MELO3C029641.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029641.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr02 : 16241778 .. 16242107 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACCGCAAAGTCTACGAGTGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTCTGCATAGTCATTTTAGCACCACCAGTGACGGCCCACACGATGGCAGAAGCACCAAGTCCATTATTAGTACTACTTGATCAGGATTCATCTTTCTCAAACTGCGCTCCTTTTATTTTAGAAGCGACAATGTGTATGGTGGATGTAATCAAGCTTCCTGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTCTGACCTTAACGATTGTGCTCCCGAAATTTATCAACATATTCCTGGCATGGATGTGATTAAGAAAATCTGTGGCCTATGA

mRNA sequence

ATGGAGACCGCAAAGTCTACGAGTGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTCTGCATAGTCATTTTAGCACCACCAGTGACGGCCCACACGATGGCAGAAGCACCAAGTCCATTATTAGTACTACTTGATCAGGATTCATCTTTCTCAAACTGCGCTCCTTTTATTTTAGAAGCGACAATGTGTATGGTGGATGTAATCAAGCTTCCTGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTCTGACCTTAACGATTGTGCTCCCGAAATTTATCAACATATTCCTGGCATGGATGTGATTAAGAAAATCTGTGGCCTATGA

Coding sequence (CDS)

ATGGAGACCGCAAAGTCTACGAGTGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTCTGCATAGTCATTTTAGCACCACCAGTGACGGCCCACACGATGGCAGAAGCACCAAGTCCATTATTAGTACTACTTGATCAGGATTCATCTTTCTCAAACTGCGCTCCTTTTATTTTAGAAGCGACAATGTGTATGGTGGATGTAATCAAGCTTCCTGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTCTGACCTTAACGATTGTGCTCCCGAAATTTATCAACATATTCCTGGCATGGATGTGATTAAGAAAATCTGTGGCCTATGA

Protein sequence

METAKSTSASTIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL

Homology

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BLAST of MELO3C029641.2 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 2.1e-45
Identity = 97/110 (88.18%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   METAKSTSASTIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQ-DSSFSNCAPFIL 60
           ME  KSTSASTIRLA+VFLVCIVILAP VTA TMAEAPSP+LVL D+ DSSFSNCAPFIL
Sbjct: 1   MEATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFIL 60

Query: 61  EATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 110
           EATMC+VDVIKLPVA HPSCCKAISDLNDCAP+IYQHIP MDVIKKICGL
Sbjct: 61  EATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICGL 110

[Close]

BLAST of MELO3C029641.2 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 4.5e-16
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 4   AKSTSASTIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATM 63
           AKS    T++L LVF+ C  I APP  A  +A AP+       +D SF  C  F+ EAT 
Sbjct: 3   AKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATK 62

Query: 64  CMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMD--VIKKIC 108
           CM+DV K P+A HP+CCKAIS L  C+   +  IP  D  VIK +C
Sbjct: 63  CMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]

BLAST of MELO3C029641.2 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 2.9e-15
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 10  STIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMCMVDVI 69
           ++++L ++FLVCI ILA PV    M    + L     +D +  NC  F  EAT CM+DV+
Sbjct: 3   ASLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVM 62

Query: 70  KLPVAPHPSCCKAISDLNDCAPEIYQHIPGMD--VIKKICGL 110
           K  + PHPSCC+AI  LNDC PE+Y+ +P  D  +IKKIC L
Sbjct: 63  KNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

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BLAST of MELO3C029641.2 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.4e-45
Identity = 97/110 (88.18%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   METAKSTSASTIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQ-DSSFSNCAPFIL 60
           ME  KSTSASTIRLA+VFLVCIVILAP VTA TMAEAPSP+LVL D+ DSSFSNCAPFIL
Sbjct: 1   MEATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFIL 60

Query: 61  EATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 110
           EATMC+VDVIKLPVA HPSCCKAISDLNDCAP+IYQHIP MDVIKKICGL
Sbjct: 61  EATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICGL 110

[Close]

BLAST of MELO3C029641.2 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-16
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 4   AKSTSASTIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATM 63
           AKS    T++L LVF+ C  I APP  A  +A AP+       +D SF  C  F+ EAT 
Sbjct: 3   AKSLKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATK 62

Query: 64  CMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMD--VIKKIC 108
           CM+DV K P+A HP+CCKAIS L  C+   +  IP  D  VIK +C
Sbjct: 63  CMIDVFKHPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVC 108

[Close]

BLAST of MELO3C029641.2 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-15
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 10  STIRLALVFLVCIVILAPPVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMCMVDVI 69
           ++++L ++FLVCI ILA PV    M    + L     +D +  NC  F  EAT CM+DV+
Sbjct: 3   ASLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVM 62

Query: 70  KLPVAPHPSCCKAISDLNDCAPEIYQHIPGMD--VIKKICGL 110
           K  + PHPSCC+AI  LNDC PE+Y+ +P  D  +IKKIC L
Sbjct: 63  KNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 100

The following BLAST results are available for this feature:

BLAST of MELO3C029641.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65190.1	2.1e-45	88.18	hypothetical protein Csa_1G263450 [Cucumis sativus]	[more]
KGN65096.1	4.5e-16	46.23	hypothetical protein Csa_1G212820 [Cucumis sativus]	[more]
KGN65195.1	2.9e-15	47.06	hypothetical protein Csa_1G263980 [Cucumis sativus]	[more]

BLAST of MELO3C029641.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029641.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029641.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTD6\|A0A0A0LTD6_CUCSA	1.4e-45	88.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]
tr\|A0A0A0LYQ3\|A0A0A0LYQ3_CUCSA	3.0e-16	46.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1	[more]
tr\|A0A0A0LTE1\|A0A0A0LTE1_CUCSA	1.9e-15	47.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029641.2.1	MELO3C029641.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C029641.2	Csa1G212820	Cucumber (Chinese Long) v2	cumedB038
MELO3C029641.2	Csa1G263450	Cucumber (Chinese Long) v2	cumedB049
MELO3C029641.2	CSPI01G16440	Wild cucumber (PI 183967)	cpimedB042
MELO3C029641.2	CSPI01G17020	Wild cucumber (PI 183967)	cpimedB051
MELO3C029641.2	CmoCh10G005450	Cucurbita moschata (Rifu)	cmomedB052
MELO3C029641.2	Lsi06G010720	Bottle gourd (USVL1VR-Ls)	lsimedB421
MELO3C029641.2	Lsi06G010250	Bottle gourd (USVL1VR-Ls)	lsimedB425
MELO3C029641.2	Cp4.1LG18g05380	Cucurbita pepo (Zucchini)	cpemedB392
MELO3C029641.2	Cp4.1LG04g09130	Cucurbita pepo (Zucchini)	cpemedB734
MELO3C029641.2	Cla012181	Watermelon (97103) v1	medwmB288
MELO3C029641.2	ClCG06G011830	Watermelon (Charleston Gray)	medwcgB249
MELO3C029641.2	Cla97C06G120970	Watermelon (97103) v2	medwmbB251
MELO3C029641.2	Bhi02G000735	Wax gourd	medwgoB290
MELO3C029641.2	CsaV3_1G028130	Cucumber (Chinese Long) v3	cucmedB052

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029641.2	Watermelon (97103) v2	medwmbB242
MELO3C029641.2	Cucumber (Gy14) v2	cgybmedB045
MELO3C029641.2	Cucurbita maxima (Rimu)	cmamedB023
MELO3C029641.2	Cucurbita maxima (Rimu)	cmamedB060
MELO3C029641.2	Cucurbita maxima (Rimu)	cmamedB112
MELO3C029641.2	Cucurbita maxima (Rimu)	cmamedB469
MELO3C029641.2	Cucurbita moschata (Rifu)	cmomedB011
MELO3C029641.2	Cucurbita moschata (Rifu)	cmomedB105
MELO3C029641.2	Cucurbita pepo (Zucchini)	cpemedB604
MELO3C029641.2	Cucurbita pepo (Zucchini)	cpemedB851
MELO3C029641.2	Bottle gourd (USVL1VR-Ls)	lsimedB309
MELO3C029641.2	Watermelon (Charleston Gray)	medwcgB242
MELO3C029641.2	Watermelon (97103) v1	medwmB268
MELO3C029641.2	Silver-seed gourd	carmedB0135
MELO3C029641.2	Silver-seed gourd	carmedB0585
MELO3C029641.2	Silver-seed gourd	carmedB0636
MELO3C029641.2	Silver-seed gourd	carmedB0675