Cucsa.319620 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.319620
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold03078 : 319649 .. 319912 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGAAGCTTCAGCCATTCAAAATCAGAATCGATATCACAAGATCTATCCTTATCAATATCTAGTTCAACAACAGAAGATTCCTCAAGAGTGGACATGGTGTTATTAGGGTGCACTCAATGCCTCATGTACATCATGTCATCTAAGTTTGATCTTAAATGTCCTAAATGTAACAACACCACGCTTCTTGATATATTTAATTTGACCAATCAAGTATCTCGACGAAATTTTGTCGATATGTCACCCGATGTTGCTAAATGA

mRNA sequence

ATGGGTCGAAGCTTCAGCCATTCAAAATCAGAATCGATATCACAAGATCTATCCTTATCAATATCTAGTTCAACAACAGAAGATTCCTCAAGAGTGGACATGGTGTTATTAGGGTGCACTCAATGCCTCATGTACATCATGTCATCTAAGTTTGATCTTAAATGTCCTAAATGTAACAACACCACGCTTCTTGATATATTTAATTTGACCAATCAAGTATCTCGACGAAATTTTGTCGATATGTCACCCGATGTTGCTAAATGA

Coding sequence (CDS)

ATGGGTCGAAGCTTCAGCCATTCAAAATCAGAATCGATATCACAAGATCTATCCTTATCAATATCTAGTTCAACAACAGAAGATTCCTCAAGAGTGGACATGGTGTTATTAGGGTGCACTCAATGCCTCATGTACATCATGTCATCTAAGTTTGATCTTAAATGTCCTAAATGTAACAACACCACGCTTCTTGATATATTTAATTTGACCAATCAAGTATCTCGACGAAATTTTGTCGATATGTCACCCGATGTTGCTAAATGA

Protein sequence

MGRSFSHSKSESISQDLSLSISSSTTEDSSRVDMVLLGCTQCLMYIMSSKFDLKCPKCNNTTLLDIFNLTNQVSRRNFVDMSPDVAK*

Homology

[Close]

BLAST of Cucsa.319620 vs. TrEMBL
Match: A0A0J8EU07_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g158450 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-07
Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 1


Query: 1  MGRSFSHSKSESISQDLSLSISSSTTEDSSRVDMVLLGCTQCLMYIMSSKFDLKCPKCNN 60
          M R+ S S+S S+S   S   S  +        MVL+GC +CLMY+M S+ D KCPKC +
Sbjct: 17 MRRAESPSRSASVSPPSSCVSSEISMNSPETTSMVLVGCPRCLMYVMLSEEDPKCPKCKS 76

Query: 61 TTLLDIFNLTNQVSRRN 78
          T LLD  +  N  +  N
Sbjct: 77 TVLLDFMHDNNDNNNNN 93

[Close]

BLAST of Cucsa.319620 vs. TrEMBL
Match: A0A072U397_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_7g105730 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-07
Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 6   SHSKSESISQDLSLSISSSTTEDSSRVDMVLLGCTQCLMYIMSSKFDLKCPKCNNTTLLD 65
           S ++S S+S   S   S + +       M+L+GC +CLMY+M S+ D KCPKC++T LLD
Sbjct: 42  SPTRSASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLD 101

Query: 66  IFNLTNQVSRRN 78
             N  N  ++++
Sbjct: 102 FLNAENNNNKKS 113

[Close]

BLAST of Cucsa.319620 vs. TrEMBL
Match: B7FH31_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-07
Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 6   SHSKSESISQDLSLSISSSTTEDSSRVDMVLLGCTQCLMYIMSSKFDLKCPKCNNTTLLD 65
           S ++S S+S   S   S + +       M+L+GC +CLMY+M S+ D KCPKC++T LLD
Sbjct: 29  SPTRSASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLD 88

Query: 66  IFNLTNQVSRRN 78
             N  N  ++++
Sbjct: 89  FLNAENNNNKKS 100

[Close]

BLAST of Cucsa.319620 vs. TrEMBL
Match: M4F180_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1


Query: 6  SHSKSESISQDLSLSISSSTTEDSSRVDMVLLGCTQCLMYIMSSKFDLKCPKCNNTTLLD 65
          S S+S + S +  +S   S  E  + + MVL+GC +CLMY+M S+ + KCPKC +T LLD
Sbjct: 32 SPSRSNTASPNSCVSSEPSQEEMETPISMVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLD 91

Query: 66 IFN 69
           F+
Sbjct: 92 FFH 94

[Close]

BLAST of Cucsa.319620 vs. TrEMBL
Match: A0A078F242_BRANA (BnaA05g27460D protein OS=Brassica napus GN=BnaA05g27460D PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1


Query: 6  SHSKSESISQDLSLSISSSTTEDSSRVDMVLLGCTQCLMYIMSSKFDLKCPKCNNTTLLD 65
          S S+S + S +  +S   S  E  + + MVL+GC +CLMY+M S+ + KCPKC +T LLD
Sbjct: 32 SPSRSNTASPNSCVSSEPSQEEMETPISMVLVGCPRCLMYVMLSQDEPKCPKCKSTVLLD 91

Query: 66 IFN 69
           F+
Sbjct: 92 FFH 94

[Close]

BLAST of Cucsa.319620 vs. TAIR10
Match: AT5G06270.1 (AT5G06270.1 unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 6.8e-09
Identity = 35/82 (42.68%), Postives = 44/82 (53.66%), Query Frame = 1


Query: 1   MGRSFSHSKSESISQDLSLSISSSTTEDSSRV---------DMVLLGCTQCLMYIMSSKF 60
           M RS S S + S +   S  +SS   +D   V          MVL+GC +CLMY+M S+ 
Sbjct: 24  MVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETTSMVLVGCPRCLMYVMLSED 83

Query: 61  DLKCPKCNNTTLLDIF--NLTN 72
           D KCPKC +T LLD    N TN
Sbjct: 84  DPKCPKCKSTVLLDFLHENATN 105

[Close]

BLAST of Cucsa.319620 vs. TAIR10
Match: AT3G11600.1 (AT3G11600.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1


Query: 6  SHSKSESISQDLSLSISSSTTEDSSRVDMVLLGCTQCLMYIMSSKFDLKCPKCNNTTLLD 65
          S ++S + S    +S  ++  E+ +   MVL+GC +CLMY+M S  D KCPKC +T LLD
Sbjct: 32 SPNRSNTTSPSSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLD 91

[Close]

BLAST of Cucsa.319620 vs. NCBI nr
Match: gi|870854933|gb|KMT06681.1| (hypothetical protein BVRB_7g158450 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-07
Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 1


Query: 1  MGRSFSHSKSESISQDLSLSISSSTTEDSSRVDMVLLGCTQCLMYIMSSKFDLKCPKCNN 60
          M R+ S S+S S+S   S   S  +        MVL+GC +CLMY+M S+ D KCPKC +
Sbjct: 17 MRRAESPSRSASVSPPSSCVSSEISMNSPETTSMVLVGCPRCLMYVMLSEEDPKCPKCKS 76

Query: 61 TTLLDIFNLTNQVSRRN 78
          T LLD  +  N  +  N
Sbjct: 77 TVLLDFMHDNNDNNNNN 93

[Close]

BLAST of Cucsa.319620 vs. NCBI nr
Match: gi|731344851|ref|XP_010683626.1| (PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-07
Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 1


Query: 1   MGRSFSHSKSESISQDLSLSISSSTTEDSSRVDMVLLGCTQCLMYIMSSKFDLKCPKCNN 60
           M R+ S S+S S+S   S   S  +        MVL+GC +CLMY+M S+ D KCPKC +
Sbjct: 111 MRRAESPSRSASVSPPSSCVSSEISMNSPETTSMVLVGCPRCLMYVMLSEEDPKCPKCKS 170

Query: 61  TTLLDIFNLTNQVSRRN 78
           T LLD  +  N  +  N
Sbjct: 171 TVLLDFMHDNNDNNNNN 187

[Close]

BLAST of Cucsa.319620 vs. NCBI nr
Match: gi|217071400|gb|ACJ84060.1| (unknown [Medicago truncatula])

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 6   SHSKSESISQDLSLSISSSTTEDSSRVDMVLLGCTQCLMYIMSSKFDLKCPKCNNTTLLD 65
           S ++S S+S   S   S + +       M+L+GC +CLMY+M S+ D KCPKC++T LLD
Sbjct: 29  SPTRSASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLD 88

Query: 66  IFNLTNQVSRRN 78
             N  N  ++++
Sbjct: 89  FLNAENNNNKKS 100

[Close]

BLAST of Cucsa.319620 vs. NCBI nr
Match: gi|922346510|ref|XP_013450169.1| (hypothetical protein MTR_7g105730 [Medicago truncatula])

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 6   SHSKSESISQDLSLSISSSTTEDSSRVDMVLLGCTQCLMYIMSSKFDLKCPKCNNTTLLD 65
           S ++S S+S   S   S + +       M+L+GC +CLMY+M S+ D KCPKC++T LLD
Sbjct: 42  SPTRSASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLD 101

Query: 66  IFNLTNQVSRRN 78
             N  N  ++++
Sbjct: 102 FLNAENNNNKKS 113

[Close]

BLAST of Cucsa.319620 vs. NCBI nr
Match: gi|1009113316|ref|XP_015872840.1| (PREDICTED: uncharacterized protein LOC107409931 [Ziziphus jujuba])

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1


Query: 7   HSKSESISQDLSLSISSST------TEDSSRVD--------MVLLGCTQCLMYIMSSKFD 66
           +S S  IS +LS+   SS+       E+SS VD        MVL+GC +CLMY+M S+ D
Sbjct: 40  NSPSSEISSELSVVEGSSSCVSWEAAEESSVVDGTFASSPAMVLVGCPRCLMYVMLSQVD 99

The following BLAST results are available for this feature:

BLAST of Cucsa.319620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0J8EU07_BETVU	3.2e-07	41.56	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g158450 PE=4 S...	[more]
A0A072U397_MEDTR	7.1e-07	38.89	Uncharacterized protein OS=Medicago truncatula GN=MTR_7g105730 PE=4 SV=1	[more]
B7FH31_MEDTR	7.1e-07	38.89	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]
M4F180_BRARP	1.6e-06	44.44	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A078F242_BRANA	1.6e-06	44.44	BnaA05g27460D protein OS=Brassica napus GN=BnaA05g27460D PE=4 SV=1	[more]

BLAST of Cucsa.319620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06270.1	6.8e-09	42.68	unknown protein	[more]
AT3G11600.1	1.2e-08	43.33	unknown protein	[more]

BLAST of Cucsa.319620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|870854933\|gb\|KMT06681.1\|	4.6e-07	41.56	hypothetical protein BVRB_7g158450 [Beta vulgaris subsp. vulgaris]	[more]
gi\|731344851\|ref\|XP_010683626.1\|	4.6e-07	41.56	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific-like [Beta ...	[more]
gi\|217071400\|gb\|ACJ84060.1\|	1.0e-06	38.89	unknown [Medicago truncatula]	[more]
gi\|922346510\|ref\|XP_013450169.1\|	1.0e-06	38.89	hypothetical protein MTR_7g105730 [Medicago truncatula]	[more]
gi\|1009113316\|ref\|XP_015872840.1\|	1.3e-06	47.95	PREDICTED: uncharacterized protein LOC107409931 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.319620.1	Cucsa.319620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33177	FAMILY NOT NAMED	coord: 10..84 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.319620	CmaCh13G003460	Cucurbita maxima (Rimu)	cgycmaB0883
Cucsa.319620	CmoCh13G003690	Cucurbita moschata (Rifu)	cgycmoB0880
Cucsa.319620	Lsi02G011950	Bottle gourd (USVL1VR-Ls)	cgylsiB521
Cucsa.319620	MELO3C035602.2	Melon (DHL92) v3.6.1	cgymedB528
Cucsa.319620	Cla97C01G011280	Watermelon (97103) v2	cgywmbB558
Cucsa.319620	BhiUN452G29	Wax gourd	cgywgoB641

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.319620	Cucurbita pepo (Zucchini)	cgycpeB0839
Cucsa.319620	Cucurbita pepo (Zucchini)	cgycpeB0841
Cucsa.319620	Bottle gourd (USVL1VR-Ls)	cgylsiB524
Cucsa.319620	Melon (DHL92) v3.6.1	cgymedB530
Cucsa.319620	Silver-seed gourd	carcgyB0000
Cucsa.319620	Cucumber (Chinese Long) v3	cgycucB498
Cucsa.319620	Cucumber (Chinese Long) v3	cgycucB496
Cucsa.319620	Watermelon (97103) v2	cgywmbB557
Cucsa.319620	Watermelon (97103) v2	cgywmbB559
Cucsa.319620	Cucumber (Gy14) v1	cgycgyB124
Cucsa.319620	Cucurbita maxima (Rimu)	cgycmaB0884
Cucsa.319620	Wild cucumber (PI 183967)	cgycpiB482
Cucsa.319620	Wild cucumber (PI 183967)	cgycpiB483
Cucsa.319620	Cucumber (Chinese Long) v2	cgycuB457
Cucsa.319620	Melon (DHL92) v3.5.1	cgymeB526
Cucsa.319620	Melon (DHL92) v3.5.1	cgymeB528
Cucsa.319620	Watermelon (Charleston Gray)	cgywcgB552
Cucsa.319620	Watermelon (97103) v1	cgywmB581