CmaCh13G003460 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G003460
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionGb:AAF02129.1, putative
LocationCma_Chr13 : 4000686 .. 4002666 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCAGCTGCTCGAAGTTGCAGCATCTTCGTCGAAAGCAAGTAAATCAAGTTATCATTTGTTAAGACGTATATATGCAGATTTCTTTTCCAATGGTTGTTTTCGTTTTTGAAAACTTCTGGATAGGTATTCCACGTCTGAACGGAATTCTTTTTGGTTAAAGAATCTCTTTCAAGTTGCTCTGGAACAATTAAGAGATCTTCTAGAAGGACGTTTAGGCCTTGAATCCTAGACTTTCCATAGGGGTCTGACCTTGCCGGAAGTAAGCCATAGGAGCAAATGAGTGACCTATTTTTGAGTCTCGAAGCAATATTTTCCTTAAATGCATATCCAGTTTATTCCAAATATCTCATTTTTTCTCCTTTACCAAATCTTCATTAACCTCGGTTTCTTATCTTTTCTATTCGGAACCTATTCGGTTGGTCATGCTGAATTTGACATCCCTTATCTCTTAAAACAACAAAAGAAGTAGGATGCATGAACCTCCCAACATGTTTTGTTTTATTGTTGCATATTGTTGCATTTTAATGTCATTTTGAAACATGTGATTTAGATGTCAAGACATTGGACATAAATTCTTGCCTAGCACGCCAAATGGCATAATAATTGGTGTAATAAAGTAGGGAGCAAATCATTTAAAGCAGACCTTTCGATCTTATCATCAGCCTATGGAATGTGGAATGGTTCTGTTCTTTGTTAGAACCCAAAAATTGAACGAAGCTCCTCAACGAACTCATACCACAAACACTCACTTAATTGCTTATTAACACACCTAACCAACTTTGCTTCGATGAGGAATGCTTGCACGCATCTTTGTGGCCAAAAGATGCTCTTCTCTTGTTCAATAATACCACGTCTCTTACCATGGTCCAAGCTAGAGGTTGATGTTCATATCTATACAAGTCTGGTACCAATCTGGTACCAAACAAGAAAAATTAAATGTATAAATTGATAAGACGAGTTTGTTGATGAAAGAAACCATTTTATGGTGTGGAGAGTGAGAAGAGTTGTACAACTTTTAAAAATTCAAACTCAATTAATTTAATGATATAATATTTTTCCAACAAATGAATTTGATACGTTTCTAGTCGTTTGTTTTTTCCTTTCCAAACATTTTGAATATGTTTTGTTGTTGTTTCTGTGTTTTATAGTCCTTGAACTTTCAATTATGTAATGGATTAGTCTTGCACTGGATTCATCCAACTTGGAATTCAATGAATCGATAGTTAACCATTTTTTTAACGATTGCCATCGCAAAGCTGGTCGATGCCCGCTGTTGAAAATATCCAAACCTGCTTACCCACCCCACCTCATACGACTAGTTTGGGGGAGGAGTTGGCTATTCGCCTTTTGGAGACACTTAAAAACCTCACATTTGAAGGAAGCATAGAGAGGCCTATCATAATTCATTATTATTGGTGTAGGTGACTGAACTTGATATTGTTGACAAGTCATATCATAAACTTGTGAATCAGAAGTCATATTGTATCCATATCAAAGGAGTTAATGAGTTGATTTTCAAAACCAAATTGGATATTCCTACCGGCAAAACTCAAAGGTCAATGTTCAAACTTTGTATTAAATGATAATTTAGACATTGTGAATTGTATACTCCATGTTTGGCCGTCTTTGATCTCTTATAAATCATATACAGCTTCCTATTGTAAGTACAAGATTTGATTGTTCATTTCTTCCTTCTTCTTCTTCTTCTCCGTTTTTCTATTGAAGAACTTTAAATTATGGGTCGAAACTTCAACAATCTGAAGTCAGAACCCATACTGCAAGATTTGTTGTTGGCAGGATCTAGCTCAAAAACCGAGGACGCTACGACATCAGTCATGGTGCTACTGGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTCGATCTCAAGTGTCCCAAATGTAATAACACTACGCTGCTTGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAAATCTTGTTGA

mRNA sequence

ATGACGCAGCTGCTCGAAGTTGCAGCATCTTCGTCGAAAGCAAGATCTAGCTCAAAAACCGAGGACGCTACGACATCAGTCATGGTGCTACTGGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTCGATCTCAAGTGTCCCAAATGTAATAACACTACGCTGCTTGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAAATCTTGTTGA

Coding sequence (CDS)

ATGACGCAGCTGCTCGAAGTTGCAGCATCTTCGTCGAAAGCAAGATCTAGCTCAAAAACCGAGGACGCTACGACATCAGTCATGGTGCTACTGGGATGTACTCAATGCCTCATGTACGTCATGTCGTCGAAGTTCGATCTCAAGTGTCCCAAATGTAATAACACTACGCTGCTTGATGTTCACAATTTGGCCAATCAAGCATCCAAGAAAAAATCTTGTTGA

Protein sequence

MTQLLEVAASSSKARSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLANQASKKKSC
Homology
[Close]
BLAST of CmaCh13G003460 vs. TAIR10
Match: AT3G11600.1 (AT3G11600.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.4e-07
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1 

Query: 10 SSSKARSSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD 60
          SS  +  +++ E+ T + MVL+GC +CLMYVM S  D KCPKC +T LLD
Sbjct: 42 SSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLD 91

[Close]
BLAST of CmaCh13G003460 vs. TAIR10
Match: AT5G06270.1 (AT5G06270.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.4e-07
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1 

Query: 20  TEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLD-VHNLANQAS 69
           T   TTS MVL+GC +CLMYVM S+ D KCPKC +T LLD +H  A  A+
Sbjct: 59  TSPETTS-MVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNAN 107

The following BLAST results are available for this feature:
BLAST of CmaCh13G003460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh13G003460 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh13G003460 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G11600.11.4e-0752.00 unknown protein[more]
AT5G06270.11.4e-0758.00 unknown protein[more]
BLAST of CmaCh13G003460 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G003460.1CmaCh13G003460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33177FAMILY NOT NAMEDcoord: 28..66
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh13G003460Cucsa.319620Cucumber (Gy14) v1cgycmaB0883
CmaCh13G003460Cla011048Watermelon (97103) v1cmawmB202
CmaCh13G003460ClCG01G011650Watermelon (Charleston Gray)cmawcgB180
CmaCh13G003460CmoCh13G003690Cucurbita moschata (Rifu)cmacmoB218
CmaCh13G003460Lsi02G011950Bottle gourd (USVL1VR-Ls)cmalsiB204
CmaCh13G003460MELO3C035602.2Melon (DHL92) v3.6.1cmamedB216
CmaCh13G003460Cla97C01G011280Watermelon (97103) v2cmawmbB208
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh13G003460Wax gourdcmawgoB0260
CmaCh13G003460Cucurbita maxima (Rimu)cmacmaB211
CmaCh13G003460Wild cucumber (PI 183967)cmacpiB212
CmaCh13G003460Wild cucumber (PI 183967)cmacpiB222
CmaCh13G003460Cucumber (Chinese Long) v2cmacuB210
CmaCh13G003460Cucumber (Chinese Long) v2cmacuB222
CmaCh13G003460Melon (DHL92) v3.5.1cmameB195
CmaCh13G003460Cucurbita pepo (Zucchini)cmacpeB209
CmaCh13G003460Cucumber (Gy14) v2cgybcmaB068
CmaCh13G003460Cucumber (Gy14) v2cgybcmaB078
CmaCh13G003460Melon (DHL92) v3.6.1cmamedB221
CmaCh13G003460Cucumber (Chinese Long) v3cmacucB0253