_17358 [Gossypium arboreum])

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 28 DATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFN 69
          +ATT +MVL+GC RCLMYVM S+ D KCPKC  T LLD  N
Sbjct: 56 EATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLN 96

[Close]

BLAST of Cla97C01G011280 vs. NCBI nr
Match: XP_016737864.1 (PREDICTED: uncharacterized protein LOC107947867 [Gossypium hirsutum])

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 28 DATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFN 69
          +ATT +MVL+GC RCLMYVM S+ D KCPKC  T LLD  N
Sbjct: 56 EATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLN 96

[Close]

BLAST of Cla97C01G011280 vs. TrEMBL
Match: tr|A0A2P5QF74|A0A2P5QF74_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD29862 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 9   NSESISQDLSLAISNSTIEDATT----------VAMVLLGCTRCLMYVMSSKLDLKCPKC 68
           N+   S   S  +S+   +D+TT          ++MVL+GC RCLMYVM S++D KCPKC
Sbjct: 31  NTSVSSSPGSSCVSSEPTDDSTTMMPYPSSPEGMSMVLVGCPRCLMYVMLSEVDPKCPKC 90

Query: 69  NGTTLLDVFNLVNQASRKN 78
             T LLD+F+ +N     N
Sbjct: 91  KSTVLLDLFSQLNAKKASN 109

[Close]

BLAST of Cla97C01G011280 vs. TrEMBL
Match: tr|A0A1S2YKZ1|A0A1S2YKZ1_CICAR (uncharacterized protein LOC101502581 OS=Cicer arietinum OX=3827 GN=LOC101502581 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-06
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 31  TVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFNLVNQASRKNVV 80
           T AM+L+GCTRCLMYVM  ++D KCPKC  T LLD  N     S+K  +
Sbjct: 60  TKAMLLVGCTRCLMYVMLPEIDPKCPKCKSTVLLDFLNNEENTSKKTSI 108

[Close]

BLAST of Cla97C01G011280 vs. TrEMBL
Match: tr|A0A0B0NN04|A0A0B0NN04_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_17358 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.4e-06
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 28 DATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFN 69
          +ATT +MVL+GC RCLMYVM S+ D KCPKC  T LLD  N
Sbjct: 56 EATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLN 96

[Close]

BLAST of Cla97C01G011280 vs. TrEMBL
Match: tr|A0A1U8NJ13|A0A1U8NJ13_GOSHI (uncharacterized protein LOC107947867 OS=Gossypium hirsutum OX=3635 GN=LOC107947867 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.4e-06
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 28 DATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFN 69
          +ATT +MVL+GC RCLMYVM S+ D KCPKC  T LLD  N
Sbjct: 56 EATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLN 96

[Close]

BLAST of Cla97C01G011280 vs. TrEMBL
Match: tr|A0A2P5SBS4|A0A2P5SBS4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD06479 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.4e-06
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 28 DATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLDVFN 69
          +ATT +MVL+GC RCLMYVM S+ D KCPKC  T LLD  N
Sbjct: 56 EATTTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLN 96

[Close]

BLAST of Cla97C01G011280 vs. TAIR10
Match: AT5G06270.1 (unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.7e-07
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 31 TVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTTLLD 66
          T +MVL+GC RCLMYVM S+ D KCPKC  T LLD
Sbjct: 63 TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLD 97

[Close]

BLAST of Cla97C01G011280 vs. TAIR10
Match: AT3G11600.1 (unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 6.3e-07
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 3  QSFNNLNSESISQDLSLAISNSTIEDATTVAMVLLGCTRCLMYVMSSKLDLKCPKCNGTT 62
          +S N  N+ S S  +S   +    E+ T  +MVL+GC RCLMYVM S  D KCPKC  T 
Sbjct: 31 RSPNRSNTTSPSSCVSSETNQE--ENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTV 90

Query: 63 LLD 66
          LLD
Sbjct: 91 LLD 91

The following BLAST results are available for this feature:

BLAST of Cla97C01G011280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022888450.1	4.4e-06	52.24	uncharacterized protein LOC111403986 [Olea europaea var. sylvestris]	[more]
PPD73206.1	5.7e-06	41.77	hypothetical protein GOBAR_DD29862 [Gossypium barbadense]	[more]
XP_004506211.1	7.5e-06	55.10	PREDICTED: uncharacterized protein LOC101502581 [Cicer arietinum]	[more]
XP_017613487.1	1.3e-05	65.85	PREDICTED: uncharacterized protein LOC108458588 [Gossypium arboreum] >KHG14210.1...	[more]
XP_016737864.1	1.3e-05	65.85	PREDICTED: uncharacterized protein LOC107947867 [Gossypium hirsutum]	[more]

BLAST of Cla97C01G011280 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5QF74\|A0A2P5QF74_GOSBA	3.8e-06	41.77	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD29862 PE=4 SV...	[more]
tr\|A0A1S2YKZ1\|A0A1S2YKZ1_CICAR	4.9e-06	55.10	uncharacterized protein LOC101502581 OS=Cicer arietinum OX=3827 GN=LOC101502581 ...	[more]
tr\|A0A0B0NN04\|A0A0B0NN04_GOSAR	8.4e-06	65.85	Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_17358 PE=4 SV=1	[more]
tr\|A0A1U8NJ13\|A0A1U8NJ13_GOSHI	8.4e-06	65.85	uncharacterized protein LOC107947867 OS=Gossypium hirsutum OX=3635 GN=LOC1079478...	[more]
tr\|A0A2P5SBS4\|A0A2P5SBS4_GOSBA	8.4e-06	65.85	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD06479 PE=4 SV...	[more]

BLAST of Cla97C01G011280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G011280 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06270.1	1.7e-07	68.57	unknown protein	[more]
AT3G11600.1	6.3e-07	49.21	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080167	response to karrikin
biological_process	GO:0080147	root hair cell development
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G011280.1	Cla97C01G011280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33177:SF11	SUBFAMILY NOT NAMED	coord: 14..76
None	No IPR available	PANTHER	PTHR33177	FAMILY NOT NAMED	coord: 14..76

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G011280	Cla011048	Watermelon (97103) v1	wmwmbB246
Cla97C01G011280	ClCG01G011650	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G011280	Cucsa.319620	Cucumber (Gy14) v1	cgywmbB558
Cla97C01G011280	CmaCh13G003460	Cucurbita maxima (Rimu)	cmawmbB208
Cla97C01G011280	CmoCh13G003690	Cucurbita moschata (Rifu)	cmowmbB192
Cla97C01G011280	Lsi02G011950	Bottle gourd (USVL1VR-Ls)	lsiwmbB153
Cla97C01G011280	MELO3C035602.2	Melon (DHL92) v3.6.1	medwmbB132

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G011280	Watermelon (97103) v2	wmbwmbB012
Cla97C01G011280	Silver-seed gourd	carwmbB0000
Cla97C01G011280	Silver-seed gourd	carwmbB0964
Cla97C01G011280	Cucumber (Gy14) v2	cgybwmbB009
Cla97C01G011280	Cucumber (Gy14) v1	cgywmbB083
Cla97C01G011280	Cucumber (Gy14) v1	cgywmbB557
Cla97C01G011280	Cucurbita maxima (Rimu)	cmawmbB394
Cla97C01G011280	Cucurbita maxima (Rimu)	cmawmbB602
Cla97C01G011280	Cucurbita moschata (Rifu)	cmowmbB386
Cla97C01G011280	Cucurbita moschata (Rifu)	cmowmbB578
Cla97C01G011280	Cucurbita moschata (Rifu)	cmowmbB811
Cla97C01G011280	Wild cucumber (PI 183967)	cpiwmbB009
Cla97C01G011280	Wild cucumber (PI 183967)	cpiwmbB438
Cla97C01G011280	Cucumber (Chinese Long) v3	cucwmbB008
Cla97C01G011280	Cucumber (Chinese Long) v2	cuwmbB009
Cla97C01G011280	Bottle gourd (USVL1VR-Ls)	lsiwmbB033
Cla97C01G011280	Bottle gourd (USVL1VR-Ls)	lsiwmbB114
Cla97C01G011280	Melon (DHL92) v3.5.1	mewmbB136
Cla97C01G011280	Watermelon (Charleston Gray)	wcgwmbB131
Cla97C01G011280	Watermelon (97103) v1	wmwmbB309